Multifunctional reagents for quantitative proteome-wide analysis of protein modification in human cells and dynamic profiling of protein lipidation during vertebrate development

Angewandte Chemie - International Edition

Volumn 54, Issue 20, 2015, Pages 5948-5951

  Broncel, Malgorzata ^a   Serwa, Remigiusz A ^a   Ciepla, Paulina ^a   Krause, Eberhard ^b   Dallman, Margaret J ^a   Magee, Anthony I ^c   Tate, Edward W ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b LEIBNIZ INSTITUT FÜR MOLEKULARE PHARMAKOLOGIE   (Germany)

^c NATIONAL HEART AND LUNG INSTITUTE   (United Kingdom)

Author keywords

capture reagents; lipidation; mass spectrometry; post translational modification; proteomics

Indexed keywords

CELL CULTURE; MASS SPECTROMETRY; MOLECULAR BIOLOGY; SPECTROMETRY;

CAPTURE REAGENTS; LIPIDATION; MULTIFUNCTIONAL REAGENTS; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN MODIFICATIONS; PROTEOME-WIDE ANALYSIS; PROTEOMICS; VERTEBRATE DEVELOPMENT;

PROTEINS;

DYES, REAGENTS, INDICATORS, MARKERS AND BUFFERS; LIPID; PROTEOME;

CHEMICAL STRUCTURE; CHEMISTRY; EMBRYO DEVELOPMENT; HEK293 CELL LINE; HELA CELL LINE; HUMAN; MASS SPECTROMETRY; MCF-7 CELL LINE; METABOLISM; PROCEDURES; PROTEOMICS;

EMBRYONIC DEVELOPMENT; HEK293 CELLS; HELA CELLS; HUMANS; INDICATORS AND REAGENTS; LIPIDS; MASS SPECTROMETRY; MCF-7 CELLS; MOLECULAR STRUCTURE; PROTEOME; PROTEOMICS;

EID: 84928896401     PISSN: 14337851     EISSN: 15213773     Source Type: Journal    
DOI: 10.1002/anie.201500342     Document Type: Article

References (18)

1. H. Lin, X. Su, B. He, ACS Chem. Biol. 2012, 7, 947-960.
2. H. P. Lin, S. C. Hsu, J. C. Wu, I. J. Sheen, B. S. Yan, W. J. Syu, J. Gen. Virol. 1999, 80, 91-96.
3. R. N. Hannoush, J. Sun, Nat. Chem. Biol. 2010, 6, 498-506.
4. E. W. Tate, K. A. Kalesh, T. Lanyon-Hogg, E. M. Storck, E. Thinon, Curr. Opin. Chem. Biol. 2015, 24, 48-57.
5. M. H. Wright, W. P. Heal, D. J. Mann, E. W. Tate, J. Chem. Biol. 2010, 3, 19-35.
6. M. H. Wright, B. Clough, M. D. Rackham, K. Rangachari, J. A. Brannigan, M. Grainger, D. K. Moss, A. R. Bottrill, W. P. Heal, M. Broncel, et al., Nat. Chem. 2014, 6, 112-121
7. E. Thinon, R. A. Serwa, M. Broncel, J. A. Brannigan, U. Brassat, M. H. Wright, W. P. Heal, A. J. Wilkinson, D. J. Mann, E. W. Tate, Nat. Commun. 2014, 5, 4919.
8. J. P. Wilson, A. S. Raghavan, Y. Y. Yang, G. Charron, H. C. Hang, Mol. Cell. Proteomics 2011, 10, M 110 001198.
9. W. P. Heal, M. H. Wright, E. Thinon, E. W. Tate, Nat. Protoc. 2012, 7, 105-117.
10. Uniprot.org.
11. J. Cox, M. Mann, Nat. Biotechnol. 2008, 26, 1367-1372
12. J. Zhang, L. Xin, B. Shan, W. Chen, M. Xie, D. Yuen, W. Zhang, Z. Zhang, G. A. Lajoie, B. Ma, Mol. Cell. Proteomics 2012, 11, M 111 010587.
13. Distinct user-defined sets of parameters were chosen (typically default) to perform database searches with MaxQuant1.5 and PEAKS7. The outcome is therefore not directly comparable. See the Supporting Information for details.
14. P. J. Boersema, R. Raijmakers, S. Lemeer, S. Mohammed, A. J. Heck, Nat. Protoc. 2009, 4, 484-494.
15. A. E. Speers, B. F. Cravatt, J. Am. Chem. Soc. 2005, 127, 10018-10019
16. D. C. Dieterich, A. J. Link, J. Graumann, D. A. Tirrell, E. M. Schuman, Proc. Natl. Acad. Sci. USA 2006, 103, 9482-9487
17. T. Zheng, H. Jiang, P. Wu, Bioconjugate Chem. 2013, 24, 859-864.
18. J. A. Vizcaíno, E. W. Deutsch, R. Wang, A. Csordas, F. Reisinger, D. Ríos, J. A. Dianes, Z. Sun, T. Farrah, N. Bandeira, et al., Nat. Biotechnol. 2014, 30, 223-226.