메뉴 건너뛰기




Volumn 73, Issue 3, 2015, Pages 749-764

F-curve, a graphical representation of protein sequences for similarity analysis based on physicochemical properties of amino acids

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84927622547     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (33)
  • 1
    • 33749518282 scopus 로고    scopus 로고
    • Mathematical descriptors of DNA sequences: Development and applications
    • A. Nandy, M. Harle, S. C. Basak. Mathematical descriptors of DNA sequences: development and applications, Arkivoc 9 (2006) 211-238.
    • (2006) Arkivoc , vol.9 , pp. 211-238
    • Nandy, A.1    Harle, M.2    Basak, S.C.3
  • 3
    • 79959718188 scopus 로고    scopus 로고
    • A novel graphical representation of protein sequences and its application
    • B. Liao, B. Y. Liao, X. G. Lu, Z. Cao, A novel graphical representation of protein sequences and its application, J. Comput. Chem. 32 (2011) 2539-2544.
    • (2011) J. Comput. Chem. , vol.32 , pp. 2539-2544
    • Liao, B.1    Liao, B.Y.2    Lu, X.G.3    Cao, Z.4
  • 5
    • 84856737170 scopus 로고    scopus 로고
    • Very efficient search for protein alignment - VESPA
    • M. Randić, Very efficient search for protein alignment - VESPA, J. Comput. Chem. 33 (2012) 702-707.
    • (2012) J. Comput. Chem. , vol.33 , pp. 702-707
    • Randić, M.1
  • 6
    • 34548645838 scopus 로고    scopus 로고
    • Introduction to protein folding for physicists
    • P. Echenique, Introduction to protein folding for physicists, Contemp. Phys. 48 (2007) 81-108.
    • (2007) Contemp. Phys. , vol.48 , pp. 81-108
    • Echenique, P.1
  • 7
    • 21344441498 scopus 로고    scopus 로고
    • A new 2-D graphical representation of DNA sequences and their numerical characterization
    • J. Song, H. W. Tang, A new 2-D graphical representation of DNA sequences and their numerical characterization, J. Biol. Methods 63 (2005) 228-239.
    • (2005) J. Biol. Methods , vol.63 , pp. 228-239
    • Song, J.1    Tang, H.W.2
  • 8
    • 2442509138 scopus 로고    scopus 로고
    • 2-D graphical representation of proteins based on virtual genetic code
    • M. Randić, 2-D graphical representation of proteins based on virtual genetic code, SAR QSAR Environ. Res. 15 (2004) 147-157.
    • (2004) SAR QSAR Environ. Res. , vol.15 , pp. 147-157
    • Randic, M.1
  • 9
    • 24644463186 scopus 로고    scopus 로고
    • A 2-D graphical representation of protein sequences based on nucleotide triplet codons
    • F. L. Bai, T. M. Wang, A 2-D graphical representation of protein sequences based on nucleotide triplet codons, Chem. Phys. Lett. 413 (2005) 458-462.
    • (2005) Chem. Phys. Lett. , vol.413 , pp. 458-462
    • Bai, F.L.1    Wang, T.M.2
  • 10
    • 84859636830 scopus 로고    scopus 로고
    • A 3D graphical representation of protein sequences based on the Gray code
    • P. A. He, D. Li, Y. P. Zhang, X. Wang, Y. H. Yao, A 3D graphical representation of protein sequences based on the Gray code, J. Theor. Biol. 304 (2012) 81-87.
    • (2012) J. Theor. Biol. , vol.304 , pp. 81-87
    • He, P.A.1    Li, D.2    Zhang, Y.P.3    Wang, X.4    Yao, Y.H.5
  • 11
    • 77956169760 scopus 로고    scopus 로고
    • 3D graphical representation of protein sequences and their statistical characterization
    • M. I. Abo el Maaty, M. M. Abo-Elkhier, M. A. Abd Elwahaab, 3D graphical representation of protein sequences and their statistical characterization, Physica A 389 (2010) 4668-4676.
    • (2010) Physica A , vol.389 , pp. 4668-4676
    • Abo El Maaty, M.I.1    Abo-Elkhier, M.M.2    Elwahaab, M.A.A.3
  • 12
    • 77954213485 scopus 로고    scopus 로고
    • Representation of protein sequences on latitude-like circles and longitude-like semi-circles
    • M. I. Abo el Maaty, M. M. Abo-Elkhier, M. A. Abd Elwahaab, Representation of protein sequences on latitude-like circles and longitude-like semi-circles, Chem. Phys. Lett. 493 (2010) 386-391.
