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Volumn 14, Issue 1, 2015, Pages

Metabolic and genetic factors affecting the productivity of pyrimidine nucleoside in Bacillus subtilis

Author keywords

Bacillus subtilis; Cytidine; Gene deletion; Gene expression; Pyrimidine nucleotide biosynthesis; Uridine

Indexed keywords

CYTIDINE; CYTIDINE TRIPHOSPHATE SYNTHASE; MESSENGER RNA; PYRIMIDINE NUCLEOSIDE; PYRIMIDINE NUCLEOSIDE PHOSPHORYLASE; URACIL; URIDINE; BACTERIAL PROTEIN; CYTIDINE DEAMINASE; GLYCOSYLTRANSFERASE; HOMOSERINE DEHYDROGENASE; PYRR PROTEIN, BACTERIA; REPRESSOR PROTEIN;

EID: 84928014943     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-015-0237-1     Document Type: Article
Times cited : (36)

References (36)
  • 1
    • 0032489441 scopus 로고    scopus 로고
    • Purification and characterization of bacillus subtilis PyrR, a bifunctional pyr mRNA-binding attenuation protein/uracil phosphoribosyl transferase
    • Turner RJ, Bonner ER, Grabner GK. Purification and characterization of bacillus subtilis PyrR, a bifunctional pyr mRNA-binding attenuation protein/uracil phosphoribosyl transferase. J Biol Chem. 1998;273(10):5932-8.
    • (1998) J Biol Chem , vol.273 , Issue.10 , pp. 5932-5938
    • Turner, R.J.1    Bonner, E.R.2    Grabner, G.K.3
  • 2
    • 0025813273 scopus 로고
    • Functional organization and nucleotide sequence of the Bacillus subtilis pyrimidine biosynthetic operon
    • Quinn CL, Stephenson BT, Switer RL. Functional organization and nucleotide sequence of the Bacillus subtilis pyrimidine biosynthetic operon. J Biol Chem. 1991;266:9113-27.
    • (1991) J Biol Chem , vol.266 , pp. 9113-9127
    • Quinn, C.L.1    Stephenson, B.T.2    Switer, R.L.3
  • 3
    • 0028243808 scopus 로고
    • Regulation of the Bacillus subtilis pyrimidine biosynthetic (pyr) gene cluster by an atogenous transcriptional attenuation mechanism
    • Turner RJ, Lu Y, Switzer RL. Regulation of the Bacillus subtilis pyrimidine biosynthetic (pyr) gene cluster by an atogenous transcriptional attenuation mechanism. J Bacterol. 1994;76(12):3708-22.
    • (1994) J Bacterol , vol.76 , Issue.12 , pp. 3708-3722
    • Turner, R.J.1    Lu, Y.2    Switzer, R.L.3
  • 4
    • 33947417261 scopus 로고    scopus 로고
    • The regulator protein PyrR of Bacillus subtilis specifically interacts in vivo with three untranslated regions within pyr mRNA of pyrimidine biosynthesis
    • Hobl B, Mack M. The regulator protein PyrR of Bacillus subtilis specifically interacts in vivo with three untranslated regions within pyr mRNA of pyrimidine biosynthesis. Microbiology. 2007;153(3):693-700.
    • (2007) Microbiology , vol.153 , Issue.3 , pp. 693-700
    • Hobl, B.1    Mack, M.2
  • 5
    • 0023754148 scopus 로고
    • Cloning and nucleotide sequence of the Bacillus subtilis hom gene coding for homoserine dehydrogense. Structural and evolutionary relationships with Escherichia coli aspartokinases-homoserine dehydrogenases I and II
    • Parsot C, Cohen GN. Cloning and nucleotide sequence of the Bacillus subtilis hom gene coding for homoserine dehydrogense. Structural and evolutionary relationships with Escherichia coli aspartokinases-homoserine dehydrogenases I and II. J Biol Chem. 1988;263:14654-60.
    • (1988) J Biol Chem , vol.263 , pp. 14654-14660
    • Parsot, C.1    Cohen, G.N.2
  • 6
    • 0028842936 scopus 로고
    • Tricistronic operon expression of the genes gcaD (tms), which encodes N-acetylglucosamine 1-phosphate uridyltransferase, prs, which encodes phosphoribosyl diphosphate synthetase, and ctc in vegetative cells of Bacillus subtilis
