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Volumn 9, Issue 5, 2015, Pages 1130-1140

Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; GENE EXPRESSION; GENETIC DIFFERENTIATION; MICROBIAL ACTIVITY; PHYLOGENETICS; RELATEDNESS; SURVIVORSHIP;

EID: 84928591252     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.204     Document Type: Article
Times cited : (40)

References (35)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. (2010). Differential expression analysis for sequence count data. Genome Biol 11: R106
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 5
    • 80052613392 scopus 로고    scopus 로고
    • Characterization of the cryptic Escherichia lineages: Rapid identification and prevalence
    • Clermont O, Gordon DM, Brisse S, Walk ST, Denamur E. (2011). Characterization of the cryptic Escherichia lineages: rapid identification and prevalence. Environ Microbiol 13: 2468-2477
    • (2011) Environ Microbiol , vol.13 , pp. 2468-2477
    • Clermont, O.1    Gordon, D.M.2    Brisse, S.3    Walk, S.T.4    Denamur, E.5
  • 6
    • 79961235998 scopus 로고    scopus 로고
    • Microbial genomics: E coli relatives out of doors and out of body
    • Cohan FM, Kopac SM. (2011). Microbial genomics: E. coli relatives out of doors and out of body. Curr Biol 21: 587-589
    • (2011) Curr Biol , vol.21 , pp. 587-589
    • Cohan, F.M.1    Kopac, S.M.2
  • 7
    • 0000326250 scopus 로고
    • The ecological and physiological significance of the growth of heterotrophic microorganisms with mixtures of substrates
    • Egli T. (1995). The ecological and physiological significance of the growth of heterotrophic microorganisms with mixtures of substrates. Adv Microb Ecol 14: 305-386
    • (1995) Adv Microb Ecol , vol.14 , pp. 305-386
    • Egli, T.1
  • 9
    • 0141817853 scopus 로고    scopus 로고
    • What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?
    • Ferenci T. (2003). What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?. Trends Microbiol 11: 457-461
    • (2003) Trends Microbiol , vol.11 , pp. 457-461
    • Ferenci, T.1
  • 10
    • 0000126987 scopus 로고
    • Analysis of polyamines in higher plants by high performance liquid chromatography
    • Flores HE, Galston AW. (1982). Analysis of polyamines in higher plants by high performance liquid chromatography. Plant Physiol 69: 701-706
    • (1982) Plant Physiol , vol.69 , pp. 701-706
    • Flores, H.E.1    Galston, A.W.2
  • 12
    • 84871599142 scopus 로고    scopus 로고
    • How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
    • Haas BJ, Chin M, Nusbaum C, Birren BW, Livny J. (2012). How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?. BMC Genomics 13: 734
    • (2012) BMC Genomics , vol.13 , pp. 734
    • Haas, B.J.1    Chin, M.2    Nusbaum, C.3    Birren, B.W.4    Livny, J.5
  • 13
    • 84864149030 scopus 로고    scopus 로고
    • Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields
    • Huwiler SG, Beyer C, Fröhlich J, Hennecke H, Egli T, Schürmann D et al. (2012). Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields. Bioelectromagnetics 33: 488-496
    • (2012) Bioelectromagnetics , vol.33 , pp. 488-496
    • Huwiler, S.G.1    Beyer, C.2    Fröhlich, J.3    Hennecke, H.4    Egli, T.5    Schürmann, D.6
  • 14
    • 25144518340 scopus 로고    scopus 로고
    • Global physiological analysis of carbon- and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization
    • Ihssen J, Egli T. (2005). Global physiological analysis of carbon- and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization. Environ Microbiol 7: 1568-1581
    • (2005) Environ Microbiol , vol.7 , pp. 1568-1581
    • Ihssen, J.1    Egli, T.2
  • 15
    • 3142675034 scopus 로고    scopus 로고
    • Specific growth rate and not cell density controls the general stress response in Escherichia coli
    • Ihssen J, Egli T. (2004). Specific growth rate and not cell density controls the general stress response in Escherichia coli. Microbiology 150: 1637-1648
    • (2004) Microbiology , vol.150 , pp. 1637-1648
    • Ihssen, J.1    Egli, T.2
  • 16
    • 34447500551 scopus 로고    scopus 로고
    • Comparative genomic hybridization and physiological characterization of environmental isolates indicate that significant (eco-)physiological properties are highly conserved in the species Escherichia coli
    • Ihssen J, Grasselli E, Bassin C, François P, Piffaretti JC, Köster W et al. (2007). Comparative genomic hybridization and physiological characterization of environmental isolates indicate that significant (eco-)physiological properties are highly conserved in the species Escherichia coli. Microbiology 153: 2052-2066
    • (2007) Microbiology , vol.153 , pp. 2052-2066
    • Ihssen, J.1    Grasselli, E.2    Bassin, C.3    François, P.4    Piffaretti, J.C.5    Köster, W.6