    • (2010) Chem. Phys. Lett. , vol.493 , pp. 386-391
    • Abo El Maaty, M.I.1    Abo-Elkhier, M.M.2    Elwahaab, M.A.A.3
  • 13
    • 84886373947 scopus 로고    scopus 로고
    • Similarity/dissimilarity analysis of protein sequences using the spatial median as a descriptor
    • M. M. Abo-Elkhier, Similarity/dissimilarity analysis of protein sequences using the spatial median as a descriptor, J. Biophys. Chem. 3 (2012) 142-148.
    • (2012) J. Biophys. Chem. , vol.3 , pp. 142-148
    • Abo-Elkhier, M.M.1
  • 14
    • 71849120074 scopus 로고    scopus 로고
    • A 2D graphical representation of protein sequence and its numerical characterization
    • J. Wen, Y. Y. Zhang, A 2D graphical representation of protein sequence and its numerical characterization, Chem. Phys. Lett. 476 (2009) 281-286.
    • (2009) Chem. Phys. Lett. , vol.476 , pp. 281-286
    • Wen, J.1    Zhang, Y.Y.2
  • 15
    • 34248647897 scopus 로고    scopus 로고
    • 2-D graphical representation of proteins based on physic-chemical properties of amino acids
    • M. Randić, 2-D graphical representation of proteins based on physic-chemical properties of amino acids. Chem. Phys. Lett. 440 (2007) 291-295.
    • (2007) Chem. Phys. Lett. , vol.440 , pp. 291-295
    • Randić, M.1
  • 16
    • 77955673069 scopus 로고    scopus 로고
    • 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
    • Z. C. Wu, X. Xiao, K. C. Chou, 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids, J. Theor. Biol. 267 (2010) 29-34.
    • (2010) J. Theor. Biol. , vol.267 , pp. 29-34
    • Wu, Z.C.1    Xiao, X.2    Chou, K.C.3
  • 17
    • 58149316600 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of protein sequences
    • Y. H. Yao, Q. Dai, C. Li, P. A. He, X. Y. Nan, Y. Z. Zhang, Analysis of similarity/dissimilarity of protein sequences, Proteins 73 (2008) 864-871.
    • (2008) Proteins , vol.73 , pp. 864-871
    • Yao, Y.H.1    Dai, Q.2    Li, C.3    He, P.A.4    Nan, X.Y.5    Zhang, Y.Z.6
  • 18
    • 84880332998 scopus 로고    scopus 로고
    • P-H Curve, a graphical representation of protein sequences for similarities analysis
    • Y. X. Liu, D. Li, K. B. Lu, Y. D. Jiao, P. A. He, P-H Curve, a graphical representation of protein sequences for similarities analysis, MATCH Commun. Math. Comput. Chem. 70 (2013) 451-466.
    • (2013) MATCH Commun. Math. Comput. Chem. , vol.70 , pp. 451-466
    • Liu, Y.X.1    Li, D.2    Lu, K.B.3    Jiao, Y.D.4    He, P.A.5
  • 19
    • 84901797189 scopus 로고    scopus 로고
    • DV-Curve representation of protein sequences and its application
    • 1-8
    • W. Deng, Y. H. Luan, DV-Curve representation of protein sequences and its application, Comput. Math. Methods Med. 2014 (2014) #203871 (pp. 1-8).
    • (2014) Comput. Math. Methods Med. , vol.2014 , pp. 203871
    • Deng, W.1    Luan, Y.H.2
  • 20
    • 84862820743 scopus 로고    scopus 로고
    • Application of 2D graphic representation of protein sequence based on Huffman tree method
    • Z. H. Qi, J. Feng, X. Q. Qi, L. Li, Application of 2D graphic representation of protein sequence based on Huffman tree method, Comput. Biol. Med. 42 (2012) 556-563.
    • (2012) Comput. Biol. Med. , vol.42 , pp. 556-563
    • Qi, Z.H.1    Feng, J.2    Qi, X.Q.3    Li, L.4
  • 21
    • 84898729792 scopus 로고    scopus 로고
    • A novel method of 3D graphical representation and similarities analysis for protein sequences
    • Z. Li, C. C. Geng, P. A. He, Y. H. Yao, A novel method of 3D graphical representation and similarities analysis for protein sequences, MATCH Commun. Math. Comput. Chem. 71 (2014) 213-226.
    • (2014) MATCH Commun. Math. Comput. Chem. , vol.71 , pp. 213-226
    • Li, Z.1    Geng, C.C.2    He, P.A.3    Yao, Y.H.4
  • 22
    • 0000625604 scopus 로고    scopus 로고
    • Fractal functions and their applications
    • P. R. Massopust, Fractal functions and their applications, Chaos Solitons Fractals 2 (1997) 171-190.
