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Volumn 9, Issue 12, 2014, Pages

Refinement of the MHC risk map in a scandinavian primary sclerosing cholangitis population

Author keywords

[No Author keywords available]

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA DQB1 ANTIGEN; HLA DRB1 ANTIGEN; HLA DRB3 ANTIGEN; NOTCH4 RECEPTOR; NOTCH RECEPTOR; NOTCH4 PROTEIN, HUMAN; ONCOPROTEIN;

EID: 84929196931     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114486     Document Type: Article
Times cited : (23)

References (39)
  • 2
    • 0033755636 scopus 로고    scopus 로고
    • Increased frequency of autoimmune diseases in patients with primary sclerosing cholangitis
    • Saarinen S, Olerup O, Broome U (2000) Increased frequency of autoimmune diseases in patients with primary sclerosing cholangitis. Am J Gastroenterol 95: 3195-3199.
    • (2000) Am J Gastroenterol , vol.95 , pp. 3195-3199
    • Saarinen, S.1    Olerup, O.2    Broome, U.3
  • 3
    • 84878725018 scopus 로고    scopus 로고
    • Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
    • Liu JZ, Hov JR, Folseraas T, Ellinghaus E, Rushbrook SM, et al. (2013) Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis. Nat Genet 45: 670-675.
    • (2013) Nat Genet , vol.45 , pp. 670-675
    • Liu, J.Z.1    Hov, J.R.2    Folseraas, T.3    Ellinghaus, E.4    Rushbrook, S.M.5
  • 5
    • 84875410166 scopus 로고    scopus 로고
    • Triggers and drivers of autoimmunity: Lessons from coeliac disease
    • Sollid LM, Jabri B (2013) Triggers and drivers of autoimmunity: lessons from coeliac disease. Nat Rev Immunol 13: 294-302.
    • (2013) Nat Rev Immunol , vol.13 , pp. 294-302
    • Sollid, L.M.1    Jabri, B.2
  • 6
    • 84874783317 scopus 로고    scopus 로고
    • Immuno chip study implicates antigen presentation to t cells in narcolepsy
    • Faraco J, Lin L, Kornum BR, Kenny EE, Trynka G, et al. (2013) Immuno Chip study implicates antigen presentation to T cells in narcolepsy. PLoS Genet 9: E1003270.
    • (2013) Plos Genet , vol.9 , pp. e1003270
    • Faraco, J.1    Lin, L.2    Kornum, B.R.3    Kenny, E.E.4    Trynka, G.5
  • 7
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • Howie B, Marchini J, Stephens M (2011) Genotype imputation with thousands of genomes. G3 1: 457- 470.
    • (2011) G3 , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 10
    • 36849012027 scopus 로고    scopus 로고
    • Localization of type 1 diabetes susceptibility to the MHC class i genes HLA-B and HLA-A
    • Nejentsev S, Howson JM, Walker NM, Szeszko J, Field SF, et al. (2007) Localization of type 1 diabetes susceptibility to the MHC class I genes HLA-B and HLA-A. Nature 450: 887-892.
    • (2007) Nature , vol.450 , pp. 887-892
    • Nejentsev, S.1    Howson, J.M.2    Walker, N.M.3    Szeszko, J.4    Field, S.F.5
  • 11
    • 58549090910 scopus 로고    scopus 로고
    • Type 1 diabetes genetics C(2009) confirmation of HLA class II independent type 1 diabetes associations in the major histocompatibility complex including HLA-B and HLA-A
    • Howson JM, Walker NM, Clayton D, Todd JA, Type 1 Diabetes Genetics C(2009) Confirmation of HLA class II independent type 1 diabetes associations in the major histocompatibility complex including HLA-B and HLA-A. Diabetes, obesity & metabolism 11 Suppl 1: 31-45.
    • Diabetes, Obesity & Metabolism , vol.11 , pp. 31-45
    • Howson, J.M.1    Walker, N.M.2    Clayton, D.3    Todd, J.A.4
  • 12
    • 84862776511 scopus 로고    scopus 로고
    • Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis
