Proteomic perspectives on understanding and improving Jatropha curcas L.

Jatropha, Challenges for a New Energy Crop

Volumn 2, Issue , 2013, Pages 375-391

  Raorane, Manish ^a   Popluechai, Siam ^b   Gatehouse, Angharad M R ^c   Kohli, Ajay ^a,c  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b MAE FAH LUANG UNIVERSITY   (Thailand)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84929554990     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4614-4915-7_19     Document Type: Chapter

References (80)

1. Abigor RD, Uadia PO, Foglia TA, Haas MJ, Scott K, Savary BJ (2002) Partial puri fication and properties of lipase from germinating seeds of Jatropha curcas L. J Am Oil Chem Assoc 79(11):1123-1126
2. Achten WMJ, Aerts R, Mathijs E, Verchot L, Singh VP, Muys B (2007) Jatropha biodiesel fueling sustainability? Biofuels Bioprod Biore fin 1:283-291
3. Allison SP, Go VLW (2004) Nutrition and genomics in metabolic issues of clinical importance. Nestle nutrition workshop series-clinical nd performance program 9: 243-271. Karger Publishers
4. Asif MH, Mantri SS, Sharma A, Srivastava A, Trivedi I, Gupta P et al (2010) Complete sequence and organisation of the Jatropha curcas (Euphorbiaceae) chloroplast genome. Tree Genet Genom 6:941-952
5. Azam MM, Waris A, Nahar NM (2005) Prospects and potential of fatty acid methyl esters of some non-traditional seed oils for use as biodiesel in India. Biomass Bioenergy 29:293-302
6. Basha SD, Sujatha M (2007) Inter and intra-population variability of Jatropha curcas (L.) characterized by RAPD and ISSR markers and development of population-specific SCAR markers. Euphytica 156:375-386
7. Berkowitz O, Jost R, Pollmann S, Masle J (2008) Characterization of TCTP, the translationally controlled tumor protein, from Arabidopsis thaliana. Plant Cell 12:3430-3447
8. BIODIESEL 2020: 2008 Global market survey, feedstock trends and forecasts. Multi-client Study, 2 685 pages Published by Emerging Markets Online Brittaine RA, Lutaladio N (2010) Jatropha: A smallholder bioenergy crop. The potential for propoor development. Food and Agriculture Organisation, Rome
9. Cans C, Passer BJ, Shalak V, Nancy-Portebois V, Crible V, Amzallag N et al (2003) Translationally controlled tumor protein acts as a guanine nucleotide dissociation inhibitor on the translation elongation factor eEF1A. Proc Natl Acad Sci (USA) 100:13892-13897
10. Chhetri AB, Tango MS, Budge SM, Watts KC, Islam MR (2008) Non-edible plant oils as new sources for biodiesel production. Int J Mol Sci 9:169-180
11. Coemans B, Takahashi Y, Berberich T, Ito A, Kanzaki H, Matsumura H et al (2008) Highthroughput in planta expression screening identi fies an ADP-ribosylation factor (ARF1) involved in non-host resistance and R gene-mediated resistance. Mol Plant Pathol 9(1):25-36
12. Costa GGL, Cardoso KC, Del Bem LEV, Lima AC, Cunha MAS, de Campos-Leite L et al (2010) Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L. BMC Genom 11:462
13. Dani KGS, Hatti KS, Ravikumar P, Kush A (2011) Structural and functional analyses of a saturated acyl ACP thioesterase, type B from immature seed tissue of Jatropha curcas. Plant Biol 13(3):453-461
14. Demirbas A (2007) Progress and recent trends in biofuels. Prog Energ Combust Sci 33:1-18
15. Demirbas A (2008a) Biomethanol production from organic waste materials. Energ Sources Part A Recov Util Environ Effects 30:565-572
16. Demirbas A (2008b) The importance of bioethanol and biodiesel from biomass. Energy Sources Part B Econ Plann Policy 3:177-185
17. Deore AC, Johnson TS (2008) High-frequency plant regeneration from leaf-disc cultures of Jatropha urcas L: An important biodiesel plant. Plant Biotechnol Rep 2:7-11
18. Devappa RK, Swamylingappa B (2008) Biochemical and nutritional evaluation of Jatropha protein isolate prepared by steam injection heating for reduction of toxic and antinutritional factors. J Sci Food Agric 88:911-919
19. Eastmond PJ (2006) Sugar-dependent 1 encodes a patatin domain triacylglycerol lipase that initiates storage oil breakdown in germinating Arabidopsis seeds. Plant Cell 18:665-675
