Computer-assisted update of a consumer health vocabulary through mining of social network data

Journal of Medical Internet Research

Volumn 13, Issue 2, 2011, Pages

  Doing Harris, Kristina M ^a   Zeng Treitler, Qing ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

Automatic term recognition; Consumer health information; Data mining; Natural language processing; Social networking; Vocabulary

Indexed keywords

ARTICLE; COMPARATIVE STUDY; COMPUTER; CONSUMER HEALTH INFORMATION; DATA MINING; HUMAN; LINGUISTICS; MEDICAL RESEARCH; NATURAL LANGUAGE PROCESSING; SOCIAL SUPPORT;

BIOMEDICAL RESEARCH; COMPUTERS; CONSUMER HEALTH INFORMATION; DATA MINING; HUMANS; NATURAL LANGUAGE PROCESSING; SOCIAL SUPPORT; VOCABULARY; VOCABULARY, CONTROLLED;

EID: 79960028139     PISSN: None     EISSN: 14388871     Source Type: Journal    
DOI: 10.2196/jmir.1636     Document Type: Article

References (28)

1. Zeng QT, Tse T. Exploring and developing consumer health vocabularies. J Am Med Inform Assoc 2006;13(1):24-29. [doi: 10.1197/jamia.M1761] [Medline: 16221948] (Pubitemid 41828332)
2. Christiansen MH, Chater N. Language as shaped by the brain. Behav Brain Sci 2008 Oct;31(5):489-508; discussion 509. [doi: 10.1017/S0140525X08004998] [Medline: 18826669]
3. Atkinson QD, Meade A, Venditti C, Greenhill SJ, Pagel M. Languages evolve in punctuational bursts. Science 2008 Feb 1;319(5863):588 [FREE Full text] [doi: 10.1126/science.1149683] [Medline: 18239118] (Pubitemid 351197055)
4. Hurford JR, Studdert-Kennedy M, Knight C. Approaches to the Evolution of Language: Social and Cognitive Bases. Cambridge, UK: Cambridge University Press; 1998.
5. Simpson J. 2010. Oxford English Dictionary, Quarterly Updates URL: http://www.oed.com/news/updates/revisions0906. html [accessed 2010-08-16] [WebCite Cache ID 5s3Q5DqJ2]
6. The Oxford English Dictionary. The Revision Programme. Oxford, UK: Oxford University Press; 2010. URL: http://www.oed.com/about/revision.html [accessed 2010-08-16] [WebCite Cache ID 5s3QG860q]
7. Cimino JJ. Desiderata for controlled medical vocabularies in the twenty-first century. Methods Inf Med 1998 Nov;37(4-5):394-403. [Medline: 9865037] (Pubitemid 29008630)
8. Bakhshi-Raiez F, Cornet R, de Keizer NF. Development and application of a framework for maintenance of medical terminological systems. J Am Med Inform Assoc 2008;15(5):687-700. [doi: 10.1197/jamia.M2531] [Medline: 18579838]
9. National Cancer Institute. Term Suggestion. Bethesda, MD: US National Institutes of Health URL: http://ncitermform.nci.nih.gov/ncitermform/? dictionary=NCI%20Metathesaurus &code=C0006826 [WebCite Cache ID 5yLWpYPnF]
10. Fact Sheet: SPECIALIST Lexicon. Bethesda, MD: United States National Library of Medicine; 2006. URL: http://www.nlm.nih.gov/pubs/factsheets/umlslex. html [accessed 2010-08-16] [WebCite Cache ID 5s3QLNCby]
11. Suggestion for Medical Subject Headings Change. Bethesda, MD: United States National Library of Medicine; 2008. URL: http://www.nlm.nih.gov/mesh/ meshsugg.html [accessed 2010-08-16] [WebCite Cache ID 5s3QNqGfl]
12. Kageura K, Umino B. Methods of Automatic Term Recognition a Review. Terminology 1996;3(2):259-289 [FREE Full text] [doi: 10.1.1.25.3740]
13. Krauthammer M, Nenadic G. Term identification in the biomedical literature. J Biomed Inform 2004 Dec;37(6):512-526. [doi: 10.1016/j.jbi.2004.08. 004] [Medline: 15542023] (Pubitemid 39487155)
