-
1
-
-
84857109507
-
Metabolic shift of polyphosphate-accumulating organisms with different levels of polyphosphate storage
-
Acevedo, B., Oehmen, A., Carvalho, G., Seco, A., Borrás, L., and Barat, R. (2012) Metabolic shift of polyphosphate-accumulating organisms with different levels of polyphosphate storage. Water Res 46: 1889-1900.
-
(2012)
Water Res
, vol.46
, pp. 1889-1900
-
-
Acevedo, B.1
Oehmen, A.2
Carvalho, G.3
Seco, A.4
Borrás, L.5
Barat, R.6
-
2
-
-
78149384003
-
Granule formation mechanisms within an aerobic wastewater system for phosphorus removal
-
Barr, J.J., Cook, A.E., and Bond, P.L. (2010) Granule formation mechanisms within an aerobic wastewater system for phosphorus removal. Appl Environ Microbiol 76: 7588-7597.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7588-7597
-
-
Barr, J.J.1
Cook, A.E.2
Bond, P.L.3
-
3
-
-
0027787624
-
Insertion of transposon Tn5 into a structural gene of the membrane-bound nitrate reductase of Thiosphaera pantotropha results in anaerobic overexpression of periplasmic nitrate reductase activity
-
Bell, L.C., Page, M.D., Berks, B.C., Richardson, D.J., and Ferguson, S.J. (1993) Insertion of transposon Tn5 into a structural gene of the membrane-bound nitrate reductase of Thiosphaera pantotropha results in anaerobic overexpression of periplasmic nitrate reductase activity. J Gen Microbiol 139: 3205-3214.
-
(1993)
J Gen Microbiol
, vol.139
, pp. 3205-3214
-
-
Bell, L.C.1
Page, M.D.2
Berks, B.C.3
Richardson, D.J.4
Ferguson, S.J.5
-
4
-
-
79951579402
-
Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes
-
Biegel, E., Schmidt, S., González, J.M., and Müller, V. (2010). Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci 68: 613-634.
-
(2010)
Cell Mol Life Sci
, vol.68
, pp. 613-634
-
-
Biegel, E.1
Schmidt, S.2
González, J.M.3
Müller, V.4
-
5
-
-
0029025721
-
Bacterial community structures of phosphate removing and non-phosphate removing activated sludges from sequencing batch reactors
-
Bond, P.L., Hugenholtz, P., Keller, J., and Blackall, L.L. (1995) Bacterial community structures of phosphate removing and non-phosphate removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61: 1910-1916.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1910-1916
-
-
Bond, P.L.1
Hugenholtz, P.2
Keller, J.3
Blackall, L.L.4
-
6
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., and Madden, T.L. (2009) BLAST+: architecture and applications. BMC Bioinformatics 10: 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
7
-
-
35348931750
-
Denitrifying phosphorus removal: linking the process performance with the microbial community structure
-
Carvalho, G., Lemos, P.C., Oehmen, A., and Reis, M.A.M. (2007) Denitrifying phosphorus removal: linking the process performance with the microbial community structure. Water Res 41: 4383-4396.
-
(2007)
Water Res
, vol.41
, pp. 4383-4396
-
-
Carvalho, G.1
Lemos, P.C.2
Oehmen, A.3
Reis, M.A.M.4
-
8
-
-
0023028385
-
Biochemical-model for enhanced biological phosphorus removal
-
Comeau, Y., Hall, K.J., Hancock, R.E.W., and Oldham, W.K. (1986) Biochemical-model for enhanced biological phosphorus removal. Water Res 20: 1511-1521.
-
(1986)
Water Res
, vol.20
, pp. 1511-1521
-
-
Comeau, Y.1
Hall, K.J.2
Hancock, R.E.W.3
Oldham, W.K.4
-
9
-
-
77952260431
-
Legionella pneumophila pangenome reveals strain-specific virulence factors
-
D'Auria, G., Jimenez-Hernandez, N., Peris-Bondia, F., Moya, A., and Latorre, A. (2010) Legionella pneumophila pangenome reveals strain-specific virulence factors. BMC Genomics 11: 181.
