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Volumn 14, Issue 3, 2015, Pages 435-444

Impact of a short-term exposure to spaceflight on the phenotype, genome, transcriptome and proteome of Escherichia coli

Author keywords

Escherichia coli; genome; iTRAQ; next generation sequencing; phenotype; RNA seq; spaceflight

Indexed keywords

COLIFORM BACTERIUM; GENOME; GENOTYPE; METABOLISM; PATHOGEN; PHENOTYPE; POLYMORPHISM; PROTEIN; RNA;

EID: 84929835698     PISSN: 14735504     EISSN: 14753006     Source Type: Journal    
DOI: 10.1017/S1473550415000038     Document Type: Article
Times cited : (13)

References (53)
  • 1
    • 84874593121 scopus 로고    scopus 로고
    • Effect of simulated microgravity on E. coli K12 MG1655 growth and gene expression
    • Arunasri, K., Adil, M., Charan, K.V., Suvro, C., Reddy, S.H. & Shivaji, S. (2013). Effect of simulated microgravity on E. coli K12 MG1655 growth and gene expression. PLoS ONE 8.
    • (2013) PLoS ONE , pp. 8
    • Arunasri, K.1    Adil, M.2    Charan, K.V.3    Suvro, C.4    Reddy, S.H.5    Shivaji, S.6
  • 2
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. & Claverie, J.M. (1997). The significance of digital gene expression profiles. Genome Res. 7, 986-995.
    • (1997) Genome Res. , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 3
    • 0013902668 scopus 로고
    • Antibiotic susceptibility testing by a standardized single disk method
    • Bauer, A.W., Kirby, W.M., Sherris, J.C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am. J. Clin. Pathol. 45, 493-496.
    • (1966) Am. J. Clin. Pathol. , vol.45 , pp. 493-496
    • Bauer, A.W.1    Kirby, W.M.2    Sherris, J.C.3    Turck, M.4
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. & Yekutieli, D. (2001). The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188.
    • (2001) Ann. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 5
    • 0020413535 scopus 로고
    • Biosynthesis of vitamin K (menaquinone) in bacteria
    • Bentley, R. & Meganathan, R. (1982). Biosynthesis of vitamin K (menaquinone) in bacteria. Microbiol. Rev. 46, 241-280.
    • (1982) Microbiol. Rev. , vol.46 , pp. 241-280
    • Bentley, R.1    Meganathan, R.2
  • 6
    • 0026320087 scopus 로고
    • Escherichia-coli metabolism in space
    • Bouloc, P. & Dari, R. (1991). Escherichia-coli metabolism in space. J. Gen. Microbiol. 137, 2839-2843.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 2839-2843
    • Bouloc, P.1    Dari, R.2
  • 7
    • 0036883052 scopus 로고    scopus 로고
    • Effects of space flight, clinorotation, and centrifugation on the substrate utilization efficiency of E-coli
    • Brown, R.B., Klaus, D. & Todd, P. (2002). Effects of space flight, clinorotation, and centrifugation on the substrate utilization efficiency of E-coli. Microgravit. Sci. Technol. 13, 24-29.
    • (2002) Microgravit. Sci. Technol. , vol.13 , pp. 24-29
    • Brown, R.B.1    Klaus, D.2    Todd, P.3
  • 9
    • 33746748794 scopus 로고    scopus 로고
    • Alterations in the virulence potential of enteric pathogens and bacterial-host cell interactions under simulated microgravity conditions
    • Chopra, V., Fadl, A.A., Sha, J., Chopra, S., Galindo, C.L. & Chopra, A.K. (2006). Alterations in the virulence potential of enteric pathogens and bacterial-host cell interactions under simulated microgravity conditions. J. Toxicol. Environ. Health A 69, 1345-1370.