    • Raychaudhuri S, Sandor C, Stahl EA, Freudenberg J, Lee HS, et al. (2012) Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis. Nat Genet 44: 291-296.
    • (2012) Nat Genet , vol.44 , pp. 291-296
    • Raychaudhuri, S.1    Sandor, C.2    Stahl, E.A.3    Freudenberg, J.4    Lee, H.S.5
  • 13
    • 80051684615 scopus 로고    scopus 로고
    • Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis
    • International Multiple Sclerosis Genetics C, Wellcome Trust Case Control C
    • International Multiple Sclerosis Genetics C, Wellcome Trust Case Control C, Sawcer S, Hellenthal G, Pirinen M, et al. (2011) Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature 476: 214-219.
    • (2011) Nature , vol.476 , pp. 214-219
    • Sawcer, S.1    Hellenthal, G.2    Pirinen, M.3
  • 15
    • 0036936696 scopus 로고    scopus 로고
    • Evaluation of the role of MHC class II alleles, haplotypes and selected amino acid sequences in primary sclerosing cholangitis
    • Donaldson PT, Norris S (2002) Evaluation of the Role of MHC Class II Alleles, Haplotypes and Selected Amino Acid Sequences in Primary Sclerosing Cholangitis. Autoimmunity 35: 555-564.
    • (2002) Autoimmunity , vol.35 , pp. 555-564
    • Donaldson, P.T.1    Norris, S.2
  • 16
    • 0032907060 scopus 로고    scopus 로고
    • HLA class II haplotypes in primary sclerosing cholangitis patients from five European populations
    • Spurkland A, Saarinen S, Boberg KM, Mitchell S, Broome U, et al. (1999) HLA class II haplotypes in primary sclerosing cholangitis patients from five European populations. Tissue Antigens 53: 459-469.
    • (1999) Tissue Antigens , vol.53 , pp. 459-469
    • Spurkland, A.1    Saarinen, S.2    Boberg, K.M.3    Mitchell, S.4    Broome, U.5
  • 17
    • 33846597660 scopus 로고    scopus 로고
    • Primary sclerosing cholangitis is associated with extended HLA-DR3 and HLA-DR6 haplotypes
    • Wiencke K, Karlsen TH, Boberg KM, Thorsby E, Schrumpf E, et al. (2007) Primary sclerosing cholangitis is associated with extended HLA-DR3 and HLA-DR6 haplotypes. Tissue Antigens 69: 161- 169.
    • (2007) Tissue Antigens , vol.69 , pp. 161-169
    • Wiencke, K.1    Karlsen, T.H.2    Boberg, K.M.3    Thorsby, E.4    Schrumpf, E.5
  • 18
    • 79957497646 scopus 로고    scopus 로고
    • Electrostatic modifications of the human leukocyte antigen-DR p9 peptide-binding pocket and susceptibility to primary sclerosing cholangitis
    • Hov JR, Kosmoliaptsis V, Traherne JA, Olsson M, Boberg KM, et al. (2011) Electrostatic modifications of the human leukocyte antigen-DR P9 peptide-binding pocket and susceptibility to primary sclerosing cholangitis. Hepatology 53: 1967-1976.
    • (2011) Hepatology , vol.53 , pp. 1967-1976
    • Hov, J.R.1    Kosmoliaptsis, V.2    Traherne, J.A.3    Olsson, M.4    Boberg, K.M.5
  • 19
    • 34047187448 scopus 로고    scopus 로고
    • Particular genetic variants of ligands for natural killer cell receptors may contribute to the HLA associated risk of primary sclerosing cholangitis
    • Karlsen TH, Boberg KM, Olsson M, Sun J-Y, Senitzer D, et al. (2007) Particular genetic variants of ligands for natural killer cell receptors may contribute to the HLA associated risk of primary sclerosing cholangitis. J Hepatol 46: 899-906.
    • (2007) J Hepatol , vol.46 , pp. 899-906
    • Karlsen, T.H.1    Boberg, K.M.2    Olsson, M.3    Sun, J.-Y.4    Senitzer, D.5
  • 20
    • 0034813574 scopus 로고    scopus 로고
    • Primary sclerosing cholangitis is associated to an extended B8-DR3 haplotype including particular MICA and MICB alleles
    • Wiencke K, Spurkland A, Schrumpf E, Boberg KM (2001) Primary sclerosing cholangitis is associated to an extended B8-DR3 haplotype including particular MICA and MICB alleles. Hepatology 34: 625-630.
