Genesis of avian influenza H9N2 in Bangladesh

Emerging Microbes and Infections

Volumn 3, Issue 12, 2014, Pages

  Shanmuganatham, Karthik ^a   Feeroz, Mohammed M ^b   Jones Engel, Lisa ^c   Walker, David ^a   Alam, S M Rabiul ^b   Hasan, M Kamrul ^b   McKenzie, Pamela ^a   Krauss, Scott ^a   Webby, Richard J ^a   Webster, Robert G ^a  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^b JAHANGIRNAGAR UNIVERSITY   (Bangladesh)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Bangladesh epidemiology; H9N2 subtype classification; influenza virus genetics; molecular sequence data; phylogeny; viral sequence analysis

Indexed keywords

MATRIX PROTEIN; NUCLEOPROTEIN; POLYMERASE ACIDIC; POLYMERASE BASIC 1; POLYMERASE BASIC 2; SIALIDASE; UNCLASSIFIED DRUG; VIRUS HEMAGGLUTININ;

ARTICLE; ASIA; BANGLADESH; CHINA; ENDEMIC SPECIES; GENE SEQUENCE; GENETIC REASSORTMENT; GENETIC VARIABILITY; GENOTYPE; INDIA; INFLUENZA VIRUS A H10N8; INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS A H7N9; INFLUENZA VIRUS A H9N2; IRAN; MARKER GENE; MIDDLE EAST; NONHUMAN; PAKISTAN; PANDEMIC; PHYLOGENY; POULTRY; PRIORITY JOURNAL; VIRUS ISOLATION; VIRUS PATHOGENESIS;

AVES; MAMMALIA;

EID: 84927919568     PISSN: None     EISSN: 22221751     Source Type: Journal    
DOI: 10.1038/emi.2014.88     Document Type: Article

References (36)