    • (2006) J. Toxicol. Environ. Health a , vol.69 , pp. 1345-1370
    • Chopra, V.1    Fadl, A.A.2    Sha, J.3    Chopra, S.4    Galindo, C.L.5    Chopra, A.K.6
  • 11
  • 14
    • 84874603211 scopus 로고    scopus 로고
    • Impact of simulated microgravity on the normal developmental time line of an animal-bacteria symbiosis
    • Foster, J.S., Khodadad, C.L., Ahrendt, S.R. & Parrish, M.L. (2013). Impact of simulated microgravity on the normal developmental time line of an animal-bacteria symbiosis. Sci. Rep. 3, 1340.
    • (2013) Sci. Rep. , vol.3 , pp. 1340
    • Foster, J.S.1    Khodadad, C.L.2    Ahrendt, S.R.3    Parrish, M.L.4
  • 15
    • 84862950660 scopus 로고    scopus 로고
    • Secondary metabolism in simulated microgravity and space flight
    • Gao, H., Liu, Z. & Zhang, L. (2011). Secondary metabolism in simulated microgravity and space flight. Protein Cell 2, 858-861.
    • (2011) Protein Cell , vol.2 , pp. 858-861
    • Gao, H.1    Liu, Z.2    Zhang, L.3
  • 18
    • 84862021684 scopus 로고    scopus 로고
    • Resistance of bacterial endospores to outer space for planetary protection purposes-experiment PROTECT of the EXPOSE-E mission
    • Horneck, G. et al. (2012). Resistance of bacterial endospores to outer space for planetary protection purposes-experiment PROTECT of the EXPOSE-E mission. Astrobiology 12, 445-456.
    • (2012) Astrobiology , vol.12 , pp. 445-456
    • Horneck, G.1
  • 19
    • 0034952363 scopus 로고    scopus 로고
    • Escherichia coli strains colonising the gastrointestinal tract protect germfree mice against Salmonella typhimurium infection
    • Hudault, S., Guignot, J. & Servin, A.L. (2001). Escherichia coli strains colonising the gastrointestinal tract protect germfree mice against Salmonella typhimurium infection. Gut 49, 47-55.
    • (2001) Gut , vol.49 , pp. 47-55
    • Hudault, S.1    Guignot, J.2    Servin, A.L.3
  • 20
    • 0033237305 scopus 로고    scopus 로고
    • Long-term exposure to spaceflight conditions affects bacterial response to antibiotics
    • Juergensmeyer, M.A., Juergensmeyer, E.A. & Guikema, J.A. (1999). Long-term exposure to spaceflight conditions affects bacterial response to antibiotics. Microgravit. Sci. Technol. 12, 41-47.
    • (1999) Microgravit. Sci. Technol. , vol.12 , pp. 41-47
    • Juergensmeyer, M.A.1    Juergensmeyer, E.A.2    Guikema, J.A.3
  • 21
    • 0032586336 scopus 로고    scopus 로고
    • Effects of space flight and mixing on bacterial growth in low volume cultures
    • Kacena, M.A., Manfredi, B. & Todd, P. (1999a). Effects of space flight and mixing on bacterial growth in low volume cultures. Microgravit. Sci. Technol. 12, 74-77.
    • (1999) Microgravit. Sci. Technol. , vol.12 , pp. 74-77
    • Kacena, M.A.1    Manfredi, B.2    Todd, P.3
  • 22
    • 0032988972 scopus 로고    scopus 로고
    • Bacterial growth in space flight: Logistic growth curve parameters for Escherichia coli and Bacillus subtilis
    • Kacena, M.A., Merrell, G.A., Manfredi, B., Smith, E.E., Klaus, D.M. &Todd, P. (1999b). Bacterial growth in space flight: logistic growth curve parameters for Escherichia coli and Bacillus subtilis. Appl. Microbiol. Biotechnol. 51, 229-234.
    • (1999) Appl. Microbiol. Biotechnol. , vol.51 , pp. 229-234
    • Kacena, M.A.1    Merrell, G.A.2    Manfredi, B.3    Smith, E.E.4    Klaus, D.M.5    Todd, P.6
  • 23
    • 0031043072 scopus 로고    scopus 로고
    • Investigation of space flight effects on Escherichia coli and a proposed model of underlying physical mechanisms
    • Klaus, D., Simske, S., Todd, P. & Stodieck, L. (1997). Investigation of space flight effects on Escherichia coli and a proposed model of underlying physical mechanisms. Microbiology, UK 143, 449-455.
