Methanesulfonate (MSA) catabolic genes from marine and estuarine bacteria

PLoS ONE

Volumn 10, Issue 5, 2015, Pages

  Henriques, Ana C ^a   De Marco, Paolo ^a  

^a INSTITUTO DE INVESTIGAÇÃO E FORMAÇÃO AVANÇADA EM CIÊNCIAS E TECNOLOGIAS DA SAÚDE   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

SEA WATER; BACTERIAL DNA; MESYLIC ACID; MESYLIC ACID DERIVATIVE; MIXED FUNCTION OXIDASE;

ALPHA CHAIN; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIUM CULTURE; BACTERIUM ISOLATE; BINDING AFFINITY; CONTROLLED STUDY; ESTUARINE SPECIES; FILOMICROBIUM; GENE FUNCTION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC MARKER; MARINE BACTERIUM; MARINOSULFONOMONAS METHYLOTROPHA; METAGENOMICS; METHYLOBACTERIUM; MSMA GENE; MSME GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; POPULATION ABUNDANCE; PROTEIN MOTIF; AQUATIC SPECIES; BACTERIAL GENOME; BACTERIUM; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; HYPHOMICROBIACEAE; ISOLATION AND PURIFICATION; METABOLISM; METAGENOME; MICROBIOLOGY; PHYLOGENY;

BACTERIA (MICROORGANISMS); FILOMICROBIUM;

AQUATIC ORGANISMS; BACTERIA; BASE COMPOSITION; DNA, BACTERIAL; GENOME, BACTERIAL; HYPHOMICROBIACEAE; MESYLATES; METAGENOME; MIXED FUNCTION OXYGENASES; PHYLOGENY; SEAWATER; SEQUENCE ANALYSIS, DNA;

EID: 84929378506     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0125735     Document Type: Article

References (48)