    • Hilden I, Krath BN, Hove-jensen B. Tricistronic operon expression of the genes gcaD (tms), which encodes N-acetylglucosamine 1-phosphate uridyltransferase, prs, which encodes phosphoribosyl diphosphate synthetase, and ctc in vegetative cells of Bacillus subtilis. J Bacteriol. 1995;177(24):7280-4.
    • (1995) J Bacteriol , vol.177 , Issue.24 , pp. 7280-7284
    • Hilden, I.1    Krath, B.N.2    Hove-jensen, B.3
  • 7
    • 34147164666 scopus 로고    scopus 로고
    • Effect of amplification of desensitized purF and prs on inosine accumulation in Escherichia coli
    • Shimaoka M, Takenaka Y, Kurahashi O, Kawasaki H, Matsui H. Effect of amplification of desensitized purF and prs on inosine accumulation in Escherichia coli. J Biosci Bioeng. 2007;103(3):255-61.
    • (2007) J Biosci Bioeng , vol.103 , Issue.3 , pp. 255-261
    • Shimaoka, M.1    Takenaka, Y.2    Kurahashi, O.3    Kawasaki, H.4    Matsui, H.5
  • 8
    • 84857920641 scopus 로고    scopus 로고
    • Wild-type and feedback-resistant phosphoribosyl pyrophosphate synthetases from Bacillus amyloliquefaciens: purification, characterization, and application to increase purine nucleoside production
    • Zakataeva NP, Romanenkov DV, Skripnikova VS, Vitushkina MV, Livshits VA, Kivero AD, et al. Wild-type and feedback-resistant phosphoribosyl pyrophosphate synthetases from Bacillus amyloliquefaciens: purification, characterization, and application to increase purine nucleoside production. Appl Microbiol Biotechnol. 2012;93:2023-33.
    • (2012) Appl Microbiol Biotechnol , vol.93 , pp. 2023-2033
    • Zakataeva, N.P.1    Romanenkov, D.V.2    Skripnikova, V.S.3    Vitushkina, M.V.4    Livshits, V.A.5    Kivero, A.D.6
  • 10
    • 0028953772 scopus 로고
    • Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP
    • Serina L, Blondin C, Krin E, Sismeiro O, Danchin A, Sakamoto H, et al. Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP. J Biol Chem. 1995;34:5066-74.
    • (1995) J Biol Chem , vol.34 , pp. 5066-5074
    • Serina, L.1    Blondin, C.2    Krin, E.3    Sismeiro, O.4    Danchin, A.5    Sakamoto, H.6
  • 11
    • 3342979412 scopus 로고    scopus 로고
    • Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription
    • Meng Q, Turnbough CL, Switzer RL. Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription. Proc Natl Acad Sci. 2004;101:10943-8.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 10943-10948
    • Meng, Q.1    Turnbough, C.L.2    Switzer, R.L.3
  • 12
    • 33846953211 scopus 로고    scopus 로고
    • Regulation of pyrG expression in Bacillus subtilis: CTP-regulated antitermination and reiterative transcription with pyrG templates in vitro
    • Meng Q, Turnbough CL, Switzer RL. Regulation of pyrG expression in Bacillus subtilis: CTP-regulated antitermination and reiterative transcription with pyrG templates in vitro. Mol Microbiol. 2007;63(5):1440-52.
    • (2007) Mol Microbiol , vol.63 , Issue.5 , pp. 1440-1452
    • Meng, Q.1    Turnbough, C.L.2    Switzer, R.L.3
  • 13
    • 33947370501 scopus 로고    scopus 로고
    • The number of G residues in the Bacillus subtilis pyrG initially transcribed region governs reiterative transcription-mediated regulation
    • Elsholz AKW, Jogenson CM, Switzer RL. The number of G residues in the Bacillus subtilis pyrG initially transcribed region governs reiterative transcription-mediated regulation. J Bacteriol. 2007;189(5):2176-80.