    • (1997) Microbiology, UK , vol.143 , pp. 449-455
    • Klaus, D.1    Simske, S.2    Todd, P.3    Stodieck, L.4
  • 24
    • 0014955205 scopus 로고
    • Effect of lack of gravity on airborne infection during space flight
    • Knight, V., Couch, R.B. & Landahl, H.D. (1970). Effect of lack of gravity on airborne infection during space flight. JAMA 214, 513-518.
    • (1970) JAMA , vol.214 , pp. 513-518
    • Knight, V.1    Couch, R.B.2    Landahl, H.D.3
  • 25
    • 84885425834 scopus 로고    scopus 로고
    • Intimate host attachment: Enteropathogenic and enterohaemorrhagic Escherichia coli
    • Lai, Y., Rosenshine, I., Leong, J.M. & Frankel, G. (2013). Intimate host attachment: enteropathogenic and enterohaemorrhagic Escherichia coli. Cell. Microbiol. 15, 1796-1808.
    • (2013) Cell. Microbiol. , vol.15 , pp. 1796-1808
    • Lai, Y.1    Rosenshine, I.2    Leong, J.M.3    Frankel, G.4
  • 26
    • 18844384468 scopus 로고    scopus 로고
    • Travails of microgravity: Man and microbes in space
    • Lynch, S.V. & Matin, A. (2005). Travails of microgravity: man and microbes in space. Biologist 52.
    • (2005) Biologist , pp. 52
    • Lynch, S.V.1    Matin, A.2
  • 27
    • 33845533004 scopus 로고    scopus 로고
    • Escherichia coli biofilms formed under low-shear modeled microgravity in a ground-based system
    • Lynch, S.V., Mukundakrishnan, K., Benoit, M.R., Ayyaswamy, P.S. &Matin, A. (2006). Escherichia coli biofilms formed under low-shear modeled microgravity in a ground-based system. Appl. Environ. Microbiol. 72(12), 7701-7710.
    • (2006) Appl. Environ. Microbiol. , vol.72 , Issue.12 , pp. 7701-7710
    • Lynch, S.V.1    Mukundakrishnan, K.2    Benoit, M.R.3    Ayyaswamy, P.S.4    Matin, A.5
  • 28
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • Mellmann, A. et al. (2011). Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS ONE 6, e22751.
    • (2011) PLoS ONE , vol.6 , pp. e22751
    • Mellmann, A.1
  • 30
    • 75949115042 scopus 로고    scopus 로고
    • RNA-Seq: A method for comprehensive transcriptome analysis
    • ed. Frederick, M. Ausubel et al. Chapter 4: Unit 4 11 11-13. Pubilished by John Wiley & Sons, Inc. SN - 0471142720
    • Nagalakshmi, U., Waern, K. & Snyder, M. (2010). RNA-Seq: a method for comprehensive transcriptome analysis. Current Protocols in Molecular Biology, ed. Frederick, M. Ausubel et al. Chapter 4: Unit 4 11 11-13. Pubilished by John Wiley & Sons, Inc. SN - 0471142720.
    • (2010) Current Protocols in Molecular Biology
    • Nagalakshmi, U.1    Waern, K.2    Snyder, M.3
  • 31
    • 84862015988 scopus 로고    scopus 로고
    • Transcriptomic responses of germinating Bacillus subtilis spores exposed to 1.5 years of space and simulated Martian conditions on the EXPOSE-E experiment PROTECT
    • Nicholson, W.L., Moeller, R., Team, P. & Horneck, G. (2012). Transcriptomic responses of germinating Bacillus subtilis spores exposed to 1.5 years of space and simulated Martian conditions on the EXPOSE-E experiment PROTECT. Astrobiology 12, 469-486.
