The family Dermabacteraceae

The Prokaryotes: Actinobacteria

Volumn , Issue , 2014, Pages 289-299

  Stackebrandt, Erko ^a  

^a LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84929865383     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-30138-4_170     Document Type: Chapter

References (61)

1. Babay HA, Kambal AM (2004) Isolation of coryneform bacteria from blood cultures of patients at a university hospital in Saudi Arabia. Saudi Med J 25:1073-1079
2. Bae JW, Rhee SK, Park JR, Chung WH, Nam YD, Lee I, Kim H, Park YH (2005) Development and evaluation of genome probing microarrays for monitoring lactic acid bacteria. Appl Environ Microbiol 71:8825-8835
3. Baldani VLD, Döbereiner J (1980) Host-plant specificity in the infection of cereals with Azospirillum spp. Soil Biol Biochem 12:433-439
4. Bavbek M, Caner H, Arsian H, Demirhan B, Tunlibek S, Altinörs N (1998) Cerebral Dermabacter hominis abscess. Infect 26:181-183
5. Brenner DJ, McWhorter AC, Leete Knutson JK, Steigerwalt AG (1982) Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds. J Clin Microbiol 15:1133-1140
6. Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL (2007) Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci USA 104:299-304
7. Buczolits S, Schumann P, Weidler G, Radax C, Busse H-J (2003) Brachybacterium muris sp nov, isolated from the liver of a laboratory mouse strain. Int J Syst Evol Microbiol 53:1955-1960
8. Busse H-J, Schumann P (1999) Polyamine profiles within genera of the class Actinobacteria with LL-diaminopimelic acid in the peptidoglycan. Int J Syst Bacteriol 49:179-184
9. Cadenas MB, Maggi RG, Diniz PP, Breitschwerdt KT, Sontakke S, Breitschwerdt EB (2007) Identification of bacteria from clinical samples using Bartonella alpha-Proteobacteria growth medium. J Microbiol Meth 71:147-155
10. Cai J, Collins MD (1994) Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter. Int J Syst Bacteriol 44:583-585
11. Chou JH, Lin KY, Lin MC, Sheu SY, Wei YH, Arun AB, Young CC, Chen WM (2007) Brachybacterium phenoliresistens sp nov, isolated from oil-contaminated coastal sand. Int J Syst Evol Microbiol 57:2674-2679
12. Collins MD, Brown J, Jones D (1988) Brachybacterium faecium gen nov, sp nov, a coryneform bacterium from poultry deep litter. Int J Syst Bacteriol 38:45-48
13. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133-142D
14. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
15. Funke G, Stubbs S, Pfyffer GE, Marchiani M, Collins M (1994) Characteristics of CDC group 3 and group 5 coryneform bacteria isolated from clinical specimens and assignment to the genus Dermabacter. J Clin Microbiol 32:1223-1228
16. Funke G, Pünter V, von Graevenitz A (1996) Antimicrobial susceptibility patterns of some recently established coryneform bacteria. Ant Agents Chemother 40:2874-2878
17. Gontia I, Kavita K, Schmid M, Hartmann A, Jha B (2011) Brachybacterium saurashtrense, sp nov, a halotolerant root-associated bacterium with plant-growing potential. Int J Syst Evol Microbiol 61:2799-2804
18. Goméz-Garcés JL, Oteo J, Garcia G, Aracil B, Alós JI, Funke G (2001) Bacteremia by Dermabacter hominis, a rare pathogen. J Clin Microbiol 39:2356-2357
19. Gruner E, Steigerwalt AG, Hollis DG, Weyant RS, Weaver RE, Moss CW, Daneshvar M, Brenner DJ (1994) Recognition of Dermabacter hominis, formerly CDC fermentative coryneform groups 3 and group 5, as a potential human pathogen. J Clin Microbiol 32:1918-1922
20. Gvozdyak OR, Nogina TM, Schumann P (1992) Taxonomic study of the genus Brachybacterium: Brachybacterium nesterenkovii sp nov. Int J Syst Bacteriol 42:74-78
21. Hellebuyck T, Pasmans F, Haesebrouck F, Martel A (2009) Designing a successful antimicrobial treatment against Devriesea agamarum infection in lizards. Vet Microbiol 139:189-192
