The role of community and population ecology in applying mycorrhizal fungi for improved food security

ISME Journal

Volumn 9, Issue 5, 2015, Pages 1053-1061

  Rodriguez, Alia ^a   Sanders, Ian R ^b  

^a UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^b UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ALTERNATIVE AGRICULTURE; ARBUSCULAR MYCORRHIZA; CROP YIELD; FOOD SECURITY; FUNGUS; SURVIVORSHIP; SYMBIOSIS; TROPICAL REGION;

FUNGI;

AGRICULTURE; CATERING SERVICE; ECOLOGY; ENVIRONMENT; FOOD HANDLING; METAGENOMICS; MICROBIOLOGY; MYCORRHIZA; PHYSIOLOGY; PLANT; TRENDS;

AGRICULTURE; ECOLOGY; ENVIRONMENT; FOOD SUPPLY; FOOD TECHNOLOGY; METAGENOMICS; MYCORRHIZAE; PLANTS;

EID: 84928582361     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.207     Document Type: Review

References (49)

1. An GH, Kobayashi S, Enoki H, Sonobe K, Muraki M, Karasawa T et al. (2010). How does arbuscular mycorrhizal colonization vary with host genotype?. An example based on maize (Zea mays) germplasms. Plant Soil 327: 441-453
2. Angelard C, Colard A, Niculita-Hirzel H, Croll D, Sanders IR. (2010). Segregation in a mycorrhizal fungus alters rice growth and symbiosis-specific gene transcription. Curr Biol 20: 1216-1221
3. Angelard C, Tanner CJ, Fontanillas P, Niculita-Hirzel H, Masclaux F, Sanders IR. (2014). Rapid genotypic change and plasticity in arbuscular mycorrhizal fungi is caused by a host shift and enhanced by segregation. ISME J 8: 284-294
4. Baird NA, Etter DP, Atwood TS, Currey MC, Shiver AL, Lewis ZA et al. (2008). Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376
5. Bennett AE, Daniell TJ, White PJ. (2013). Benefits of breeding crops for yield response to soil microorganisms. In De Bruijn FJ (ed) Molecular Ecology of the Rhizosphere. Wiley: New York, NY, USA, pp 17-27
6. Bever JD, Broadhurst LM, Thrall PH. (2013). Microbial phylotype composition and diversity predicts plant productivity and plant-soil feedbacks. Ecol Lett 16: 167-174
7. Bécard G, Fortin JA. (1988). Early events of vesicular arbuscular mycorrhiza formation on Ri T-DNA transformed roots. New Phytol 108: 211-218
8. Börstler B, Raab PA, Thiéry O, Morton JB, Redecker D. (2008). Genetic diversity of the arbuscular mycorrhizal fungus Glomus intraradices as determined by mitochondrial large subunit rRNA gene sequences is considerably higher than previously expected. New Phytol 180: 452-465
9. Cakmak I. (2002). Plant nutrition research: priorities to meet human needs for food in sustainable ways. Plant Soil 247: 3-24
10. Ceballos I, Ruiz M, Fernández C, Peña R, Rodriguez A, Sanders IR. (2013). The in vitro mass-prodcued model mycorrhizal fungus, Rhizophagus irregularis, significantly increases yields of the globally important food security crop cassava. PLoS One 8: e70633
11. Colard A, Angelard C, Sanders IR. (2011). Genetic exchange in an arbuscular mycorrhizal fungus results in increased rice growth and altered mycorrhizaspecific gene transcription. Appl Environ Microbiol 77: 6510-6515
12. Conniff R. (2013). Superdirt. Sci Am 2013: 76-79
13. Croll D, Giovannetti M, Koch AM, Sbrana C, Ehinger M, Lammers PJ et al. (2009). Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices. New Phytol 181: 924-937
14. Croll D,Wille L., Gamper H.A. Mathimaran N. Lammers P.J. Corradi N. et al. 2008. Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices New Phytol 178 672-687
15. FAO (2005). A review of cassava in Africa with country case studies on Nigeria, Ghana, the United Republic of Tanzania, Uganda and Benin. Proceedingsof the Validation Forum on the Global Cassava Development Strategy vol. 2. FAO Publications: Food and Agriculture Organization of the United Nations: Rome, Italy
16. FAO (2006). World Agriculture: Towards 2030/2050 (Interim Report). FAO Publications: Food and Agriculture Organization of the United Nations: Rome, Italy
17. FAO 2010 http: //www.fao.org/ag/AGP/AGPC/gcds/index-en.html (last accessed date 21 October 2014
18. Friesen DK, Rao IM, Thomas RJ, Oberson A, Sanz JI. (1997). Phosphorus acquisition and cycling in crop and pasture systems in low fertility tropical soils. Plant Soil 196: 289-294
19. Gianinazzi S, Vosátka M. (2004). Inoculum of arbuscular mycorrhizal fungi for production systems: science meets business. Can J Bot 82: 1264-1271
20. Gilbert N. (2009). The disappearing nutrient. Nature 461: 716-718
21. Godfray HCJ, Beddington JR, Crute IR, Haddad L, Lawrence D, Muir JF et al. (2010). Food security: the challenge of feeding 9 billion people. Science 327: 812-818
22. Gross G. (2010). Fears over phosphorus supplies. Curr Biol 20: 386-387
