High-level hemicellulosic arabinose predominately affects lignocellulose crystallinity for genetically enhancing both plant lodging resistance and biomass enzymatic digestibility in rice mutants

Plant Biotechnology Journal

Volumn 13, Issue 4, 2015, Pages 514-525

  Li, Fengcheng ^a   Zhang, Mingliang ^a   Guo, Kai ^a   Hu, Zhen ^a   Zhang, Ran ^a   Feng, Yongqing ^a   Yi, Xiaoyan ^a   Zou, Weihua ^a   Wang, Lingqiang ^a   Wu, Changyin ^a   Tian, Jinshan ^b   Lu, Tiegang ^c   Xie, Guosheng ^a   Peng, Liangcai ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b Yichang Academy of Agricultural Sciences   (China)

^c INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Biomass digestibility; Cell wall; Genetic modification; GH9B and XAT; Lodging resistance; Rice

Indexed keywords

ARA;

ARABINOSE; ENZYME; HEMICELLULOSE; LIGNIN; LIGNOCELLULOSE; POLYSACCHARIDE;

BIOMASS; CELL WALL; ENZYMOLOGY; GENETICS; METABOLISM; MUTATION; ORYZA; PLANT GENE;

ARABINOSE; BIOMASS; CELL WALL; ENZYMES; GENES, PLANT; LIGNIN; MUTATION; ORYZA; POLYSACCHARIDES;

EID: 84928198102     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12276     Document Type: Article

References (48)