1. Biswas PK, Christensen JP, Ahmed SS et al. Avian influenza outbreaks in chickens, Bangladesh. Emerg Infect Dis 2008; 14: 1909-1912.
2. Monne I, Yamage M, Dauphin G et al. Reassortant avian influenza A(H5N1) viruses with H9N2-PB1 gene in poultry, Bangladesh. Emerg Infect Dis 2013; 19: 1630-1634.
3. Negovetich NJ, Feeroz MM, Jones-Engel L et al. Live bird markets of Bangladesh: H9N2 viruses and the near absence of highly pathogenic H5N1 influenza. PLoS ONE 2011; 6: e19311.
4. Shanmuganatham K, Feeroz MM, Jones-Engel L et al. Antigenic and molecular characterization of avian influenza A(H9N2) viruses, Bangladesh. Emerg Infect Dis 2013; 19. doi: 10.3201/eid1909.130336.
5. Parvin R, Heenemann K, Halami M, Chowdhury E, Islam MR, Vahlenkamp T. Full-genome analysis of avian influenza virus H9N2 from Bangladesh reveals internal gene reassortments with two distinct highly pathogenic avian influenza viruses. Arch Virol 2014; 159: 1651-1661.
6. Chakraborty A, Arifeen SE, Streafield PK. Outbreak of mild respiratory disease caused by H5N1 and H9N2 infections among young children in Dhaka, Bangladesh. Health Sci Bull 2011; 9: 5-12
7. Chen H, Yuan H, Gao R et al. Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study. Lancet 2014; 383: 714-721.
8. Gao R, Cao B, Hu Y et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med 2013; 368: 1888-1897.
9. Garciá-Sastre A, Schmolke M. Avian influenza A H10N8? A virus on the verge? Lancet 2014; 383: 676-677.
10. Liu D, Shi W, Gao GF. Poultry carrying H9N2 act as incubators for novel human avian influenza viruses. Lancet 2014; 383: 869.
11. Butt AM, Siddique S, Idrees M, Tong Y. Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population. Virol J 2010; 7: 319.
12. Ge FF, Zhou JP, Liu J et al. Genetic evolution of H9 subtype influenza viruses from live poultry markets in Shanghai, China. J Clin Microbiol 2009; 47: 3294-3300.
13. Guan Y, Shortridge KF, Krauss S et al. H9N2 influenza viruses possessing H5N1-like internal genomes continue to circulate in poultry in southeastern China. J Virol 2000; 74: 9372-9380.
14. Guan Y, Shortridge KF, Krauss S, Webster RG. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proc Natl Acad Sci USA 1999; 96: 9363-9367.
15. Xu KM, Li KS, Smith GJ et al. Evolution and molecular epidemiology of H9N2 influenza A viruses from quail in southern China, 2000 to 2005. J Virol 2007; 81: 2635-2645.
16. Fusaro A, Monne I, Salviato A et al. Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications. J Virol 2011; 85: 8413-8421.
17. Shepard SS, Davis CT, Bahl J, Rivailler P, York IA, Donis RO. LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins. PLoS ONE 2014; 9: e86921.
18. Toroghi R, Momayez R. Biological and molecular characterization of Avian influenza virus (H9N2) isolates from Iran. Acta Virol 2006; 50: 163-168.
19. Iqbal M, Yaqub T, Reddy K, McCauley JW. Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing ns genes similar to highly pathogenic H7N3 and H5N1 viruses. PLoS ONE 2009; 4: e5788.
20. Tosh C, Nagarajan S, Behera P et al. Genetic analysis of H9N2 avian influenza viruses isolated from India. Arch Virol 2008; 153: 1433-1439.
21. Wetlands International. What are Flyways? Fredericton: Wetlands International, 2014. Available at http://wpe.wetlands.org/Iwhatfly (Accessed 10 October 2014).
22. Marinova-Petkova A, Feeroz MM, Rabiul Alam SM et al. Multiple introductions of highly pathogenic avian influenza H5N1 viruses into Bangladesh. Emerg Microbes Infect 2014; 3: e11.
23. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999; 41: 95-98.
24. Pavlidis P, Noble WS. Matrix2png: a utility for visualizing matrix data. Bioinformatics 2003; 19: 295-296.
25. Choi YK, Ozaki H, Webby RJ et al. Continuing evolution of H9N2 influenza viruses in Southeastern China. J Virol 2004; 78: 8609-8614.
26. Guo YJ, Krauss S, Senne DA et al. Characterization of the pathogenicity of members of the newly established H9N2 influenza virus lineages in Asia. Virology 2000; 267: 279-288.
27. Li C, Yu K, Tian G et al. Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology 2005; 340: 70-83.
28. Wan H, Sorrell EM, Song H et al. Replication and transmission of H9N2 influenza viruses in ferrets: evaluation of pandemic potential. PLoS ONE 2008; 3: e2923.
29. Xu KM, Smith GJ, Bahl J et al. The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005. J Virol 2007; 81: 10389-10401.
30. Chen GW, Chang SC, Mok CK et al. Genomic signatures of human versus avian influenza A viruses. Emerg Infect Dis 2006; 12: 1353-1360.
31. Shaw M, Cooper L, Xu X et al. Molecular changes associated with the transmission of avian influenza a H5N1 and H9N2 viruses to humans. J Med Virol 2002; 66: 107-114.
32. Mase M, Imada T, Sanada Y et al. Imported parakeets harbor H9N2 influenza A viruses that are genetically closely related to those transmitted to humans in Hong Kong. J Virol 2001; 75: 3490-3494.
33. Nicita A. Avian influenza and the poultry trade. Washington, DC: The World Bank eLibrary, 2008. Available at http://dx.doi.org/10.1596/1813-9450-4551 (accessed 27 October 2014).
34. Alam J KI. Seroprevalence of poultry diseases in native chickens in Bangladesh. In: Proceedings of the 9th Annual Scientific Conference of the Bangladesh Society for Veterinary Education and Research; 6-7 January 2003; Mymensingh, Bangladesh. Bangladesh Society for Veterinary Education and Research: Mymensingh, Bangladesh, 2003, Abstract 11.
35. US Defense Threat Reduction Agency. Anticipating the species jump: surveillance for emerging viral threats. Ft Belvoir VA: DTRA, 2010. Available at http://www.hsdl.org/?view&did=716028 (accessed 27 October 2014).
36. Yu X, Jin T, Cui Y et al. Coexistence of influenza H7N9 and H9N2 in poultry linked to human H7N9 infection and their genome characteristics. J Virol 2014; 88: 3423-3431.