20. Gatehouse JA (2002) Plant resistance towards insect herbivores: A dynamic interaction. Tansley review number 140. New Phytol 156:145-169
21. Genomeweb (2010) http://www.genomeweb.com/sequencing/life-technologies-and-sg-biofuelssequence-Jatropha-genome-solid-4. Accessed 29 May 2011
22. Gohil RH, Pandya JB (2008) Genetic diversity assessment in physic nut (Jatropha curcas L.). Intl J Plant Prod 2:321-326
23. Gu KY, Chiam H, Tian DS, Yin ZC (2011) Molecular cloning and expression of heteromeric ACCase subunit genes from Jatropha curcas. Plant Sci 180(4):642-649
24. Gupta S, Srivastava M, Mishra GP, Naik PK, Chauhan RS, Tiwari SK et al (2008) Analogy of ISSR and RAPD markers for comparative analysis of genetic diversity among different Jatropha curcas genotypes. Afr J Biotechnol 7:4230-4243
25. eller J (1996) Physic nut (Jatropha curcas L.) promoting the conservation and use of underutilized and neglected crops. leben/International Plant Genetic Resources Institute, Rome, pp 1-66
26. Jongschaap REE, Corre WJ, Bindraban PS, Brandenburg WA (2007) Claims and facts on Jatropha curcas L: global Jatropha curcas evaluation breeding and propagation programme. Plant Research International, Wageningen report 158
27. Joshi M, Mishra A, Jha B (2011) Efficient genetic transformation of Jatropha curcas L. by microprojectile bombardment using embryo axes. Ind Crops Prod 33:67-77
28. Kohli A, Raorane M, Popluechai S, Kannan U, Syers JK, O'Donnell AG (2009) Biofuels: Jatropha curcas as a novel, non-edible oilseed plant for biodiesel. In: Ferry N, Gatehouse AMR (eds) Environmental impact of genetically modi fied novel crops. CABI, Wallingford, pp 294-322
29. Komatsu S, Yamada E, Furukawa K (2009) Cold stress changes the concanavalin A-positive glycosylation pattern of proteins expressed in the basal parts of rice leaf sheaths. Amino Acids 36(1):115-123
30. Kumar N, Anand KGV, Pamidimarri DVNS, Sarkar T, Reddy MP, Radhakrishnan T et al (2010) Stable genetic transformation of Jatropha curcas via Agrobacterium tumefaciens-mediated gene transfer using leaf explants. Ind Crops Prod 32:41-47
31. Kumar N, Anand KGV, Reddy MP (2011) In vitro regeneration from petiole explants of non-toxic Jatropha curcas. Ind Crops Prod 33:146-151
32. Lee JR, Lee SS, Jang HH, Lee YM, Park JH, Park SC et al (2009) Heat-shock dependent oligomeric status alters the function of a plant-specific thioredoxin-like protein, AtTDX. Proc Natl Acad Sci USA 106:5978-5983
33. Li J, Li MR, Wu PZ, Tian CE, Jiang HW, Wu GJ (2008) Molecular cloning and expression analysis of a gene encoding a putative beta-ketoacyl-acyl carrier protein (ACP) synthase III (KAS III) from Jatropha curcas. Tree Physiol 28(6):921-927
34. Liang Y, Chen H, Tang MJ, Yang PF, Shen SH (2007) Responses of Jatropha curcas seedlings to cold stress: photosynthesis-related proteins and chlorophyll fl uorescence characteristics. Physiol Planta 131(3):508-517
35. Lin J, Li YX, Zhou XW, Tang KX, Chen F (2003) Cloning and characterization of a curcin gene encoding a ribosome inactivating protein from Jatropha curcas. DNA Seq 14(4):311-317
36. Lin J, Jin YJ, Zhou MQ, Zhou X, Wang JY (2009) Molecular cloning, characterization and functional analysis of a 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from Jatropha curcas. Afr J Biotechnol 8(15):3455-3462
37. Lin J, Jin Y, Zhou X, Wang JY (2010a) Molecular cloning and functional analysis of the gene encoding geranylgeranyl diphosphate synthase from Jatropha curcas. Afr J Biotechnol 9:3342-3351
38. Lin J, Zhou X, Wang JY, Jiang PH, Tang KX (2010b) Puri fication and characterization of curcin, a toxic lectin from the seed of Jatropha curcas. Prep Biochem Biotechnol 40(2):107-118
39. Liu H, Liu YJ, Yang MF, Shen SH (2009) A comparative analysis of embryo and endosperm proteome from seeds of Jatropha curcas. J Integr Plant Biol 51(9):850-857
40. Liu B, Wang WG, Gao JH, Chen F, Wang SH, Xu Y et al (2010a) Molecular cloning and characterization of a jasmonate biosynthetic pathway gene for allene oxide cyclase from Jatropha curcas. Acta Physiol Plant 32(3):531-539