    • (2001) Hepatology , vol.34 , pp. 625-630
    • Wiencke, K.1    Spurkland, A.2    Schrumpf, E.3    Boberg, K.M.4
  • 21
    • 2442551586 scopus 로고    scopus 로고
    • A multicenter international evaluation of single-tube amplification protocols for sequencing-based typing of HLA-DRB1 and HLA-DRB3, 4, 5
    • Sayer DC, Whidborne R, De Santis D, Rozemuller EH, Christiansen FT, et al. (2004) A multicenter international evaluation of single-tube amplification protocols for sequencing-based typing of HLA-DRB1 and HLA-DRB3, 4, 5. Tissue Antigens 63: 412-423.
    • (2004) Tissue Antigens , vol.63 , pp. 412-423
    • Sayer, D.C.1    Whidborne, R.2    De Santis, D.3    Rozemuller, E.H.4    Christiansen, F.T.5
  • 22
    • 8144223485 scopus 로고    scopus 로고
    • Assign 2.0: Software for the analysis of phred quality values for quality control of HLA sequencing-based typing
    • Sayer DC, Goodridge DM, Christiansen FT (2004) Assign 2.0: Software for the analysis of Phred quality values for quality control of HLA sequencing-based typing. Tissue Antigens 64: 556-565.
    • (2004) Tissue Antigens , vol.64 , pp. 556-565
    • Sayer, D.C.1    Goodridge, D.M.2    Christiansen, F.T.3
  • 23
    • 34247560769 scopus 로고    scopus 로고
    • Different HLA class II associations in ulcerative colitis patients with and without primary sclerosing cholangitis
    • Karlsen TH, Boberg KM, Vatn M, Bergquist A, Hampe J, et al. (2007) Different HLA class II associations in ulcerative colitis patients with and without primary sclerosing cholangitis. Genes Immun 8: 275-278.
    • (2007) Genes Immun , vol.8 , pp. 275-278
    • Karlsen, T.H.1    Boberg, K.M.2    Vatn, M.3    Bergquist, A.4    Hampe, J.5
  • 25
    • 78649508578 scopus 로고    scopus 로고
    • Mach: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genetic epidemiology 34: 816-834.
    • (2010) Genetic Epidemiology , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 26
    • 84864417548 scopus 로고    scopus 로고
    • Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
    • Howie B, Fuchsberger C, Stephens M, Marchini J, Abecasis GR (2012) Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat Genet 44: 955-959.
    • (2012) Nat Genet , vol.44 , pp. 955-959
    • Howie, B.1    Fuchsberger, C.2    Stephens, M.3    Marchini, J.4    Abecasis, G.R.5
  • 28
    • 0036137030 scopus 로고    scopus 로고
    • A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: Application to HLA in type 1 diabetes
    • Cordell HJ, Clayton DG (2002) A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: Application to HLA in type 1 diabetes. Am J Hum Genet 70: 124-141.
    • (2002) Am J Hum Genet , vol.70 , pp. 124-141
    • Cordell, H.J.1    Clayton, D.G.2
  • 30
    • 77249164222 scopus 로고    scopus 로고
    • Genome-wide association analysis in primary sclerosing cholangitis
    • Karlsen TH, Franke A, Melum E, Kaser A, Hov JR, et al. (2010) Genome-Wide Association Analysis in Primary Sclerosing Cholangitis. Gastroenterology 138: 1102-1111.
    • (2010) Gastroenterology , vol.138 , pp. 1102-1111
    • Karlsen, T.H.1    Franke, A.2    Melum, E.3    Kaser, A.4    Hov, J.R.5
  • 31
    • 78651227093 scopus 로고    scopus 로고
    • Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci
    • Melum E, Franke A, Schramm C, Weismuller TJ, Gotthardt DN, et al. (2011) Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci. Nat Genet 43: 17-19.
    • (2011) Nat Genet , vol.43 , pp. 17-19
    • Melum, E.1    Franke, A.2    Schramm, C.3    Weismuller, T.J.4    Gotthardt, D.N.5