    • (2012) Astrobiology , vol.12 , pp. 469-486
    • Nicholson, W.L.1    Moeller, R.2    Team, P.3    Horneck, G.4
  • 32
    • 0343618709 scopus 로고    scopus 로고
    • Microgravity as a novel environmental signal affecting Salmonella enterica serovar Typhimurium virulence
    • Nickerson, C.A., Ott, C.M., Mister, S.J., Morrow, B.J., Burns-Keliher, L. &Pierson, D.L. (2000). Microgravity as a novel environmental signal affecting Salmonella enterica serovar Typhimurium virulence. Infect. Immun. 68, 3147-3152.
    • (2000) Infect. Immun. , vol.68 , pp. 3147-3152
    • Nickerson, C.A.1    Ott, C.M.2    Mister, S.J.3    Morrow, B.J.4    Burns-Keliher, L.5    Pierson, D.L.6
  • 34
    • 0035449070 scopus 로고    scopus 로고
    • Can bacterial interference prevent infection?
    • Reid, G., Howard, J. & Gan, B.S. (2001). Can bacterial interference prevent infection? Trends Microbiol. 9, 424-428.
    • (2001) Trends Microbiol. , vol.9 , pp. 424-428
    • Reid, G.1    Howard, J.2    Gan, B.S.3
  • 36
    • 1942507953 scopus 로고    scopus 로고
    • Microbial ecology of the surface exploration of Mars with human-operated vehicles
    • Schuerger, A.C. (2004). Microbial ecology of the surface exploration of Mars with human-operated vehicles. Sci. Technol. 107, 363-386.
    • (2004) Sci. Technol. , vol.107 , pp. 363-386
    • Schuerger, A.C.1
  • 37
    • 0141873034 scopus 로고    scopus 로고
    • Survival of endospores of Bacillus subtilis on spacecraft surfaces under simulated Martian environments: Implications for the forward contamination of Mars
    • Schuerger, A.C., Mancinelli, R.L., Kern, R.G., Rothschild, L.J. & McKay, C.P. (2003). Survival of endospores of Bacillus subtilis on spacecraft surfaces under simulated Martian environments: implications for the forward contamination of Mars. Icarus 165, 253-276.
    • (2003) Icarus , vol.165 , pp. 253-276
    • Schuerger, A.C.1    Mancinelli, R.L.2    Kern, R.G.3    Rothschild, L.J.4    McKay, C.P.5
  • 39
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • ed. PGRGEMWAWNR KRIEG. American Society for Microbiology, Washington, DC.
    • Smibert, R.M. & Krieg, N.R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology (ed. PGRGEMWAWNR KRIEG.), pp. 607-654. American Society for Microbiology, Washington, DC.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 40
    • 84870400370 scopus 로고    scopus 로고
    • Space flight modifies T cellactivation - Role of microgravity
    • Sonnenfeld, G. (2012). Space flight modifies T cellactivation - role of microgravity. J. Leukoc. Biol. 92, 1125-1126.
    • (2012) J. Leukoc. Biol. , vol.92 , pp. 1125-1126
    • Sonnenfeld, G.1
  • 41
    • 84890555990 scopus 로고    scopus 로고
    • Phenotypic, genomic, transcriptomic and proteomic changes in Bacillus cereus after a short-term space flight
    • Su, L. et al. (2014). Phenotypic, genomic, transcriptomic and proteomic changes in Bacillus cereus after a short-term space flight. Adv. Space Res. 53, 18-29.
    • (2014) Adv. Space Res. , vol.53 , pp. 18-29
    • Su, L.1
  • 42
  • 43
    • 24044552278 scopus 로고    scopus 로고
    • Towards rational treatment of bacterial infections during extended space travel
    • Taylor, P.W. & Sommer, A.P. (2005). Towards rational treatment of bacterial infections during extended space travel. Int. J. Antimicrob. Agents 26, 183-187.