41. Liu B, Yao L, Wang WG, Gao JH, Chen F, Wang SH et al (2010b) Molecular cloning and characterization of phospholipase D from Jatropha curcas. Mol Biol Rep 37(2):939-946
42. Maciel FM, Laberty MA, Oliveira ND, Felix SP, Soares AMD, Vericimo MA et al (2009) A new 2 S albumin from Jatropha curcas L. seeds and assessment of its allergenic properties. Peptides 30(12):2103-2107
43. Makkar H, Maes J, De Greyt W, Becker K (2009a) Removal and degradation of phorbol pretreatment and transesteri fication of Jatropha. J Am Oil Chem Soc 86:173-181
44. Makkar H et al (2009b) Removal and degradation of phorbol esters during pre-treatment and transesteri fication of Jatropha curcas oil. J Am Oil Chem Soc 86:173-181
45. Makkar H, Kumar V, Oyeleye O, Akinleye AO, Angulo-Escalante M, Becker K (2010) Traditional wisdom con firmed by scienti fic research: Jatropha species from Mexico is non-toxic in nature. Nat Preced. http://hdl.handle.net/10101/npre.2010.4155.1
46. Makkar HPS, Kumar V, Oyeleye OO, Akinleye AO, Angulo-Escalante MA, Becker K (2011) Jatropha platyphylla, a new non-toxic Jatropha species: physical properties and chemical constituents including toxic and antinutritional factors of seeds. Food Chem 125:63-71
47. Mandal R (2005) The Indian biofuels programme-national mission on bio-diesel. Presentation at the international conference and expo, Biofuels 2012: vision to reality, New Delhi, 17-18,48. Oct 2005
48. Martin G, Mayeux A (1985) Curcas oil (Jatropha curcas L.) a possible fuel. Agric Trop 9:73-75
49. Natarajan P, Kanagasabapathy D, Gunadayalan G, Panchalingam J, Shree N, Sugantham PA et al (2010) Gene discovery from Jatropha curcas by sequencing of ESTs from normalized and fulllength enriched cDNA library from developing seeds. BMC Genomics 11:606
50. Nunez-Colin C, Goytia-Jimenez MA (2009) Distribution and agronomic characterization of potential cultivations regions of physic nut in Mexico. Pesqui Agropecu Bras 44:1078-1085
51. O'Leary B, Park J, William C, Plaxton WC (2011) The remarkable diversity of plant PEPC (phosphoenolpyruvate carboxylase): recent insights into the physiological functions and post-translational controls of non-photosynthetic PEPCs. Biochem J 436:15-34
52. Pecina-Quintero V, Anaya-Lopez JL, Colmenero AZ, Garcia NM, Colin CAN, Bonilla JLS et al (2011) Molecular characterization of Jatropha curcas L. genetic resources from Chiapas, Mexico through AFLP markers. Biomass Bioenergy 35:1897-1905
53. Popluechai S (2010) Molecular characterisation of Jatropha curcas , towards an understanding of its potential as a non-edible oilseed-based source of biodiesel. Ph.D. Thesis, University of Newcastle, NewcastleuponTyne. https://theses.ncl.ac.uk/dspace/bitstream/10443/992/1/ Popluechai%2010.pdf
54. Popluechai S, Breviario D, Mulpuri S, Makkar H, Raorane M, Reddy A et al (2009) Narrow genetic and apparent phenetic diversity in Jatropha curcas : initial success with generating low phorbol ester interspecific hybrids. Nat Preced. http://hdl.handle.net/10101/npre.2009.2782.1
55. Popluechai S, Froissard M, Jolivet P, Breviario D, Gatehouse AMR, O'Donnell AG et al (2011) Jatropha curcas oil body proteome and oleosins: L-form JcOle3 as a potential phylogenetic marker. Plant Physiol Biochem 49(3):352-356
56. Purkayastha J, Sugla T, Paul A, Solleti SK, Mazumdar P, Basu A et al (2010) Efficient in vitro plant regeneration from shoot apices and gene transfer by particle bombardment in Jatropha curcas. Biol Plant 54:13-20
57. Qin XB, Gao F, Zhang JP, Gao JH, Lin S, Wang Y et al (2011a) Molecular cloning, characterization and expression of cDNA encoding translationally controlled tumor protein (TCTP) from Jatropha curcas L. Mol Biol Rep 38(5):3107-3112
58. Qin XB, Lin FR, Li Y, Gou CB, Chen F (2011b) Molecular analysis of ARF1 expression profiles during development of physic nut (Jatropha curcas L.). Mol Biol Rep 38(3):1681-1686
59. Raorane ML (2010) Genotypic and phenotypic relationships in Jatropha : genome and gene analysis. Ph.D. Thesis, University of Newcastle, Newcastle upon Tyne