  • 32
    • 84873696767 scopus 로고    scopus 로고
    • Early signaling events that underlie fate decisions of naive CD4(+) T cells toward distinct t-helper cell subsets
    • Yamane H, Paul WE (2013) Early signaling events that underlie fate decisions of naive CD4(+) T cells toward distinct T-helper cell subsets. Immunol Rev 252: 12-23.
    • (2013) Immunol Rev , vol.252 , pp. 12-23
    • Yamane, H.1    Paul, W.E.2
  • 33
    • 84861955655 scopus 로고    scopus 로고
    • A re-review of the association between the NOTCH4 locus and schizophrenia. American journal of medical genetics Part B, neuropsychiatric genetics: The official publication of the international
    • Shayevitz C, Cohen OS, Faraone SV, Glatt SJ (2012) A re-review of the association between the NOTCH4 locus and schizophrenia. American journal of medical genetics Part B, Neuropsychiatric genetics: The official publication of the International Society of Psychiatric Genetics 159B: 477-483.
    • (2012) Society of Psychiatric Genetics , vol.159 B , pp. 477-483
    • Shayevitz, C.1    Cohen, O.S.2    Faraone, S.V.3    Glatt, S.J.4
  • 34
    • 58549114021 scopus 로고    scopus 로고
    • Several loci in the HLA class III region are associated with t1d risk after adjusting for DRB1-DQB1
    • Type 1 Diabetes Genetics C
    • Valdes AM, Thomson G, Type 1 Diabetes Genetics C(2009) Several loci in the HLA class III region are associated with T1D risk after adjusting for DRB1-DQB1. Diabetes, obesity & metabolism 11 Suppl 1: 46-52.
    • (2009) Diabetes, Obesity & Metabolism , vol.11 , pp. 46-52
    • Valdes, A.M.1    Thomson, G.2
  • 35
    • 84856527635 scopus 로고    scopus 로고
    • Genetics of psoriasis and psoriatic arthritis: A report from the GRAPPA 2010 annual meeting
    • Rahman P, Elder JT (2012) Genetics of psoriasis and psoriatic arthritis: A report from the GRAPPA 2010 annual meeting. J Rheumatol 39: 431-433.
    • (2012) J Rheumatol , vol.39 , pp. 431-433
    • Rahman, P.1    Elder, J.T.2
  • 36
    • 78349269179 scopus 로고    scopus 로고
    • Primary sclerosing cholangitis in genetically diverse populations listed for liver transplantation: Unique clinical and human leukocyte antigen associations
    • Bowlus CL, Li C-S, Karlsen TH, Lie BA, Selmi C (2010) Primary sclerosing cholangitis in genetically diverse populations listed for liver transplantation: Unique clinical and human leukocyte antigen associations. Liver Transplantation 16: 1324-1330.
    • (2010) Liver Transplantation , vol.16 , pp. 1324-1330
    • Bowlus, C.L.1    Li, C.-S.2    Karlsen, T.H.3    Lie, B.A.4    Selmi, C.5
  • 37
    • 0034797377 scopus 로고    scopus 로고
    • Antigen, allele, and haplotype frequencies report of the ASHI minority antigens workshops: Part 1, African-Americans
    • Zachary AA, Bias WB, Johnson A, Rose SM, Leffell MS (2001) Antigen, allele, and haplotype frequencies report of the ASHI minority antigens workshops: Part 1, African-Americans. Human immunology 62: 1127-1136.
    • (2001) Human Immunology , vol.62 , pp. 1127-1136
    • Zachary, A.A.1    Bias, W.B.2    Johnson, A.3    Rose, S.M.4    Leffell, M.S.5
  • 39
    • 84892976830 scopus 로고    scopus 로고
    • HLA typing by next-generation sequencing - getting closer to reality
    • Gabriel C, Furst D, Fae I, Wenda S, Zollikofer C, et al. (2014) HLA typing by next-generation sequencing - getting closer to reality. Tissue Antigens 83: 65-75.
    • (2014) Tissue Antigens , vol.83 , pp. 65-75
    • Gabriel, C.1    Furst, D.2    Fae, I.3    Wenda, S.4    Zollikofer, C.5


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