    • (2007) J Bacteriol , vol.189 , Issue.5 , pp. 2176-2180
    • Elsholz, A.K.W.1    Jogenson, C.M.2    Switzer, R.L.3
  • 14
    • 0024652299 scopus 로고
    • Chromosomal location, cloning and nucleotide sequence of the Bacillus subtilis cdd gene encoding cytidine/deoxycytidine deaminase
    • Song B-H, Jan N. Chromosomal location, cloning and nucleotide sequence of the Bacillus subtilis cdd gene encoding cytidine/deoxycytidine deaminase. Mol Gen Genet. 1989;216:462-8.
    • (1989) Mol Gen Genet , vol.216 , pp. 462-468
    • Song, B.-H.1    Jan, N.2
  • 15
    • 0030031938 scopus 로고    scopus 로고
    • Dra-nupC-pdp operon of Bacillus subtilis: nucleotide sequence, induction by deoxyribonucleosides, and transcriptional regulation by the deoR-encoded DeoR repressor protein
    • Saxild HH, Andersen LN, Hammer K. Dra-nupC-pdp operon of Bacillus subtilis: nucleotide sequence, induction by deoxyribonucleosides, and transcriptional regulation by the deoR-encoded DeoR repressor protein. J Bacteriol. 1996;178:424-34.
    • (1996) J Bacteriol , vol.178 , pp. 424-434
    • Saxild, H.H.1    Andersen, L.N.2    Hammer, K.3
  • 16
    • 0033032372 scopus 로고    scopus 로고
    • Identication and characterization of a DeoR specic operator sequence essential for induction of the dra-nupC-pdp operon expression in Bacillus subtilis
    • Zeng X, Saxild HH. Identication and characterization of a DeoR specic operator sequence essential for induction of the dra-nupC-pdp operon expression in Bacillus subtilis. J Bacteriol. 1999;181:1719-27.
    • (1999) J Bacteriol , vol.181 , pp. 1719-1727
    • Zeng, X.1    Saxild, H.H.2
  • 17
    • 0034026531 scopus 로고    scopus 로고
    • Purication and characterization of the DeoR repressor of Bacillus subtilis
    • Zeng X, Saxild HH, Switzer RL. Purication and characterization of the DeoR repressor of Bacillus subtilis. J Bacteriol. 2000;182:1916-22.
    • (2000) J Bacteriol , vol.182 , pp. 1916-1922
    • Zeng, X.1    Saxild, H.H.2    Switzer, R.L.3
  • 18
    • 85006086136 scopus 로고
    • Cytidine production by Mutants of Bacillus subtilis
    • Asahi S, Tsunemi Y, Lzawa M, Doi M. Cytidine production by Mutants of Bacillus subtilis. Biosci Biotech Biochem. 1994;58(8):1399-402.
    • (1994) Biosci Biotech Biochem , vol.58 , Issue.8 , pp. 1399-1402
    • Asahi, S.1    Tsunemi, Y.2    Lzawa, M.3    Doi, M.4
  • 19
    • 85007861629 scopus 로고
    • A 3-deazauracil-resistant mutant of Bacillus subtilis with increased production of cytidine
    • Asahi S, Tsunemi Y, Lzawa M, Doi M. A 3-deazauracil-resistant mutant of Bacillus subtilis with increased production of cytidine. Biosci Biotech Biochem. 1994;59(5):915-6.
    • (1994) Biosci Biotech Biochem , vol.59 , Issue.5 , pp. 915-916
    • Asahi, S.1    Tsunemi, Y.2    Lzawa, M.3    Doi, M.4
  • 20
    • 0029201041 scopus 로고
    • Improvement of a cytidine-producing mutant of Bacillus subtilis introducing a mutantion by homologous recombination
    • Asahi S, Tsunemi Y, Doi M. Improvement of a cytidine-producing mutant of Bacillus subtilis introducing a mutantion by homologous recombination. Biosci Biotech Biochem. 1995;59(11):2123-6.
    • (1995) Biosci Biotech Biochem , vol.59 , Issue.11 , pp. 2123-2126
    • Asahi, S.1    Tsunemi, Y.2    Doi, M.3
  • 22
    • 84928235957 scopus 로고    scopus 로고
    • Knockout of the cdd gene in Bacillus subtilis and its influence on cytidine fermentation
    • Su J, Huang J, Xie XX, Xu QY, Chen N. Knockout of the cdd gene in Bacillus subtilis and its influence on cytidine fermentation. Lett Biotechnol. 2010;21(1):39-42.