  • 17
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King M, Wilson A. (1975). Evolution at two levels in humans and chimpanzees. Science 188: 107-116
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.1    Wilson, A.2
  • 20
    • 0031719199 scopus 로고    scopus 로고
    • Growth kinetics of suspended microbial cells: From single-substratecontrolled growth to mixed-substrate kinetics
    • Kovárová-Kovar K, Egli T. (1998). Growth kinetics of suspended microbial cells: from single-substratecontrolled growth to mixed-substrate kinetics. Microbiol Mol Biol 62: 646-666
    • (1998) Microbiol Mol Biol , vol.62 , pp. 646-666
    • Kovárová-Kovar, K.1    Egli, T.2
  • 21
    • 0026020230 scopus 로고
    • Identification of a central regulator of stationary-phase gene expression in Escherichia coli
    • Lange R, Hengge-Aronis R. (1991). Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5: 49-59
    • (1991) Mol Microbiol , vol.5 , pp. 49-59
    • Lange, R.1    Hengge-Aronis, R.2
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 79955559191 scopus 로고    scopus 로고
    • Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
    • Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT. (2011). Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci USA 108: 7200-7205
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 7200-7205
    • Luo, C.1    Walk, S.T.2    Gordon, D.M.3    Feldgarden, M.4    Tiedje, J.M.5    Konstantinidis, K.T.6
  • 24
    • 0036181664 scopus 로고    scopus 로고
    • RpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
    • Notley-McRobb L, King T, Ferenci T. (2002). rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J Bacteriol 184: 806-811
    • (2002) J Bacteriol , vol.184 , pp. 806-811
    • Notley-Mcrobb, L.1    King, T.2    Ferenci, T.3
  • 25
    • 9244230099 scopus 로고    scopus 로고
    • Stationary-phase physiology
    • Nyström T. (2004). Stationary-phase physiology. Annu Rev Microbiol 58: 161-181
    • (2004) Annu Rev Microbiol , vol.58 , pp. 161-181
    • Nyström, T.1
  • 26
    • 75149149874 scopus 로고    scopus 로고
    • Deep RNA sequencing of L monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs
    • Oliver HF, Orsi RH, Ponnala L, Keich U, WangW, Sun Q et al. (2009). Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. BMC Genomics 10: 641
    • (2009) BMC Genomics , vol.10 , pp. 641
    • Oliver, H.F.1    Orsi, R.H.2    Ponnala, L.3    Keich, U.4    Wangw Sun, Q.5
  • 28
    • 0014689636 scopus 로고
    • Pleiotropic deficiency of carbohydrate utilization in an adenyl cyclase deficient mutant of Escherichia coli
    • Perlman R, Pastan I. (1969). Pleiotropic deficiency of carbohydrate utilization in an adenyl cyclase deficient mutant of Escherichia coli. Biochem Biophys Res Commun 37: 151-157
    • (1969) Biochem Biophys Res Commun , vol.37 , pp. 151-157
    • Perlman, R.1    Pastan, I.2
  • 29
    • 34548769341 scopus 로고    scopus 로고
    • Evolution of global regulatory networks during a longterm experiment with Escherichia coli
    • Philippe N, Crozat E, Lenski RE, Schneider D. (2007). Evolution of global regulatory networks during a longterm experiment with Escherichia coli. Bioessays 29: 846-860
    • (2007) Bioessays , vol.29 , pp. 846-860
    • Philippe, N.1    Crozat, E.2    Lenski, R.E.3    Schneider, D.4
  • 31
    • 51249106485 scopus 로고    scopus 로고
    • The loci of evolution: How predictable is genetic evolution?
    • Stern DL, Orgogozo V. (2008). The loci of evolution: how predictable is genetic evolution?. Evolution 62: 2155-2177
    • (2008) Evolution , vol.62 , pp. 2155-2177
    • Stern, D.L.1    Orgogozo, V.2
  • 32
    • 0000314099 scopus 로고
    • Ecological species, multispecies, and oaks
    • Van Valen L. (1976). Ecological species, multispecies, and oaks. Taxon 25: 233-239
    • (1976) Taxon , vol.25 , pp. 233-239
    • Van Valen, L.1
  • 33
    • 84868302146 scopus 로고    scopus 로고
    • Competition of Escherichia coli O157 with a drinking water bacterial community at low nutrient concentrations
    • Vital M, Hammes F, Egli T. (2012). Competition of Escherichia coli O157 with a drinking water bacterial community at low nutrient concentrations. Water Res 46: 6279-6290
    • (2012) Water Res , vol.46 , pp. 6279-6290
    • Vital, M.1    Hammes, F.2    Egli, T.3
  • 35
    • 4544388687 scopus 로고    scopus 로고
    • Dual nutrient limited growth: Models, experimental observations, and applications
    • Zinn M, Witholt B, Egli T. (2004). Dual nutrient limited growth: models, experimental observations, and applications. J Biotechnol 113: 263-279
    • (2004) J Biotechnol , vol.113 , pp. 263-279
    • Zinn, M.1    Witholt, B.2    Egli, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.