-
(2010)
BMC Genomics
, vol.11
, pp. 181
-
-
D'Auria, G.1
Jimenez-Hernandez, N.2
Peris-Bondia, F.3
Moya, A.4
Latorre, A.5
-
10
-
-
19644365813
-
Simultaneous COD, nitrogen, and phosphate removal by aerobic granular sludge
-
De Kreuk, M.K., Heijnen, J.J., and van Loosdrecht, M.C.M. (2005) Simultaneous COD, nitrogen, and phosphate removal by aerobic granular sludge. Biotechnol Bioeng 90: 761-769.
-
(2005)
Biotechnol Bioeng
, vol.90
, pp. 761-769
-
-
De Kreuk, M.K.1
Heijnen, J.J.2
van Loosdrecht, M.C.M.3
-
11
-
-
0346252346
-
The Bradyrhizobium japonicum napEDABC genes encoding the periplasmic nitrate reductase are essential for nitrate respiration
-
Delgado, M.J., Bonnard, N., Tresierra-Ayala, A., Bedmar, E.J., and Muller, P. (2003) The Bradyrhizobium japonicum napEDABC genes encoding the periplasmic nitrate reductase are essential for nitrate respiration. Microbiology 149: 3395-3403.
-
(2003)
Microbiology
, vol.149
, pp. 3395-3403
-
-
Delgado, M.J.1
Bonnard, N.2
Tresierra-Ayala, A.3
Bedmar, E.J.4
Muller, P.5
-
12
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
Dick, G., Andersson, A., Baker, B., Simmons, S., Thomas, B., Yelton, A.P., and Banfield, J. (2009) Community-wide analysis of microbial genome sequence signatures. Genome Biol 10: R85.
-
(2009)
Genome Biol
, vol.10
-
-
Dick, G.1
Andersson, A.2
Baker, B.3
Simmons, S.4
Thomas, B.5
Yelton, A.P.6
Banfield, J.7
-
13
-
-
77949412186
-
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium
-
Eppinger, M., Worsham, P.L., Nikolich, M.P., Riley, D.R., Sebastian, Y., Mou, S., etal. (2010) Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. J Bacteriol 192: 1685-1699.
-
(2010)
J Bacteriol
, vol.192
, pp. 1685-1699
-
-
Eppinger, M.1
Worsham, P.L.2
Nikolich, M.P.3
Riley, D.R.4
Sebastian, Y.5
Mou, S.6
-
14
-
-
77953632232
-
Denitrification capabilities of two biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades
-
Flowers, J.J., He, S., Yilmaz, S., Noguera, D.R., and McMahon, K. (2009) Denitrification capabilities of two biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades. Environ Microbiol Rep 1: 583-588.
-
(2009)
Environ Microbiol Rep
, vol.1
, pp. 583-588
-
-
Flowers, J.J.1
He, S.2
Yilmaz, S.3
Noguera, D.R.4
McMahon, K.5
-
15
-
-
84888199944
-
Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal
-
Flowers, J.J., He, S., Malfatti, S., del Rio, T.G., Tringe, S.G., Hugenholtz, P., and McMahon, K.D. (2013) Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal. ISME J. 7: 2301-2314.
-
(2013)
ISME J.
