The biology of plasmodium vivax explored through genomics

Annals of the New York Academy of Sciences

Volumn 1342, Issue 1, 2015, Pages 53-61

  Luo, Zunping ^a   Sullivan, Steven A ^a   Carlton, Jane M ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

Genomics, Plasmodium vivax, Plasmodium cynomolgi; Malaria

Indexed keywords

DUFFY BINDING PROTEIN;

ARTICLE; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOMICS; MULTIGENE FAMILY; NONHUMAN; PLASMODIUM CYNOMOLGI; PLASMODIUM VIVAX; SYNTENY; ANIMAL; GENETICS; HUMAN; MALARIA, VIVAX; PHYLOGENY; PROCEDURES; TRENDS;

PLASMODIUM CYNOMOLGI; PLASMODIUM PARASITES; PLASMODIUM VIVAX;

ANIMALS; GENOMICS; HUMANS; MALARIA, VIVAX; PHYLOGENY; PLASMODIUM VIVAX;

EID: 84927911187     PISSN: 00778923     EISSN: 17496632     Source Type: Journal    
DOI: 10.1111/nyas.12708     Document Type: Article

References (46)

1. Martinsen, E.S. & S.L. Perkins. 2013. The diversity of Plasmodium and other haemosporidians. In Malaria Parasites: Comparative Genomics, Evolution and Molecular Biology. J.M. Carlton, S.L. Perkins, K.W. Deitsch, Eds.: 1-2. Norfolk, UK: Caister Academic Press.
2. World Health Organization (WHO). 2013. World Malaria Report 2013. WHO, Geneva, Switzerland.
3. Gething, P.W. et al. 2012. A long neglected world malaria map: Plasmodium vivax endemicity in 2010. PLoS Negl. Trop. Dis. 6: e1814.
4. Rahimi, B.A. et al. 2014. Severe vivax malaria: a systematic review and meta-analysis of clinical studies since 1900. Malar. J. 13: 481.
5. Carlton, J.M., A. Das & A.A. Escalante. 2013. Genomics, population genetics and evolutionary history of Plasmodium vivax. Adv. Parasitol. 81: 203-222.
6. Liu, W. et al. 2014. African origin of the malaria parasite Plasmodium vivax. Nat. Commun. 5: 3346.
7. Noulin, F. et al. 2013. 1912-2012: a century of research on Plasmodium vivax in vitro culture. Trends Parasitol. 29: 286-294.
8. Carlton, J.M. et al. 2008. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature 455: 757-763.
9. Pain, A. et al. 2008. The genome of the simian and human malaria parasite Plasmodium knowlesi. Nature 455: 799-803.
10. McCutchan, T.F. et al. 1984. Evolutionary relatedness of Plasmodium species as determined by the structure of DNA. Science 225: 808-811.
11. Carlton, J. 2003. The Plasmodium vivax genome sequencing project. Trends Parasitol. 19: 227-231.
12. Neafsey, D.E. et al. 2012. The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum. Nat. Genet. 44: 1046-1050.
13. Ellis, R.D. et al. 2014. Blood stage vaccines for Plasmodium falciparum. Hum. Vaccin. 6: 627-634.
14. Ta, T.H. et al. 2014. First case of a naturally acquired human infection with Plasmodium cynomolgi. Malar. J. 13: 68.
15. Tachibana, S. et al. 2012. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Nat. Genet. 44: 1051-1055.
16. del Portillo, H.A. et al. 2001. A superfamily of variant genes encoded in the subtelomeric region of Plasmodium vivax. Nature 410: 839-842.
17. Merino, E.F. et al. 2006. Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite. Mol. Biochem. Parasitol. 149: 10-16.
18. Frech, C. & N. Chen. 2013. Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis. BMC Genomics 14: 427.
19. Lopez, F.J. et al. 2013. A new computational approach redefines the subtelomeric vir superfamily of Plasmodium vivax. BMC Genomics 14: 8.
20. Okenu, D.M. et al. 2005. The reticulocyte binding proteins of Plasmodium cynomolgi: a model system for studies of P. vivax. Mol. Biochem. Parasitol. 143: 116-120.
21. Rayner, J.C. et al. 2004. Rapid evolution of an erythrocyte invasion gene family: the Plasmodium reichenowi reticulocyte binding like (RBL) genes. Mol. Biochem. Parasitol. 133: 287-296.
