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Volumn , Issue , 2014, Pages 5232-5235

Investigation of factors affecting RNA-seq gene expression calls

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; CONFORMAL MAPPING; RNA;

EID: 84929501249     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/EMBC.2014.6944805     Document Type: Conference Paper
Times cited : (7)

References (13)
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    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 3
    • 84878203143 scopus 로고    scopus 로고
    • Are gene loops the cause of transcriptional noise?
    • D. Hebenstreit, "Are gene loops the cause of transcriptional noise?," Trends in Genetics, Vol. 29, pp. 333-338, 2013.
    • (2013) Trends in Genetics , vol.29 , pp. 333-338
    • Hebenstreit, D.1
  • 4
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    • A model based criterion for gene expression calls using RNA-seq data
    • G. P. Wagner, K. Kin, and V. J. Lynch, "A model based criterion for gene expression calls using RNA-seq data," Theory in Biosciences, Vol. 132, pp. 159-164, 2013.
    • (2013) Theory in Biosciences , vol.132 , pp. 159-164
    • Wagner, G.P.1    Kin, K.2    Lynch, V.J.3
  • 6
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • H. Li and R. Durbin, "Fast and accurate short read alignment with Burrows-Wheeler transform," Bioinformatics, Vol. 25, pp. 1754-1760, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 7
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • D. Kim, G. Pertea, C. Trapnell, H. Pimentel, R. Kelley, and S. L. Salzberg, "TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions," Genome Biol, Vol. 14, p. R36, 2013.
    • (2013) Genome Biol , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 8
    • 33748486517 scopus 로고    scopus 로고
    • AceView: A comprehensive cDNA-supported gene and transcripts
    • D. Thierry-Mieg and J. Thierry-Mieg, "AceView: a comprehensive cDNA-supported gene and transcripts," Genome biology, Vol. 7, p. S12, 2006.
    • (2006) Genome Biology , vol.7 , pp. S12
    • Thierry-Mieg, D.1    Thierry-Mieg, J.2
  • 9
    • 84877813442 scopus 로고    scopus 로고
    • Improving the flexibility of RNA-seq data analysis pipelines
    • 2012 IEEE International Workshop on
    • J. H. Phan, P.-Y. Wu, and M. D. Wang, "Improving the flexibility of RNA-Seq data analysis pipelines," in Genomic Signal Processing and Statistics, (GENSIPS), 2012 IEEE International Workshop on, 2012, pp. 70-73.
    • (2012) Genomic Signal Processing and Statistics, (GENSIPS) , pp. 70-73
    • Phan, J.H.1    Wu, P.-Y.2    Wang, M.D.3
  • 12
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    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • K. D. Pruitt, T. Tatusova, and D. R. Maglott, "NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins," Nucleic acids research, Vol. 35, pp. D61-D65, 2007.
    • (2007) Nucleic Acids Research , vol.35 , pp. D61-D65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 13
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    • Assessing the impact of human genome annotation choice on RNA-seq expression estimates
    • P.-Y. Wu, J. H. Phan, and M. D. Wang, "Assessing the impact of human genome annotation choice on RNA-seq expression estimates," BMC Bioinformatics, Vol. 14, p. S8, 2013.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.