, vol.7
, pp. 2301-2314
-
-
Flowers, J.J.1
He, S.2
Malfatti, S.3
del Rio, T.G.4
Tringe, S.G.5
Hugenholtz, P.6
McMahon, K.D.7
-
16
-
-
33749858537
-
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
-
Garcia Martin, H., Ivanova, N., Kunin, V., Warnecke, F., Barry, K.W., McHardy, A.C., etal. (2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 24: 1263-1269.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1263-1269
-
-
Garcia Martin, H.1
Ivanova, N.2
Kunin, V.3
Warnecke, F.4
Barry, K.W.5
McHardy, A.C.6
-
17
-
-
83055177093
-
Dynamics of microbial community structure of and enhanced biological phosphorus removal by aerobic granules cultivated on propionate or acetate
-
Gonzalez-Gil, G., and Holliger, C. (2011) Dynamics of microbial community structure of and enhanced biological phosphorus removal by aerobic granules cultivated on propionate or acetate. Appl Environ Microbiol 77: 8041-8051.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 8041-8051
-
-
Gonzalez-Gil, G.1
Holliger, C.2
-
18
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
19
-
-
34648816575
-
Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes
-
He, S., Gall, D.L., and McMahon, K.D. (2007) 'Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes. Appl Environ Microbiol 73: 5865-5874.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5865-5874
-
-
He, S.1
Gall, D.L.2
McMahon, K.D.3
-
20
-
-
77953124142
-
Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge
-
He, S., Kunin, V., Haynes, M., Martin, H.G., Ivanova, N., Rohwer, F., etal. (2010) Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environ Microbiol 12: 1205-1217.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1205-1217
-
-
He, S.1
Kunin, V.2
Haynes, M.3
Martin, H.G.4
Ivanova, N.5
Rohwer, F.6
-
21
-
-
0032822623
-
Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge
-
Hesselmann, R.P., Werlen, C., Hahn, D., van der Meer, J.R., and Zehnder, A.J. (1999) Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Syst Appl Microbiol 22: 454-465.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 454-465
-
-
Hesselmann, R.P.1
Werlen, C.2
Hahn, D.3
van der Meer, J.R.4
Zehnder, A.J.5
-
22
-
-
0034308361
-
Anaerobic metabolism of bacteria performing enhanced biological phosphate removal
-
Hesselmann, R.P.X., Von Rummell, R., Resnick, S.M., Hany, R., and Zehnder, A.J.B. (2000) Anaerobic metabolism of bacteria performing enhanced biological phosphate removal. Water Res 34: 3487-3494.
-
(2000)
Water Res
, vol.34
, pp. 3487-3494
-
-
Hesselmann, R.P.X.1
Von Rummell, R.2
Resnick, S.M.3
Hany, R.4
Zehnder, A.J.B.5
-
23
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt, D., Chen, G.L., Locascio, P.F., Land, M.L., Larimer, F.W., and Hauser, L.J. (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11: 119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
24
-
-
84907682734
-
GroopM: an automated tool for the recovery of population genomes from related metagenomes
-
Imelfort, M., Parks, D., Woodcroft, B.J., Dennis, P., Hugenholtz, P., and Tyson, G.W. (2014) GroopM: an automated tool for the recovery of population genomes from related metagenomes. PeerJ PrePrints. doi:10.7287/peerj.preprints.409v1.
-
(2014)
PeerJ PrePrints
-
-
Imelfort, M.1
Parks, D.2
Woodcroft, B.J.3
Dennis, P.4
Hugenholtz, P.5
Tyson, G.W.6
-
25
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh, K., and Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298.
-
(2008)
Brief Bioinform
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
26
-
-
0019929146
-
Nitrate reductase from Rhodopseudomonas sphaeroides
-
Kerber, N.L., and Cardenas, J. (1982) Nitrate reductase from Rhodopseudomonas sphaeroides. J Bacteriol 150: 1091-1097.