22. Hellebuyck T, Pasmans F, Blooi M, Haesebrouck F, Martel A (2011) Prolonged environmental persistence requires efficient disinfection procedures to control Devriesea agamarum-associated disease in lizards. Lett Appl Microbiol 52:28-32
23. Hendrick CW, Dolye J D, Hugley B. (1995). A new solid medium for enumerating cellulose utilizing bacteria in soil. Appl Environ Microbiol 61:2016-2019.
24. Heyrman J, Balcaen A, De Vos P, Schumann P, Swings J (2002) Brachybacterium fresconis sp nov and Brachybacterium sacelli sp nov, isolated from deteriorated parts of a medieval wall painting of the chapel of Castle Herberstein (Austria). Int J Syst Evol Microbiol 52:1641-1646
25. Huang K, Zhang I, Liu Z, Chen Q, Peng Q, Li W, Cui X, Chen Y (2009) Diversity of culturable bacteria associated with sea urchin Hemicentrotus pulcherrrimus from Naozhou Island. Acta Microbiol Sin 49:1424-1429, Article in Chinese
26. Jones D, Collins MD (1988) Taxonomic studies on some human cutaneous coryneform bacteria: description of Dermabacter hominis gen nov, sp nov. FEMS Microbiol Lett 51:51-56
27. Jones D (1975) A numerical study of coryneform and related bacteria. J Gen Microbiol 87:52-96
28. Kelly RB, Cozzarelli NR, Deutscher MP, Lehman IR, Kornberg A (1970) Enzymatic synthesis of deoxyribonucleic acid XXXII Replication of duplex deoxyribonucleic acid by polymerase at a single strand break. J Biol Chem 245:39-45
29. Krett G, Palatinszky M (2009) A polyphasic study on the species diversity of the sediment microbiota of Lake Heviz. Acta Microbiol Immunol Hung 56:330-355
30. Lapidus A, Pukall R, LaButti K, Copeland A, Glavina del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng J-F, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, D'haeseleer P, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk H-P (2009) Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T). Stand Genom Sci 1:3-11
31. Lee H-J, Cho C-H, Kwon M-J, Nam N-H, Lee K-N, Lee C-K (2011) Apatient with fatal septicemia caused by a rare pathogen Dermabacter hominis. Infect Chemother 43:86-88
32. Ludwig W, Euzéby J, Schumann P, Busse H-J, Trujillo ME, Kämpfer P, Whitman WB (2012) Road map of the phylum Actinobacteria. In: Whitman WB, Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Garrity G, Ludwig W, Suzuki K-I (eds) Bergey's manual of systematic bacteriology, vol 5, 2nd edn. Springer, New York, pp 1-28
33. Martel A, Pasmans F, Hellebuyck T, Haesebrouck F, Vandamme P (2008) Devriesea agamarum gen nov, sp nov, a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards. Int J Syst Evol Microbiol 58:2206-2209
34. Martin J, Bemer P, Touchais S, Asseraz N, Corvec S (2009) Recurrent abscesses due to Finegoldia magma, Dermabacter hominis and Staphylococcus aureus in an immunocompetent patient. Anaerobe 15:201-203
35. Meyer SA, Schleifer K-H (1978) Deoxyribonucleic acid reassociation in the classification of coagulase-positive staphylococci. Arch Microbiol 117:183-188
36. Murayama M, Kakinuma Y, Maeda Y, Rao JR, Matsuda M, Xu J, Moore PJ, Millar BC, Rooney PJ, Goldsmith CE, Loughrey A, McMahon MA, McDowell DA, Moore JE (2010) Molecular identification of airborne bacteria associated with aerial spraying of bovine slurry waste employing 16S rRNA gene PCR and gene sequencing techniques. Ecotoxicol Environ Saf 73:443-447
37. Park S-K, Kim M-S, Jung M-J, Nam Y-D, Park E-J, Roh SW, Bae J-W (2011a) Brachybacterium squillarum sp nov, isolated from salt-fermented seafood. Int J Syst Evol Microbiol 61:1118-1122
38. Park S-K, Roh SW, Whon TW, Bae J-W (2011b) Genome sequence of Brachybacterium squillarum 6-3T, isolated from salt-fermented seafood. J Bacteriol 193:6416-6417