    • (2005) Int. J. Antimicrob. Agents , vol.26 , pp. 183-187
    • Taylor, P.W.1    Sommer, A.P.2
  • 44
    • 67649194650 scopus 로고    scopus 로고
    • The space-flight environment: The International Space Station and beyond
    • Thirsk, R., Kuipers, A., Mukai, C. & Williams, D. (2009). The space-flight environment: the International Space Station and beyond. Can. Med. Assoc. J. 180, 1216-1220.
    • (2009) Can. Med. Assoc. J. , vol.180 , pp. 1216-1220
    • Thirsk, R.1    Kuipers, A.2    Mukai, C.3    Williams, D.4
  • 45
    • 34247568591 scopus 로고    scopus 로고
    • Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
    • Tucker, D.L., Ott, C.M., Huff, S., Fofanov, Y., Pierson, D.L., Willson, R.C. & Fox, G.E. (2007). Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment. BMC Microbiol. 7, 15.
    • (2007) BMC Microbiol. , vol.7 , pp. 15
    • Tucker, D.L.1    Ott, C.M.2    Huff, S.3    Fofanov, Y.4    Pierson, D.L.5    Willson, R.C.6    Fox, G.E.7
  • 47
    • 84870243240 scopus 로고    scopus 로고
    • Expression of multiple stress response genes by Escherichia coli under modeled reduced gravity
    • Vukanti, R. & Leff, L.G. (2012). Expression of multiple stress response genes by Escherichia coli under modeled reduced gravity. Microgravit. Sci. Tecnol. 24, 267-279.
    • (2012) Microgravit. Sci. Tecnol. , vol.24 , pp. 267-279
    • Vukanti, R.1    Leff, L.G.2
  • 48
    • 44449129109 scopus 로고    scopus 로고
    • Changes in gene expression of E-coli under conditions of modeled reduced gravity
    • Vukanti, R., Mintz, E. & Leff, L. (2008). Changes in gene expression of E-coli under conditions of modeled reduced gravity. Microgravit. Sci. Tecnol. 20, 41-57.
    • (2008) Microgravit. Sci. Tecnol. , vol.20 , pp. 41-57
    • Vukanti, R.1    Mintz, E.2    Leff, L.3
  • 49
    • 84855607737 scopus 로고    scopus 로고
    • Effect of modeled reduced gravity conditions on bacterial morphology and physiology
    • Vukanti, R., Model, M.A. & Leff, L.G. (2012). Effect of modeled reduced gravity conditions on bacterial morphology and physiology. BMC Microbiol. 12.
    • (2012) BMC Microbiol. , pp. 12
    • Vukanti, R.1    Model, M.A.2    Leff, L.G.3
  • 50
    • 84896696717 scopus 로고    scopus 로고
    • Transcriptomic and proteomic responses of Serratia marcescens to spaceflight conditions involve large-scale changes in metabolic pathways
    • Wang, Y. et al. 2014. Transcriptomic and proteomic responses of Serratia marcescens to spaceflight conditions involve large-scale changes in metabolic pathways. Adv. Space Res. 53, 1108-1117.
    • (2014) Adv. Space Res. , vol.53 , pp. 1108-1117
    • Wang, Y.1
  • 51
    • 36049010104 scopus 로고    scopus 로고
    • Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq
    • Wilson, J.W. et al. (2007). Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq. Proc. Natl. Acad. Sci. USA 104, 16299-16304.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 16299-16304
    • Wilson, J.W.1
  • 52
    • 0036840426 scopus 로고    scopus 로고
    • Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an R poS-independent manner
    • Wilson, J.W., Ott, C.M., Ramamurthy, R., Porwollik, S., McClelland, M., Pierson, D.L. & Nickerson, C.A. (2002a). Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an R poS-independent manner. Appl. Environ. Microbiol. 68, 5408-5416.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5408-5416
    • Wilson, J.W.1    Ott, C.M.2    Ramamurthy, R.3    Porwollik, S.4    McClelland, M.5    Pierson, D.L.6    Nickerson, C.A.7


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