-
(1982)
J Bacteriol
, vol.150
, pp. 1091-1097
-
-
Kerber, N.L.1
Cardenas, J.2
-
27
-
-
84874816824
-
Characterization of the denitrification-associated phosphorus uptake properties of 'Candidatus Accumulibacter phosphatis' clades in sludge subjected to enhanced biological phosphorus removal
-
Kim, J.M., Lee, H.J., Lee, D.S., and Jeon, C.O. (2013) Characterization of the denitrification-associated phosphorus uptake properties of 'Candidatus Accumulibacter phosphatis' clades in sludge subjected to enhanced biological phosphorus removal. Appl Environ Microbiol 79: 1969-1979.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 1969-1979
-
-
Kim, J.M.1
Lee, H.J.2
Lee, D.S.3
Jeon, C.O.4
-
28
-
-
4644327755
-
Microautoradiographic study of rhodocyclus-related polyphosphate-accumulating bacteria in full-scale enhanced biological phosphorus removal plants
-
Kong, Y., Nielsen, J.L., and Nielsen, P.H. (2004) Microautoradiographic study of rhodocyclus-related polyphosphate-accumulating bacteria in full-scale enhanced biological phosphorus removal plants. Appl Environ Microbiol 70: 5383-5390.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5383-5390
-
-
Kong, Y.1
Nielsen, J.L.2
Nielsen, P.H.3
-
29
-
-
22144485591
-
Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants
-
Kong, Y., Nielsen, J.L., and Nielsen, P.H. (2005) Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Appl Environ Microbiol 71: 4076-4085.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4076-4085
-
-
Kong, Y.1
Nielsen, J.L.2
Nielsen, P.H.3
-
30
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis, K.T., and Tiedje, J.M. (2005a) Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 102: 2567-2572.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
31
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
Konstantinidis, K.T., and Tiedje, J.M. (2005b) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187: 6258-6264.
-
(2005)
J Bacteriol
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
32
-
-
0034146531
-
Recent developments in the biochemistry and ecology of enhanced biological phosphorus removal
-
Kortstee, G.J.J., Appeldoorn, K.J., Bonting, C.F.C., van Niel, E.W.J., and van Veen, H.W. (2000) Recent developments in the biochemistry and ecology of enhanced biological phosphorus removal. 65: 332-340.
-
(2000)
, vol.65
, pp. 332-340
-
-
Kortstee, G.J.J.1
Appeldoorn, K.J.2
Bonting, C.F.C.3
van Niel, E.W.J.4
van Veen, H.W.5
-
33
-
-
84876476015
-
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal
-
Kristiansen, R., Nguyen, H.T.T., Saunders, A.M., Nielsen, J.L., Wimmer, R., Le, V.Q., etal. (2013) A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal. ISME J 7: 543-554.
-
(2013)
ISME J
, vol.7
, pp. 543-554
-
-
Kristiansen, R.1
Nguyen, H.T.T.2
Saunders, A.M.3
Nielsen, J.L.4
Wimmer, R.5
Le, V.Q.6
-
34
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K., Hallin, P., Rødland, E.A., Stærfeldt, H.-H., Rognes, T., and Ussery, D.W. (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35: 3100-3108.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Stærfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
-
35
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
Laslett, D., and Canback, B. (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 32: 11-16.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
36
-
-
79955142868
-
Proteinortho: detection of (Co-) orthologs in large-scale analysis
-
Lechner, M., Findeiß, S., Steiner, L., Marz, M., Stadler, P., and Prohaska, S. (2011) Proteinortho: detection of (Co-) orthologs in large-scale analysis. BMC Bioinformatics 12: 124.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 124
-
-
Lechner, M.1
Findeiß, S.2
Steiner, L.3
Marz, M.4
Stadler, P.5
Prohaska, S.6
-
37
-
-
85028209629
-
-
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
-
Li, H. (2013) Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. URL http://arxiv.org/abs/1303.3997v2.
-
(2013)
-
-
Li, H.1
-
38
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li, W., and Godzik, A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
39
-
-
0034174513
-
Use of metabolic inhibitors and gas chromatography/mass spectrometry to study poly-b-hydroxyalkanoates metabolism involving cryptic nutrients in enhanced biological phosphorus removal systems
-
Louie, T.M., Mah, T.J., Oldham, W.K., and Ramey, W.D. (2000) Use of metabolic inhibitors and gas chromatography/mass spectrometry to study poly-b-hydroxyalkanoates metabolism involving cryptic nutrients in enhanced biological phosphorus removal systems. Water Res 34: 1507-1514.