14. Harkema H, Gaizauskas R, Hepple M, Roberts A, Roberts I, Davis N, et al. A Large Scale Terminology Resource for Biomedical Text Processing. In: BioLink. 2004 Presented at: HLT/NCAAL 2004 Workshop; May 6, 2004; Boston, MA. [doi: 10.1.1.153.6414]
15. Aronson AR, Lang FM. An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc 2010 May 1;17(3):229-236. [doi: 10.1136/jamia.2009.002733] [Medline: 20442139]
16. Torii M, Hu Z, Wu CH, Liu H. BioTagger-GM: a gene/protein name recognition system. J Am Med Inform Assoc 2009;16(2):247-255. [doi: 10.1197/jamia.M2844] [Medline: 19074302]
17. Collier N, Nobata C, Tsujii J. Extraction the Names of Genes and Gene Products with a Hidden Markov Model. In: Proceedings of COLING. 2000 Presented at: COLING 2000, 18th International Conference on Computational Linguistics; July 31-Aug 4, 2000; Saarbruecken, Germany. [doi: 10.3115/990820.990850]
18. Frantzi KT, Ananiadou S, Mima H. Automatic term recognition of multi-word terms: the C-value/NC-value method. International Journal on Digital Libraries 2003;3(2):115-130 [FREE Full text] [doi: 10.1.1.128.3352]
19. Zeng QT, Tse T, Divita G, Keselman A, Crowell J, Browne AC, et al. Term identification methods for consumer health vocabulary development. J Med Internet Res 2007;9(1):e4 [FREE Full text] [doi: 10.2196/jmir.9.1.e4] [Medline: 17478413] (Pubitemid 47450404)
20. Spasić I, Schober D, Sansone SA, Rebholz-Schuhmann D, Kell DB, Paton NW. Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. BMC Bioinformatics 2008;9 Suppl 5:S5 [FREE Full text] [doi: 10.1186/1471-2105-9-S5-S5] [Medline: 18460187]
21. Lenhart A, Purcell K, Smith A, Zickuhr K. Social Media and Young Adults. Washington, DC: Pew Internet & American Life Project; 2010 Feb 03. URL: http://www.pewinternet.org/Reports/2010/Social-Media-and-Young-Adults.aspx [accessed 2011-04-25] [WebCite Cache ID 5yDfqtv7C]
22. Frost JH, Massagli MP. Social uses of personal health information within PatientsLikeMe, an online patient community: what can happen when patients have access to one another's data. J Med Internet Res 2008;10(3):e15 [FREE Full text] [doi: 10.2196/jmir.1053] [Medline: 18504244]
23. Wicks P, Massagli M, Frost J, Brownstein C, Okun S, Vaughan T, et al. Sharing health data for better outcomes on PatientsLikeMe. J Med Internet Res 2010;12(2):e19 [FREE Full text] [doi: 10.2196/jmir.1549] [Medline: 20542858]
24. Zeng QT, Goryachev S, Weiss S, Sordo M, Murphy SN, Lazarus R. Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system. BMC Med Inform Decis Mak 2006;6:30 [FREE Full text] [doi: 10.1186/1472-6947-6-30] [Medline: 16872495]
25. englishspeak.com. 2011. 1000 Most Common English Phrases URL: http://www.englishspeak.com/english-phrases.cfm [accessed 2011-04-25] [WebCite Cache ID 5yDg46KsI]
26. Hripcsak G, Rothschild AS. Agreement, the f-measure, and reliability in information retrieval. J Am Med Inform Assoc 2005;12(3):296-298. [doi: 10.1197/jamia.M1733] [Medline: 15684123] (Pubitemid 40602981)
27. Nordstrom B, Ranta A. Advances in Natural Language Processing. In: Nordstrom B, Ranta A, editors. 6th International Conference, GoTAL 2008, Gothenburg, Sweden, August 25-27, 2008, Proceedings (Lecture Notes in ⋯ /Lecture Notes in Artificial Intelligence). Berlin, Germany: Springer; 2008.
28. Keselman A, Smith CA, Divita G, Kim H, Browne AC, Leroy G, et al. Consumer health concepts that do not map to the UMLS: where do they fit? J Am Med Inform Assoc 2008;15(4):496-505. [doi: 10.1197/jamia.M2599] [Medline: 18436906] (Pubitemid 351885154)