1. Abramson, M., Shoseyov, O. and Shani, Z. (2010) Plant cell wall reconstruction toward improved lignocellulosic production and processability. Plant Sci. 178, 61-72.
2. Anders, N., Wilkinson, M.D., Lovegrove, A., Freeman, J., Tryfona, T., Pellny, T.K., Weimar, T., Mortimer, J.C., Stott, K., Baker, J.M., Defoin-Platel, M., Shewry, P.R., Dupree, P. and Mitchell, R.A. (2012) Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc. Natl Acad. Sci. USA, 109, 989-993.
3. Arioli, T., Peng, L., Betzner, A.S., Burn, J., Wittke, W., Herth, W., Camilleri, C., Hofte, H., Plazinski, J., Birch, R., Cork, A., Glover, J., Redmond, J. and Williamson, R.E. (1998) Molecular analysis of cellulose biosynthesis in Arabidopsis. Science, 279, 717-720.
4. Atias, O., Chor, B. and Chamovitz, D.A. (2009) Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network. BMC Syst. Biol. 3, 86.
5. Bansal, P., Hall, M., Realff, M.J., Lee, J.H. and Bommarius, A.S. (2010) Multivariate statistical analysis of X-ray data from cellulose: a new method to determine degree of crystallinity and predict hydrolysis rates. Bioresour. Technol. 101, 4461-4471.
6. Berry, P.M., Sterling, M., Spink, J.H., Baker, C.J., Sylvester-Bradley, R., Mooney, S.J., Tams, A.R. and Ennos, A.R. (2004) Understanding and reducing lodging in cereals. Adv. Agron. 84, 217-271.
7. Casler, M.D., Buxton, D.R. and Vogel, K.P. (2002) Genetic modification of lignin concentration affects fitness of perennial herbaceous plants. Theor. Appl. Genet. 104, 127-131.
8. Chen, F. and Dixon, R.A. (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat. Biotechnol. 25, 759-761.
9. Chiniquy, D., Varanasi, P., Oh, T., Harholt, J., Katnelson, J., Singh, S., Auer, M., Simmons, B., Adams, P.D., Scheller, H.V. and Ronald, P.C. (2013) Three novel rice genes closely related to the Arabidopsis IRX9, IRX9L, and IRX14 genes and their roles in xylan biosynthesis. Front. Plant Sci. 4, 1-13.
10. Crook, M.J. and Ennos, A.R. (1994) Stem and root characteristics associated with lodging resistance in four winter wheat cultivars. J. Agric. Sci. 123, 167-174.
11. Dische, Z. (1962) Color reactions of carbohydrates. In Methods in Carbohydrate Chemistry, Vol. 1(Whistler, R.L. and Wolfrom, M.L., eds), pp. 477-512. New York: Academic Press.
12. Domínguez-Escribá, L. and Porcar, M. (2009) Rice straw management: the big waste. Biofuels, Bioprod. Bioref. 4, 154-159.
13. Farrokhi, N., Burton, R.A., Brownfield, L., Hrmova, M., Wilson, S.M., Bacic, A. and Fincher, G.B. (2006) Plant cell wall biosynthesis: genetic, biochemical and functional genomics approaches to the identification of key genes. Plant Biotechnol. J. 4, 145-167.
14. Grabber, J.H. (2005) How do lignin composition, structure, and cross-linking affect degradability? A review of cell wall model studies. Crop Sci. 45, 820-831.
15. Guo, K., Zou, W., Feng, Y., Zhang, M., Zhang, J., Tu, F., Xie, G., Wang, L., Wang, Y., Klie, S., Persson, S. and Peng, L. (2014) An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics. 15, 596.
16. Halpin, C., Holt, K., Chojecki, J., Oliver, D., Chabbert, B., Monties, B., Edwards, K., Barakate, A. and Foxon, G.A. (1998) Brown-midrib maize (bm1)-a mutation affecting the cinnamyl alcohol dehydrogenase gene. Plant J. 14, 545-553.
17. Huang, J., Xia, T., Li, A., Yu, B., Li, Q., Tu, Y., Zhang, W., Yi, Z. and Peng, L. (2012) A rapid and consistent near infrared spectroscopic assay for biomass enzymatic digestibility upon various physical and chemical pretreatments in Miscanthus. Bioresour. Technol. 121, 274-281.
18. Jung, H.G., Smith, R.R. and Endres, C.S. (1994) Cell wall composition and degradability of stem tissue from lucerne divergently selected for lignin and in vitro dry-matter disappearance. Grass Forage Sci. 49, 295-304.
19. Jung, J.H., Fouad, W.M., Vermerris, W., Gallo, M. and Altpeter, F. (2012) RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass. Plant Biotechnol. J. 10, 1067-1076.
20. Li, X., Weng, J.K. and Chapple, C. (2008) Improvement of biomass through lignin modification. Plant J. 54, 569-581.
21. 4 pretreatments in Miscanthus. Bioresour. Technol. 130, 629-637.
22. Li, M., Feng, S., Wu, L., Li, Y., Fan, C., Zhang, R., Zou, W., Tu, Y., Jing, H., Li, S. and Peng, L. (2014a) Sugar-rich sweet sorghum is distinctively affected by wall polymer features for biomass digestibility and ethanol fermentation in bagasse. Bioresour. Technol. 167, 14-23.
23. Li, Z., Zhao, C., Zha, Y., Wan, C., Si, S., Liu, F., Zhang, R., Li, F., Y, B., Yi, Z., Xu, N., Peng, L. and Li, Q. (2014b) The minor wall-networks between monolignols and interlinked-phenolics predominantly affect biomass enzymatic digestibility in Miscanthus. PLoS ONE, 9, e105115.