1. Vogt M, Liss PS. Dimethylsulfide and climate. In: Quéré C. L., Saltzman ES, editors. Surface Ocean- Lower Atmosphere Processes. 2009. p. 197-232.
2. Gondwe M, Krol M, Gieskes W, Klaassen W, de Baar H. The contribution of ocean-leaving DMS to the global atmospheric burdens of DMS, MSA, SO2, and NSS SO4. Global Biogeochem Cycles. 2003 Jun 30; 17(2).
3. Curson ARJ, Todd JD, Sullivan MJ, Johnston AWB. Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes. Nat Rev Microbiol. 2011; 9(October):849-59.
4. Glasow R von, Crutzen PJ. Model study of multiphase DMS oxidation with a focus on halogens. Atmos Chem Phys. 2004 Apr 14; 4(3):589-608.
5. Barnes I, Hjorth J, Mihalopoulos N. Dimethyl sulfide and Dimethyl sulfoxide and their oxidation in the atmosphere. Chem Rev. 2006; 106(3):940-75. PMID: 16522014
6. Andreae MO. The ocean as a source of atmospheric sulfur compounds. In: Patrick Buat-Ménard, editor. The role of air-sea exchange in geochemical cycling. 1986. p. 331-62.
7. Hynes AJ, Wine PH, Semmes DH. kinetics and mechanism of OH reactions with organic sulfides. J Phys Chem. 1986; 90(23):4148-56.
8. Koga S, Tanaka H. numerical study of the oxidation process of dimethylsulfide in the marine atmosphere. J Atmos Chem. 1993; 17(3):201-28.
9. Mihalopoulos N, Nguyen BC, Boissard C, Putaud JP, Belviso S. Field study of dimethylsulfide oxidation in the boundary layer: variations of dimethylsulfide, methanesulfonic acid, sulfur dioxide, non-sea-salt sulfate and aitken nuclei at a coastal site. J Atmos Chem. 1992; 14(1-4):459-77.
10. Kelly DP, Murrell JC. Microbial metabolism of methanesulfonic acid. Arch Microbiol. 1999; 5(6):341-8.
11. Chen X, Minofar B, Jungwirth P, Allen HC. Interfacial molecular organization at aqueous solution surfaces of atmospherically relevant dimethyl sulfoxide and methanesulfonic acid using sum frequency spectroscopy and molecular dynamics simulation. J Phyl Chem. 2010; 114(47):15546-53. doi: 10. 1021/jp1078339 PMID: 21062065
12. Charlson RJ, Lovelock JE, Andreae MO, Warren SG. Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate. Nature. 1987; 326:655-61.
13. Langner J, Rodhe H. A global three-dimensional model of the tropospheric sulfur cycle. J Atmos Chem. 1991; 13:225-63.
14. Whung PY, Saltzman ES, Spencer MJ, Mayewski PA. Two-hundred-year record of biogenic sulfur in a south greenland ice core (20D). J Geophys Res. 1994; 99(D1):1147-56.
15. Leitão E, Moradas-Ferreira P, De Marco P. Evidence of methanesulfonate utilizers in the Sargasso Sea metagenome. J Basic Microbiol. 2009 Sep; 49(Suppl 1):S24-30. doi: 10.1002/jobm.200800223 PMID: 19322831
16. Legrand M, Feniet-Saigne C. Methanesulfonic acid in soth polar snow layers: a record of strong El Nino? Geophys Res. 1991; 18(2):187-90.
17. Kelly DP, Baker SC. The organosulphur cycle: aerobic and anaerobic processes leading to turnover of C1-Sulphur compounds. FEMS Microbiol. 1990; 87(3-4):241-6.
18. De Marco P, Moradas-Ferreira P, Higgins TP, McDonald I, Kenna EM, Murrell JC. Molecular analysis of a novel methanesulfonic acid monooxygenase from the methylotroph Methylosulfonomonas methylovora. J Bacteriol. 1999 Apr; 181(7):2244-51. PMID: 10094704
19. Baker SC, Kelly DP, Murrell JC. Microbial degradation of methanesulphonic acid: a missing link in the biogeochemical suphur cycle. Nature. 1991; 350:627-8.
20. Thompson AS, Owens NJP, Murrell JC. Isolation and characterization ofmethanesulfonic Acid-degrading bacteria from themarine environment. Appl EnvironMicrobiol. 1995 Jun; 61(6):2388-93. PMID: 16535055
21. Holmes AJ, Kelly DP, Baker SC, Thompson AS, De Marco P, Kenna EM, et al. and Marinosulfonomonas methylotropha gen. nov., sp. nov.: novel methylotrophs able to grow on methanesulfonic acid. Arch Microbiol. 1997; 167:46-53. PMID: 9000341
22. Higgins TP, De Marco P, Murrell JC. Purification and molecular characterization of the electron transfer protein ofmethanesulfonic acid monooxygenase. J Bacteriol. 1997Mar; 179(6):1974-9. PMID: 9068643
23. Murrell JC, Higgins T, Kelly DP. Bacterial metabolism of methanesulfonic acid. Microbiol Atmos Trace Gases. 1996; 39:243-53.
24. Baxter NJ, Scanlan J, De Marco P, Wood AP, Murrell JC. Duplicate copies of genes encoding methanesulfonate monooxygenase in Marinosulfonomonas methylotropha strain TR3 and detection of methanesulfonate utilizers in the environment. Appl Environ Microbiol. 2002 Jan; 68(1):289-96. PMID: 11772638