23. Hart M, Forsythe J, Oshowski B, Bü cking H, Jansa J, Kiers ET. (2013). Hiding in a crowd-does diversity facilitate persistence of a low-quality fungal partner in the mycorrhizal symbiosis?. Symbiosis 59: 47-56
24. Hetrick BAD, Wilson GWT, Gill BS, Cox TS. (1995). Chromosome location of lycorrhizal responsive genes in wheat. Can J Bot 73: 891-897
25. Howeler RH, Sieverding E. (1983). Potentials and limitations of mycorrhizal inoculation illustrated by experiments with field-grown cassava. Plant Soil 75: 245-261
26. Johnson NC, Angelard C, Sanders IR, Kiers ET. (2013). Predicting community and ecosystem outcomes of mycorrhizal responses to global change. Ecol Letts 16: 140-153
27. Johnson NC, Wilson GWT, Bowker MA, Wilson J, Miller RM. (2010). Resource limitation is a driver of local adaptation in mycorrhizal symbioses. Proc Natl Acad Sci USA 107: 2093-2098
28. Koch AM, Croll D, Sanders IR. (2006). Genetic variability in a population of arbuscular mycorrhizal fungi causes variation in plant growth. Ecol Lett 9: 103-110
29. Koch AM, Kuhn G, Fontanillas P, Fumagalli L, Goudet J, Sanders IR. (2004). High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi. Proc Natl Acad Sci USA 101: 2369-2374
30. Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjoller R et al. (2013). Fungal community analysis by high-Throughput sequencing of amplified markers-A user's guide. New Phytol 199: 288-299
31. Munkvold L, Kjoller R, Vestberg M, Rosendahl S, Jakobsen I. (2004). High functional diversity within species of arbuscular mycorrhizal fungi. New Phytol 164: 357-364
32. Öpik M, Zobel M, Cantero JJ, Davison J, Facelli JM, Hiiesalu I et al. (2013). Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi. Mycorrhiza 23: 411-430
33. Pagni M, Niculita-Hirzel H, Pellissier L, Dubuis A, Xenarios I, Guisan A et al. (2013). Density-based hierarchical clustering of pyro-sequences on a large scale-The case of fungal ITS1. Bioinformatics 29: 1268-1274
34. Pellegrino E, Turrini A, Gamper HA, Cafa G, Bonari E, Young JP et al (2012). Establishment, persistence and effectiveness of arbuscular mycorrhizal fungal inoculants in the field revealed using molecular genetic tracing and measurement of yield components. New Phytol 194: 810-822
35. Reid A, Greene S. (2013). How Can Microbes Help Feed the World?. American Society of Microbiology: Washington, DC
36. Rosendahl S. (2008). Communities, populations and individuals of arbuscular mycorrhizal fungi. New Phytol 178: 253-266
37. Rosendahl S, McGee P, Morton JB. (2009). Lack of global population genetic differentiation in the arbuscular mycorrhizal fungus Glomus mosseae suggests a recent range expansion which may have coincided with the spread of agriculture. Mol Ecol 18: 4316-4329
38. Salvioli A, Bonfante P. (2013). Systems biology and 'omics' tools: A cooperation for next-generation mycorrhizal studies. Plant Sci 203-204: 107-114
39. Schwartz MW, Hoeksema JD, Gehring CA, Johnson NC, Klironomos JN, Abbott LK et al. (2006). The promise and the potential consequences of the global transport of mycorrhizal fungal inoculum. Ecol Lett 9: 501-515
40. Sieverding E. (1991). Vesicular-Arbuscular Mycorrhiza Management in Tropical Agrosystems. Deutche Gesellschaft fü r Technische Zusammenarbeit (GTZ): Eschborn, Germany
41. Sieverding E, Howeler RH. (1985). Influence of species of VA mycorrhizal fungi on cassava yield response to phosphorus fertilization. Plant Soil 88: 213-221
42. Smith DP, Peay KG. (2014). Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing. PLoS One 9: e90234
43. Smith SE, Read DJ. (2008). The Mycorrhizal Symbiosis. Academic Press: San Diego, CA, USA.
44. The Future of Farming (2011). Final Project Report. The Government Office for Science: London, UK, p 211
45. Tilman D, Cassman KG, Matson PA, Naylor R, Polasky S. (2002). Agricultural sustainability and intensive production practices. Nature 418: 671-677
46. Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R et al. (2013). Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc Natl Acad Sci USA 110: 20117-20122
47. Van Der Heijden MGA, Boller T, Wiemken A, Sanders IR. (1998a). Different arbuscular mycorrhizal fungal species are potential determinants of plant community structure. Ecology 79: 2082-2091
48. Van Der Heijden MGA, Klironomos JN, Ursic M, Moutoglis P, Streitwolf-Engel R, Boller T et al. (1998b). Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature 396: 69-72
49. Zouari I, Salvioli A, Chialva M, Novero M, Miozzi L, Tenore GC et al. (2014). From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism. BMC Genom 15: 221