24. Liu, L., Shang-Guan, K., Zhang, B., Liu, X., Yan, M., Zhang, L., Shi, Y., Zhang, M., Qian, Q., Li, J. and Zhou, Y. (2013) Brittle Culm1, a COBRA-Like protein, functions in cellulose assembly through binding cellulose microfibrils. PLoS Genet. 9, e1003704.
25. Ma, Q.H. (2009) The expression of caffeic acid 3-O-methyltransferase in two wheat genotypes differing in lodging resistance. J. Exp. Bot. 60, 2763-2771.
26. Park, S., Baker, J.O., Himmel, M.E., Parilla, P.A. and Johnson, D.K. (2010) Cellulose crystallinity index: measurement techniques and their impact on interpreting cellulase performance. Biotechnol. Biofuels, 3, 10.
27. Pauly, M. and Keegstra, K. (2010) Plant cell wall polymers as precursors for biofuels. Curr. Opin. Plant Biol. 13, 305-312.
28. Pear, J.R., Kawagoe, Y., Schreckengost, W.E., Delmer, D.P. and Stalker, D.M. (1996) Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. Proc. Natl Acad. Sci. USA, 93, 12637-12642.
29. Peng, L., Hocart, C.H., Redmond, J.W. and Williamson, R.E. (2000) Fractionation of carbohydrates in Arabidopsis root cell walls shows that three radial swelling loci are specifically involved in cellulose production. Planta, 211, 406-414.
30. Penning, B.W., Sykes, R.W., Babcock, N.C., Dugard, C.K., Held, M.A., Klimek, J.F., Shreve, J.T., Fowler, M., Ziebell, A., Davis, M.F., Decker, S.R., Turner, G.B., Mosier, N.S., Springer, N.M., Thimmapuram, J., Weil, C.F., McCann, M.C. and Carpita, N.C. (2014) Genetic determinants for enzymatic digestion of lignocellulosic biomass are independent of those for lignin abundance in a maize recombinant inbred population. Plant Physiol. 165, 1475-1487.
31. Raes, J., Rohde, A., Christensen, J.H., Van de Peer, Y. and Boerjan, W. (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol. 133, 1051-1071.
32. Ralph, J., Lundquist, K., Brunow, G., Lu, F., Kim, H., Schatz, P.F., Marita, J.M., Hatfield, R.D., Ralph, S.A., Christensen, J.H. and Boerjan, W. (2004) Lignins: natural polymers from oxidative coupling of 4-hydroxyphenyl-propanoids. Phytochem. Rev. 3, 29-60.
33. Scheller, H.V. and Ulvskov, P. (2010) Hemicelluloses. Annu. Rev. Plant Biol. 61, 263-289.
34. Service, R.F. (2007) Biofuel researchers prepare to reap a new harvest. Science, 315, 1488-1491.
35. Sills, D.L. and Gossett, J.M. (2012) Using FTIR spectroscopy to model alkaline pretreatment and enzymatic saccharification of six lignocellulosic biomasses. Biotechnol. Bioeng. 109, 894-903.
36. Sirajul Islam, M., Peng, S., Visperas, R.M., Ereful, N., Sultan Uddin Bhuiya, M. and Julfiquar, A.W. (2007) Lodging-related morphological traits of hybrid rice in a tropical irrigated ecosystem. Field Crop Res. 101, 240-248.
37. Somerville, C. (2006) Cellulose synthesis in higher plants. Annu. Rev. Cell Dev. Biol. 22, 53-78.
38. Sun, H., Li, Y., Feng, S., Zou, W., Guo, K., Fan, C., Si, S. and Peng, L. (2013) Analysis of five rice 4-coumarate: coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice. Biochem. Biophys. Res. Commun. 430, 1151-1156.
39. Tanaka, K., Murata, K., Yamazaki, M., Onosato, K., Miyao, A. and Hirochika, H. (2003) Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 133, 73-83.
40. Wang, L., Guo, K., Li, Y., Tu, Y., Hu, Z., Wang, B., Cui, X. and Peng, L. (2010) Expression profiling and integrative analysis of the CESA/CSL superfamily in rice. BMC Plant Biol. 10, 282.
41. Wu, C., Li, X., Yuan, W., Chen, G., Kilian, A., Li, J., Xu, C., Zhou, D.X., Wang, S. and Zhang, Q. (2003) Development of enhancer trap lines for functional analysis of the rice genome. Plant J. 35, 378-427.
42. Wu, Z., Zhang, M., Wang, L., Tu, Y., Zhang, J., Xie, G., Zou, W., Li, F., Guo, K., Li, Q., Gao, C. and Peng, L. (2013) Biomass digestibility is predominantly affected by three factors of wall polymer features distinctive in wheat accessions and rice mutants. Biotechnol. Biofuels, 6, 183.
43. Xie, G. and Peng, L. (2011) Genetic engineering of energy crops: a strategy for biofuel production in China. J. Integr. Plant Biol. 53, 143-150.
44. Xie, G., Yang, B., Xu, Z., Li, F., Guo, K., Zhang, M., Wang, L., Zou, W., Wang, Y. and Peng, L. (2013) Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice. PLoS ONE, 8, e50171.
45. Xu, Z., Zhang, D., Hu, J., Zhou, X., Ye, X., Reichel, K.L., Stewart, N.R., Syrenne, R.D., Yang, X., Gao, P., Shi, W., Doeppke, C., Sykes, R.W., Burris, J.N., Bozell, J.J., Cheng, M.Z., Hayes, D.G., Labbe, N., Davis, M., Stewart, C.N. and Yuan, J.S. (2009) Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom. BMC Bioinformatics, 10, S3.
46. 4 pretreatments in Miscanthus. Biotechnol. Biofuels, 5, 58.
47. Zhang, B. and Zhou, Y. (2011) Rice brittleness mutants: a way to open the 'black box' of monocot cell wall biosynthesis. J. Integr. Plant Biol. 53, 136-142.
48. 4 pretreatments in Miscanthus. Bioresour. Technol. 130, 30-37.