-
(2000)
Water Res
, vol.34
, pp. 1507-1514
-
-
Louie, T.M.1
Mah, T.J.2
Oldham, W.K.3
Ramey, W.D.4
-
40
-
-
33751229013
-
Obtaining highly enriched cultures of Candidatus Accumulibacter phosphates through alternating carbon sources
-
Lu, H., Oehmen, A., Virdis, B., Keller, J., and Yuan, Z. (2006) Obtaining highly enriched cultures of Candidatus Accumulibacter phosphates through alternating carbon sources. Water Res 40: 3838-3848.
-
(2006)
Water Res
, vol.40
, pp. 3838-3848
-
-
Lu, H.1
Oehmen, A.2
Virdis, B.3
Keller, J.4
Yuan, Z.5
-
41
-
-
35348896612
-
Polyphosphate kinase genes from full-scale activated sludge plants
-
McMahon, K., Yilmaz, S., He, S., Gall, D., Jenkins, D., and Keasling, J. (2007) Polyphosphate kinase genes from full-scale activated sludge plants. Appl Microbiol Biotechnol 77: 167-173.
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 167-173
-
-
McMahon, K.1
Yilmaz, S.2
He, S.3
Gall, D.4
Jenkins, D.5
Keasling, J.6
-
42
-
-
0031107039
-
Intracellular carbon flow in phosphorus accumulating organisms from activated sludge systems
-
Maurer, M., Gujer, W., Hany, R., and Bachmann, S. (1997) Intracellular carbon flow in phosphorus accumulating organisms from activated sludge systems. Water Res 31: 907-917.
-
(1997)
Water Res
, vol.31
, pp. 907-917
-
-
Maurer, M.1
Gujer, W.2
Hany, R.3
Bachmann, S.4
-
43
-
-
0002563012
-
Effect of phosphorus accumulation on acetate metabolism in the biological phosphorus removal process
-
In, Ramadori, R. (ed). Oxford, UK: Pergamon Press
-
Mino, T., Arun, V., Tsuzuki, Y., and Matsuo, T. (1987) Effect of phosphorus accumulation on acetate metabolism in the biological phosphorus removal process. In Biological Phosphorus Removal from Wastewaters: Advances in Water Pollution Control, Ramadori, R. (ed). Oxford, UK: Pergamon Press, pp. 27-38.
-
(1987)
Biological Phosphorus Removal from Wastewaters: Advances in Water Pollution Control
, pp. 27-38
-
-
Mino, T.1
Arun, V.2
Tsuzuki, Y.3
Matsuo, T.4
-
44
-
-
0032704710
-
Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases
-
Moreno-Vivián, C., Cabello, P., Martínez-Luque, M., Blasco, R., and Castillo, F. (1999) Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J Bacteriol 181: 6573-6584.
-
(1999)
J Bacteriol
, vol.181
, pp. 6573-6584
-
-
Moreno-Vivián, C.1
Cabello, P.2
Martínez-Luque, M.3
Blasco, R.4
Castillo, F.5
-
45
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A.C., and Kanehisa, M. (2007) KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 35: W182-W185.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W182-W185
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
46
-
-
84867198039
-
Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants
-
Nguyen, H.T.T., Nielsen, J.L., and Nielsen, P.H. (2012) 'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants. Environ Microbiol 14: 2826-2837.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2826-2837
-
-
Nguyen, H.T.T.1
Nielsen, J.L.2
Nielsen, P.H.3
-
47
-
-
34247612370
-
Advances in enhanced biological phosphorus removal: from micro to macro scale
-
Oehmen, A., Lemos, P.C., Carvalho, G., Yuan, Z., Keller, J., Blackall, L.L., and Reis, M.A.M. (2007) Advances in enhanced biological phosphorus removal: from micro to macro scale. Water Res 41: 2271-2300.