    • (2010) Lett Biotechnol , vol.21 , Issue.1 , pp. 39-42
    • Su, J.1    Huang, J.2    Xie, X.X.3    Xu, Q.Y.4    Chen, N.5
  • 24
    • 0016815886 scopus 로고
    • Pyrimidine biosynthetic pathway of Bacillus subtilis
    • Potvin BW, Kelleher RJ. Pyrimidine biosynthetic pathway of Bacillus subtilis. J Bacteriol. 1975;123:604-15.
    • (1975) J Bacteriol , vol.123 , pp. 604-615
    • Potvin, B.W.1    Kelleher, R.J.2
  • 26
    • 0015919054 scopus 로고
    • Regulation and mechanism of phosphoribosyl pyrophosphate synthetase. V. Inhibition by end products and regulation by adenine diphosphate
    • Switzer RL, Sogin DC. Regulation and mechanism of phosphoribosyl pyrophosphate synthetase. V. Inhibition by end products and regulation by adenine diphosphate. J Biol Chem. 1973;248:1063-73.
    • (1973) J Biol Chem , vol.248 , pp. 1063-1073
    • Switzer, R.L.1    Sogin, D.C.2
  • 27
    • 0028796567 scopus 로고
    • Two genes encoding uracil phosphoribosyltransferase are present in Bacillus subtilis
    • Martinussen J, Glaser P, Andersen PS, Saxild HH. Two genes encoding uracil phosphoribosyltransferase are present in Bacillus subtilis. J Bacteriol. 1995;177(1):271-4.
    • (1995) J Bacteriol , vol.177 , Issue.1 , pp. 271-274
    • Martinussen, J.1    Glaser, P.2    Andersen, P.S.3    Saxild, H.H.4
  • 30
    • 0037082166 scopus 로고    scopus 로고
    • PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors
    • Kuwayama H, Obara S, Morio T, Katoh M, Urushihara H, Tanaka Y. PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors. Nucleic Acids Res. 2002;30(2):e2.
    • (2002) Nucleic Acids Res , vol.30 , Issue.2 , pp. e2
    • Kuwayama, H.1    Obara, S.2    Morio, T.3    Katoh, M.4    Urushihara, H.5    Tanaka, Y.6
  • 32
    • 0001134202 scopus 로고
    • Requirements for transformation in Bacillus subtilis
    • Anagnostopoulos C, Spizizen J. Requirements for transformation in Bacillus subtilis. J Bacteriol. 1961;81(5):741-6.
    • (1961) J Bacteriol , vol.81 , Issue.5 , pp. 741-746
    • Anagnostopoulos, C.1    Spizizen, J.2
  • 33
    • 53449095004 scopus 로고    scopus 로고
    • Introduction of marker-free deletions in Bacillus subtilis using the AraR repressor and the ara promoter
    • Liu S, Endo K, Ara K, Ozaki K, Naotake O. Introduction of marker-free deletions in Bacillus subtilis using the AraR repressor and the ara promoter. Microbiology. 2008;154(9):2562-70.
    • (2008) Microbiology , vol.154 , Issue.9 , pp. 2562-2570
    • Liu, S.1    Endo, K.2    Ara, K.3    Ozaki, K.4    Naotake, O.5
  • 34
    • 84901459476 scopus 로고    scopus 로고
    • Current development in genetic engineering strategies of Bacillus species
    • Dong HN, Zhang DW. Current development in genetic engineering strategies of Bacillus species. Microb Cell Fact. 2014;13:63.
    • (2014) Microb Cell Fact , vol.13 , pp. 63
    • Dong, H.N.1    Zhang, D.W.2
  • 35
    • 0020266466 scopus 로고
    • Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance
    • Horinouchi S, Weisblum B. Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance. J Bacteriol. 1982;150(2):815-25.
    • (1982) J Bacteriol , vol.150 , Issue.2 , pp. 815-825
    • Horinouchi, S.1    Weisblum, B.2
  • 36
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MV. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001;29(9):e45.
    • (2001) Nucleic Acids Res , vol.29 , Issue.9 , pp. e45
    • Pfaffl, M.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.