25. De Marco P, Murrell JC, Bordalo AA, Moradas-Ferreira P. Isolation and characterization of two new methanesulfonic acid-degrading bacterial isolates from a Portuguese soil sample. Arch Microbiol. 2000 Feb; 173(2):146-53. PMID: 10795686
26. Moosvi SA, Pacheco CC, McDonald IR, De Marco P, Pearce DA, Kelly DP, et al. Isolation and properties of methanesulfonate-degrading Afipia felis from Antarctica and comparison with other strains of A. felis. Environ Microbiol. 2005 Jan; 7(1):22-33. PMID: 15643932
27. Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen J a, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 2004 Apr 2; 304(5667):66-74. PMID: 15001713
28. Oh H-M, Kwon KK, Kang I, Kang SG, Lee J-H, Kim S-J, et al. Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria. J Bacteriol. 2010 Jun; 192(12):3240-1. doi: 10.1128/JB.00347-10 PMID: 20382761
29. Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 2007 Mar; 5(3):e77. PMID: 17355176
30. Kang I, Oh H-M, Kang D, Cho J-C. Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans. Proc Natl Acad Sci U S A. 2013 Jul 23; 110(30):12343-8. doi: 10.1073/pnas. 1219930110 PMID: 23798439
31. Kane SR, Chakicherla AY, Chain PSG, Schmidt R, Shin MW, Legler TC, et al. Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J Bacteriol. 2007 Mar; 189(5):1931-45. PMID: 17158667
32. KittichotiratW, Good NM, Hall R, Bringel F, Lajus A, Médigue C, et al. Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales. J Bacteriol. 2011 Sep; 193(17):4541-2. doi: 10.1128/JB.05331-11 PMID: 21725020
33. Jamshad M, De Marco P, Pacheco CC, Hanczar T, Murrell JC. Identification, mutagenesis, and transcriptional analysis of the methanesulfonate transport operon of Methylosulfonomonas methylovora. Appl Environ Microbiol. 2006 Jan; 72(1):276-83. PMID: 16391054
34. Gifford SM, Sharma S, Booth M, Moran MA. Expression patterns reveal niche diversification in a marine microbial assemblage. ISME J. Nature Publishing Group; 2013 Feb; 7(2):281-98.
35. Kelly DP, Baker SC, Trickett J, Davey M, Murrell JC. Methanesulphonate utilization by a novel methylotrophic bacterium involves an unusual monooxygenase. Microbiology. 1994 Jun 1; 140(6):1419-26.
36. De Marco P, Pacheco CC, Figueiredo AR, Moradas-Ferreira P. Novel pollutant-resistant methylotrophic bacteria for use in bioremediation. FEMS Microbiol Lett. 2004 May 1; 234(1):75-80. PMID: 15109722
37. Larking MA, Blackshields G, Brown NP, Chenna R, McGettigan GA, McWilliam H, et al. ClustalW and ClustalX version 2. Bioinformatics. 2007; 23(21):2947-8. PMID: 17846036
38. Wernersson R, Pedersen AG. RevTrans-Constructing alignments of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 2003; 31(13):3537-9. PMID: 12824361
39. McGinnis S, Madden TL. BLAST: At the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 2004; 32:20-5.
40. Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007; 23(6):673-9. PMID: 17237039
41. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2010; 39(Issue suppl 1):38-51.
42. Néron B, Hervé M, Maufrais C, Joly N, Maupetit J, Letort S, et al. Mobyle: a new full web bioinformatics framework. Bioinformatics. 2009; 25:3005-11. doi: 10.1093/bioinformatics/btp493 PMID: 19689959
43. Rappé MS, Giovannoni SJ. The uncultured microbial majority. Annu Rev Microbiol. 2003 Jan; 57:369-94, PMID: 14527284
44. Jamshad M, Murrell JC, Fülöp V. Purification and crystallization of the hydroxylase component of the methanesulfonate monooxygenase from Methylosulfonomonas methylovora strain M2. Protein Expr Purif. 2007; 52(2):472-7. PMID: 17169571
45. Friedrich CG, Quentmeier A, Bardischewsky F, Rother D, Orawski G, Hellwig P, et al. Redox control of chemotrophic sulfur oxidation of Paracoccus pantotrophus. In: Dahl C, Friedrich CG, editors. Microbial Sulfur Metabolism. Springer Berlin Heidelberg; 2008. p. 139-50.
46. Denger K, Weinitschke S, Smits THM, Schleheck D, Cook AM. Bacterial sulfite dehydrogenases in organotrophic metabolism: separation and identification in Cupriavidus necator H16 and in Delftia acidovorans SPH-1. Microbiology. 2008 Jan; 154(Pt 1):256-63. doi: 10.1099/mic.0.2007/011650-0 PMID: 18174144
47. Reichenbecher W, Murrell JC. Linear alkanesulfonates as carbon and energy sources for gram-positive and gram-negative bacteria. Arch Microbiol. 1999; 171(6):430-8. PMID: 10369899
48. Reichenbecher W, Kelly DP, Murrell JC. Desulfonation of propanesulfonic acid by Comamonas acidovorans strain P53: evidence for an alkanesulfonate sulfonatase and an atypical sulfite dehydrogenase. Arch Microbiol. 1999; 172(6):387-92. PMID: 10591848