-
(2007)
Water Res
, vol.41
, pp. 2271-2300
-
-
Oehmen, A.1
Lemos, P.C.2
Carvalho, G.3
Yuan, Z.4
Keller, J.5
Blackall, L.L.6
Reis, M.A.M.7
-
48
-
-
77953170231
-
Assessing the abundance and activity of denitrifying polyphosphate accumulating organisms through molecular and chemical techniques
-
Oehmen, A., Carvalho, G., Freitas, F., and Reis, M.A.M. (2010) Assessing the abundance and activity of denitrifying polyphosphate accumulating organisms through molecular and chemical techniques. Water Sci Technol 61: 2061-2068.
-
(2010)
Water Sci Technol
, vol.61
, pp. 2061-2068
-
-
Oehmen, A.1
Carvalho, G.2
Freitas, F.3
Reis, M.A.M.4
-
49
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen, T.N., Brunak, S., von Heijne, G., and Nielsen, H. (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
50
-
-
51649112363
-
Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
-
Peterson, S.B., Warnecke, F., Madejska, J., McMahon, K.D., and Hugenholtz, P. (2008) Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal. Environ Microbiol 10: 2692-2703.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2692-2703
-
-
Peterson, S.B.1
Warnecke, F.2
Madejska, J.3
McMahon, K.D.4
Hugenholtz, P.5
-
51
-
-
84861203603
-
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
-
Powell, S., Szklarczyk, D., Trachana, K., Roth, A., Kuhn, M., Muller, J., etal. (2012) eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res 40: D284-D289.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D284-D289
-
-
Powell, S.1
Szklarczyk, D.2
Trachana, K.3
Roth, A.4
Kuhn, M.5
Muller, J.6
-
52
-
-
0033080667
-
Development and validation of a flux-based stoichiometric model for enhanced biological phosphorus removal metabolism
-
Pramanik, J., Trelstad, P.L., Schuler, A.J., Jenkins, D., and Keasling, J.D. (1999) Development and validation of a flux-based stoichiometric model for enhanced biological phosphorus removal metabolism. Water Res 33: 462-476.
-
(1999)
Water Res
, vol.33
, pp. 462-476
-
-
Pramanik, J.1
Trelstad, P.L.2
Schuler, A.J.3
Jenkins, D.4
Keasling, J.D.5
-
53
-
-
53849104729
-
The pangenome structure of Escherichia coli: comparative genomic analysis of E.coli commensal and pathogenic isolates
-
Rasko, D.A., Rosovitz, M.J., Myers, G.S.A., Mongodin, E.F., Fricke, W.F., Gajer, P., etal. (2008) The pangenome structure of Escherichia coli: comparative genomic analysis of E.coli commensal and pathogenic isolates. J Bacteriol 190: 6881-6893.
-
(2008)
J Bacteriol
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.A.3
Mongodin, E.F.4
Fricke, W.F.5
Gajer, P.6
-
54
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M., and Rosselló-Móra, R. (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
55
-
-
77957316683
-
Monitoring associations between clade-level variation, overall community structure and ecosystem function in enhanced biological phosphorus removal (EBPR) systems using terminal-restriction fragment length polymorphism (T-RFLP)
-
Slater, F.R., Johnson, C.R., Blackall, L.L., Beiko, R.G., and Bond, P.L. (2010) Monitoring associations between clade-level variation, overall community structure and ecosystem function in enhanced biological phosphorus removal (EBPR) systems using terminal-restriction fragment length polymorphism (T-RFLP). Water Res 44: 4908-4923.
