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Volumn 58, Issue 5, 2015, Pages 253-257

Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing

Author keywords

CEGMA; Genome assembly; Genome scaffolding; Mate pair library; Tagmentation

Indexed keywords

DEOXYRIBONUCLEASE I; TATA BINDING PROTEIN; TRANSCRIPTOME; DNA;

EID: 84929237686     PISSN: 07366205     EISSN: 19409818     Source Type: Journal    
DOI: 10.2144/000114288     Document Type: Article
Times cited : (12)

References (10)
  • 1
    • 84859178440 scopus 로고    scopus 로고
    • De novo genome assembly: What every biologist should know
    • Baker, M. 2012. De novo genome assembly: what every biologist should know. Nat. Methods 9:333-337.
    • (2012) Nat. Methods , vol.9 , pp. 333-337
    • Baker, M.1
  • 6
    • 84892405230 scopus 로고    scopus 로고
    • NextClip: An analysis and read preparation tool for Nextera Long Mate Pair libraries
    • Leggett, R.M., B.J. Clavijo, L. Clissold, M.D. Clark, and M. Caccamo. 2014. NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries. Bioinformatics 30:566-568.
    • (2014) Bioinformatics , vol.30 , pp. 566-568
    • Leggett, R.M.1    Clavijo, B.J.2    Clissold, L.3    Clark, M.D.4    Caccamo, M.5
  • 7
    • 84905667070 scopus 로고    scopus 로고
    • Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
    • Kajitani, R., K. Toshimoto, H. Noguchi, A. Toyoda, Y. Ogura, M. Okuno, M. Yabana, M. Harada, et al. 2014. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads. Genome Res. 24:1384-1395.
    • (2014) Genome Res , vol.24 , pp. 1384-1395
    • Kajitani, R.1    Toshimoto, K.2    Noguchi, H.3    Toyoda, A.4    Ogura, Y.5    Okuno, M.6    Yabana, M.7    Harada, M.8
  • 8
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra, G., K. Bradnam, and I. Korf. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23:1061-1067.
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 10
    • 84913593681 scopus 로고    scopus 로고
    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
    • Picelli, S., Å.K. Björklund, B. Reinius, S. Sagasser, G. Winberg, and R. Sandberg. 2014. Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. Genome Res. 24:2033-2040.
    • (2014) Genome Res , vol.24 , pp. 2033-2040
    • Picelli, S.1    Björklund, Å.K.2    Reinius, B.3    Sagasser, S.4    Winberg, G.5    Sandberg, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.