60. Sahia C, Singha A, Blumwaldb E, Grover A (2006) Beyond osmolytes and transporters: novel plant salt-stress tolerance-related genes from transcriptional profiling data. Physiol Plant 127:1-9
61. Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M et al (2011) Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res 18:65-76
62. Shen JL, Jia XN, Ni HG, Sun PG, Niu SH, Chen XY (2010) AFLP analysis of genetic diversity of Jatropha curcas grown in Hainan, China. Trees Struc Func 24:455-462
63. Shuit SH, Lee KT, Kamaruddin AH, Yusup S (2010) Reactive extraction and in situ esteri fication of Jatropha curcas L. seeds for the production of biodiesel. Fuel 89:527-530
64. Sirisomboon P, Kitchaiya P, Pholpho T, Mahuttanyavanitch W (2007) Physical and mechanical properties of Jatropha curcas L. fruits, nuts and kernels. Biosyst Eng 97:201-207
65. Sudha G, Ravishankar GA (2002) Involvement and interaction of various signaling compounds on the plant metabolic events during defense response, resistance to stress factors, formation of econdary metabolites and their molecular aspects. Plant Cell Tissue Org Cult 71:181-212
66. Sudheer-Pamidimarri DV, Mastan SG, Rahman H, Reddy MP (2009) Molecular characterization and genetic diversity analysis of Jatropha curcas L. in India using RAPD and AFLP analysis. Mol Biol Rep 37:2249-2257
67. Sun QB, Li LF, Li Y, Wu GJ, Ge XJ (2008) SSR and AFLP markers reveal low genetic diversity in the biofuel plant Jatropha curcas in China. Crop Sci 48:1865-1871
68. Tang MJ, Sun JW, Liu Y, Chen F, Shen SH (2007) Isolation and functional characterization of the JcERF gene, a putative AP2/EREBP domain-containing transcription factor, in the woody oil plant Jatropha curcas. Plant Mol Biol 63(3):419-428
69. Tatikonda L, Wani SP, Kannan S, Beerelli N, Sreedevi TK, Hoisington DA et al (2009) AFLPbased molecular characterization of an elite germplasm collection of Jatropha curcas L, a biofuel plant. Plant Sci 176:505-513
70. Tong L, Shu-Ming P, Wu-Yuan D, Dan-Wei M, Ying X, Meng X et al (2006) Characterization of a new stearoyl-acyl carrier protein desaturase gene from Jatropha curcas. Biotechnol Lett 28(9):657-662
71. Wang ZY, Lin JM, Xu ZF (2008) Oil contents and fatty acid composition in Jatropha curcas seeds collected from different regions. Nan Fang Yi Ke Da Xue Xue Bao 28:1045-1046
72. Wei Q, Liao Y, Chen Y, Wang SH, Xu Y, Tang L et al (2005) Isolation, characterisation and antifungal activity of beta-1,3-glucanase from seeds of Jatropha curcas. South Afr J Bot 71(1):95-99
73. Wu PZ, Li J, Wei Q, Zeng L, Chen YP, Li MR (2009) Cloning and functional characterization of an acyl-acyl carrier protein thioesterase (JcFATB1) from Jatropha curcas. Tree Physiol 29(10):1299-1305
74. Xiao JH, Zhang H, Niu LY, Wang XG (2011) Efficient screening of a novel antimicrobial peptide from Jatropha curcas by cell membrane affinity chromatography. J Agric Food Chem 59(4):1145-1151
75. Yang MF, Liu YJ, Liu Y, Chen H, Chen F, Shen SH (2009) Proteomic analysis of oil mobilization in seed germination and post germination development of Jatropha curcas. J Proteome Res 8(3):1441-1451
76. Yang J, Yang MF, Wang D, Chen F, Shen SH (2010) JcDof1, a Dof transcription factor gene, is associated with the light-mediated circadian clock in Jatropha curcas. Physiol Plant 139(3): 324-334
77. Yang J, Yang MF, Zhang WO, Chen F, Shen SH (2011) A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas. Plant Sci 6:667-674
78. Ye J, Qu J, Bui HTN, Chua NH (2009) Rapid analysis of Jatropha curcas gene functions by virusinduced gene silencing. Plant Biotechnol J 7(9):964-976
79. Zhang Y, Wang YX, Jiang LD, Xu Y, Wang YC, Lu DH et al (2007) Aquaporin JcPIP2 is involved in drought responses in Jatropha curcas. Acta Biochim Biophys Sin 39(10):787-794
80. Zhang FL, Niu B, Wang YC, Chen F, Wang SH, Xu Y et al (2008) A novel betaine aldehyde dehydrogenase gene from Jatropha curcas , encoding an enzyme implicated in adaptation to environmental stress. Plant Sci 174(5):510-518