39. Probst A, Vaishampayan P, Osman S, Moissl-Eichinger C, Andersen GL, Venkateswaran K (2010) Diversity of anaerobic microbes in spacecraft assembly clean rooms. Appl Environ Microbiol 76:2837-2845
40. Radtke A, Bergh K, Oien CM, Bevanger LS (2001) Peritoneal dialysis-associated peritonitis caused by Dermabacter hominis. J Clin Microbiol 39:3420-3421
41. Renvoise A, Aldrovandi N, Raoult D, Roux V (2009) Helcobacillus massiliensis gen nov, spec nov, a novel representative of the family Dermabacteraceae isolated from a patient with a cutaneous discharge. Int J Syst Evol Microbiol 59:2346-2351
42. Rintala H, Pitkäranta M, Toivola M, Paulin L, Nevalainen A (2008) Diversity and seasonal dynamics of bacterial community in indoor environment. BMC Microbiol 8:56
43. Santo CE, Morais PV, Grass G (2010) Isolation and characterization of bacteria resistant to metallic copper surfaces. Appl Environ Microbiol 76:1341-1348
44. Schefferle HE (1966) Coryneform bacteria in poultry deep litter. J Appl Bacteriol 29:147-160
45. Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407-477
46. Schubert K, Ludwig W, Springer N, Kroppenstedt RM, Accolas JP, Fiedler F (1996) Two coryneform bacteria isolated from the surface of French Gruye're and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp nov and Brachybacterium tyrofermentans. sp nov. Int J Syst Bacteriol 46:81-87
47. Schumann P (2011) Peptidoglycan structure. In: Rainey F, Oren A (eds) Taxonomy of prokaryotes, methods in microbiology, vol 38. Academic, London, pp 101-129
48. Silv CF, Schwan RF, Sousa Dias ES, Wheals AE (2000) Microbial diversity during maturation and natural processing of coffee cherries of Coffee Arabica in Brazil. Int J Food Microbiol 60:251-260
49. Stackebrandt E, Goebel BM (1994) A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
50. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:471-491
51. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690
52. Takeuchi M, Fang C-X, Yokota A (1995) Taxonomic study of the genus Brachybacterium: proposal of Brachybacterium conglomeratum sp nov, nom rev, Brachybacterium paraconglomeratum sp nov, and Brachybacterium rhamnosum sp. nov. Int J Syst Bacteriol 45:160-168
53. Taubel M, Rintala H, Pitkaranta M, Paulin L, Laitinen S, Pekkanen J, Hyvarinen A, Nevalainen A (2009) The occupant as a source of house dust bacteria. J Allergy Clin Immunol 124:834-840
54. Troxler R, Funke G, von Graevenitz A, Stock I (2001) Natural antibiotic susceptibility of recently established coryneform bacteria. Eur J Clin Microbiol 20:315-323
55. Wang L, Wang W, Lai Q, Shao Z (2010) Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean. Environ Microbiol 12:1230-1242
56. Wang W, Shao Z, Liu Y, Wang G (2009) Removal of multi-heavy metals using biogenic manganese oxides generated by a deep-sea sedimentary bacterium-Brachybacterium sp strain MN32. Microbiology 155:1989-1996
57. Wayne L, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) International Committee on Systematic Bacteriology:report ofthe ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
58. Xiao H, Chen Y, Liu Z, Huang K, Li W, Cui X, Zhang L, Li L (2009) Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhhou Island in Zhanjiang, China. Acta Microbiol Sin 49:246-250, Article in Chinese
59. Yarza P, Ludwig W, Hermann JR, Schleifer KH, Glöckner FO, Rosselló-Móra R (2010) Update of the All-Species Living-Tree Project based on 16S and 23S rRNA sequence analyses system. Appl Microbiol 33:291-299
60. Zhang G, Zeng G, Cai X, Deng S, Luo H, Sun G (2007) Brachybacterium zhongshanense sp nov, a cellulose-decomposing bacterium from sediment along the Qijiang River, Zhongshan City, China. Int J Syst Evol Microbiol 57:2519-2524
61. Zhi X-Y, Li W-J, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposalof two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589-608