-
(2010)
Water Res
, vol.44
, pp. 4908-4923
-
-
Slater, F.R.1
Johnson, C.R.2
Blackall, L.L.3
Beiko, R.G.4
Bond, P.L.5
-
56
-
-
0036182372
-
Periplasmic nitrate reductase (NapABC Enzyme) supports anaerobic respiration by Escherichia coli K-12
-
Stewart, V., Lu, Y., and Darwin, A.J. (2002) Periplasmic nitrate reductase (NapABC Enzyme) supports anaerobic respiration by Escherichia coli K-12. J Bacteriol 184: 1314-1323.
-
(2002)
J Bacteriol
, vol.184
, pp. 1314-1323
-
-
Stewart, V.1
Lu, Y.2
Darwin, A.J.3
-
57
-
-
84879572604
-
Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome
-
Tomida, S., Nguyen, L., Chiu, B.-H., Liu, J., Sodergren, E., Weinstock, G.M., and Li, H. (2013) Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome. MBio 4: e00003-13. doi:10.1128/mBio.00003-13.
-
(2013)
MBio
, vol.4
-
-
Tomida, S.1
Nguyen, L.2
Chiu, B.-H.3
Liu, J.4
Sodergren, E.5
Weinstock, G.M.6
Li, H.7
-
58
-
-
0022788310
-
Metabolic behaviour of Acinetobacter spp. in enhanced biological phosphorus removal - a biochemical model
-
Wentzel, M.C., Lotter, L.H., Loewenthal, R.E., and Marais, G.V.R. (1986) Metabolic behaviour of Acinetobacter spp. in enhanced biological phosphorus removal - a biochemical model. South African Water Research Commission.
-
(1986)
South African Water Research Commission
-
-
Wentzel, M.C.1
Lotter, L.H.2
Loewenthal, R.E.3
Marais, G.V.R.4
-
59
-
-
71249148094
-
Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal
-
Wexler, M., Richardson, D.J., and Bond, P.L. (2009) Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal. Environ Microbiol 11: 3029-3044.
-
(2009)
Environ Microbiol
, vol.11
, pp. 3029-3044
-
-
Wexler, M.1
Richardson, D.J.2
Bond, P.L.3
-
60
-
-
44249115619
-
Metaproteomics provides functional insight into activated sludge wastewater treatment
-
Wilmes, P., Wexler, M., and Bond, P.L. (2008) Metaproteomics provides functional insight into activated sludge wastewater treatment. PLoS ONE 3: e1778.
-
(2008)
PLoS ONE
, vol.3
-
-
Wilmes, P.1
Wexler, M.2
Bond, P.L.3
-
61
-
-
84885819796
-
Systematic identification of gene families for use as 'markers' for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
-
Wu, D., Jospin, G., and Eisen, J.A. (2013) Systematic identification of gene families for use as 'markers' for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups. PLoS ONE 8: e77033.
-
(2013)
PLoS ONE
, vol.8
-
-
Wu, D.1
Jospin, G.2
Eisen, J.A.3
-
62
-
-
34548709607
-
Multi-scale individual-based model of microbial and bioconversion dynamics in aerobic granular sludge
-
Xavier, J.B., de Kreuk, M.K., Picioreanu, C., and van Loosdrecht, M.C.M. (2007) Multi-scale individual-based model of microbial and bioconversion dynamics in aerobic granular sludge. Environ Sci Technol 41: 6410-6417.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 6410-6417
-
-
Xavier, J.B.1
De Kreuk, M.K.2
Picioreanu, C.3
Van Loosdrecht, M.C.M.4
-
63
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R., and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
64
-
-
61549132009
-
Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs)
-
Zhou, Y., Pijuan, M., Zeng, R.J., and Yuan, Z. (2009) Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs). Water Res 43: 1330-1340.
-
(2009)
Water Res
, vol.43
, pp. 1330-1340
-
-
Zhou, Y.1
Pijuan, M.2
Zeng, R.J.3
Yuan, Z.4
|