22. Galinski, M.R. et al. 1992. A reticulocyte-binding protein complex of Plasmodium vivax merozoites. Cell 69: 1213-1226.
23. Galinski, M.R. & J.W. Barnwell. 1996. Plasmodium vivax merozoites, invasion of reticulocytes and considerations for malaria vaccine development. Parasitol. Today 12: 20-29.
24. Rayner, J.C. et al. 2005. Dramatic difference in diversity between Plasmodium falciparum and Plasmodium vivax reticulocyte binding-like genes. Am. J. Trop. Med. Hyg. 72: 666-674.
25. Adams, J.H. et al. 1990. The Duffy receptor family of Plasmodium knowelsi is located within the micronemes of invasive malaria merozoites. Cell 63: 141-153.
26. Adams, J.H. et al. 1992. A family of erythrocyte binding proteins of malaria parasites. Proc. Natl. Acad. Sci. U. S. A. 89: 7085-7089.
27. Batchelor, J.D., J.A. Zahm & N.H. Tolia. 2011. Dimerization of Plasmodium vivax DBP is induced upon receptor binding and drives recognition of DARC. Nat. Struct. Mol. Biol. 18: 908-914.
28. Miller, L.H. et al. 1976. The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. N. Engl. J. Med. 295: 302-304.
29. Miller, L.H. et al. 1975. Erythrocyte receptors for (Plasmodium knowlesi) malaria: Duffy blood group determinants. Science 189: 561-563.
30. Culleton, R. et al. 2009. Evidence for the transmission of Plasmodium vivax in the Republic of the Congo, West Central Africa. J. Infect. Dis. 200: 1465-1469.
31. Mendes, C. et al. 2011. Duffy negative antigen is no longer a barrier to Plasmodium vivax-molecular evidences from the African West Coast (Angola and Equatorial Guinea). PLoS Negl. Trop. Dis. 5: e1192.
32. Ryan, J.R. et al. 2006. Evidence for transmission of Plasmodium vivax among a Duffy antigen negative population in western Kenya. Am. J. Trop. Med. Hyg. 75: 575-581.
33. Woldearegai, T.G. et al. 2013. Plasmodium vivax malaria in Duffy-negative individuals from Ethiopia. Trans. R. Soc. Trop. Med. Hyg. 107: 328-331.
34. Wurtz, N. et al. 2011. Vivax malaria in Mauritania includes infection of a Duffy-negative individual. Malar. J. 10: 336-343.
35. Cavasini, C.E. et al. 2007. Duffy blood group gene polymorphisms among malaria vivax patients in four areas of the Brazilian Amazon region. Malar. J. 6: 167.
36. Menard, D. et al. 2010. Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people. Proc. Natl. Acad. Sci. U. S. A. 107: 5967-5971.
37. Menard, D. et al. 2013. Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains. PLoS Negl. Trop. Dis. 7: e2489.
38. Carlton, J.M. et al. 2002. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature 419: 512-519.
39. Rao, M. 2012. Foreword. The international centers of excellence for malaria research. Acta Tropica. 121: 157.
40. Melnikov, A. et al. 2011. Hybrid selection for sequencing pathogen genomes from clinical samples. Genome Biol. 12: R73.
41. Bright, A.T. et al. 2012. Whole genome sequencing analysis of Plasmodium vivax using whole genome capture. BMC Genomics 13: 262.
42. Mideo, N. et al. 2013. Ahead of the curve: next generation estimators of drug resistance in malaria infections. Trends Parasitol. 29: 321-328.
43. Otto, T.D. et al. 2014. Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts. Nat. Commun. 5: 4754.
44. Duval, L. et al. 2010. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proc. Natl. Acad. Sci. U. S. A. 107: 10561-10566.
45. Dharia, N.V. et al. 2010. Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes. Proc. Natl. Acad. Sci. U. S. A. 107: 20045-20050.
46. Chan, E.R. et al. 2012. Whole genome sequencing of field isolates provides robust characterization of genetic diversity in Plasmodium vivax. PLoS Negl. Trop. Dis. 6: e1811.