    • (1997) Chaos Solitons Fractals , vol.2 , pp. 171-190
    • Massopust, P.R.1
  • 23
    • 33845946198 scopus 로고    scopus 로고
    • The application of fractal geometry to the design of grid or reticulated shell structures
    • M. A. Vyzantiadou, A. V. Avdelas, S. Zafiropoulos, The application of fractal geometry to the design of grid or reticulated shell structures, Computer Aided Des. 39 (2007) 51-59.
    • (2007) Computer Aided des , vol.39 , pp. 51-59
    • Vyzantiadou, M.A.1    Avdelas, A.V.2    Zafiropoulos, S.3
  • 24
    • 84927646875 scopus 로고    scopus 로고
    • Modelling discrete sequences with fractal interpolation functions of higher order
    • P. Bouboulis, Modelling discrete sequences with fractal interpolation functions of higher order, J. Math. Sci. 3 (2010) 1-10.
    • (2010) J. Math. Sci. , vol.3 , pp. 1-10
    • Bouboulis, P.1
  • 25
    • 0026897973 scopus 로고
    • Using iterated function systems to model discrete sequences
    • D. S. Mazel, M. H. Hayes, Using iterated function systems to model discrete sequences, IEEE Trans. Signal Process. 40 (1992) 1724-1734.
    • (1992) IEEE Trans. Signal Process , vol.40 , pp. 1724-1734
    • Mazel, D.S.1    Hayes, M.H.2
  • 26
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison - A review
    • S. Vinga, J. Almeida, Alignment-free sequence comparison - A review, Bioinformatics 19 (2003) 513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 27
    • 0035102453 scopus 로고    scopus 로고
    • An information-based sequence distance and its application to whole mitochondrial genome phylogeny
    • M. Li, J. H. Badger, X. Chen, S. Kwong, P. Kearney, H. Zhang, An information-based sequence distance and its application to whole mitochondrial genome phylogeny, Bioinformatics 17 (2001) 149-154.
    • (2001) Bioinformatics , vol.17 , pp. 149-154
    • Li, M.1    Badger, J.H.2    Chen, X.3    Kwong, S.4    Kearney, P.5    Zhang, H.6
  • 28
    • 0242643741 scopus 로고    scopus 로고
    • A new sequence distance measure for phylogenetic tree construction
    • H. H. Otu, K. Sayood, A new sequence distance measure for phylogenetic tree construction, Bioinformatics 19 (2003) 2122-2130.
    • (2003) Bioinformatics , vol.19 , pp. 2122-2130
    • Otu, H.H.1    Sayood, K.2
  • 29
    • 4544263561 scopus 로고    scopus 로고
    • A weighted least-squares approach for inferring phylogenies from incomplete distance matrices
    • V. Makarenkov, F. Lapointe, A weighted least-squares approach for inferring phylogenies from incomplete distance matrices, Bioinformatics 20 (2004) 2113-2121.
    • (2004) Bioinformatics , vol.20 , pp. 2113-2121
    • Makarenkov, V.1    Lapointe, F.2
  • 30
    • 0026927227 scopus 로고
    • An efficient approach to estimate fractal dimension of textural images
    • N. Sarkar, B. B. Chaudhuri, An efficient approach to estimate fractal dimension of textural images, Pattern Recog. 25 (1992) 1035-1041.
    • (1992) Pattern Recog , vol.25 , pp. 1035-1041
    • Sarkar, N.1    Chaudhuri, B.B.2
  • 31
    • 41749118694 scopus 로고    scopus 로고
    • Fractal dimension applied to plant identification
    • O. M. Bruno, R. O. Plotze, M. Falvo, M. Castro, Fractal dimension applied to plant identification, Inf. Sci. 178 (2008) 2722-2733.
    • (2008) Inf. Sci. , vol.178 , pp. 2722-2733
    • Bruno, O.M.1    Plotze, R.O.2    Falvo, M.3    Castro, M.4
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • J. D. Thompson, D. G. Higgins, T. J. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res. 22 (1994) 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 79959611480 scopus 로고    scopus 로고
    • Clustal W-A software for multiple sequence alignment of protein and nucleic acid sequence
    • C. Z. Guo, M. Q. Sun, Clustal W-A software for multiple sequence alignment of protein and nucleic acid sequence, Biotech. Lett. 11 (2000) 146-149.
    • (2000) Biotech. Lett. , vol.11 , pp. 146-149
    • Guo, C.Z.1    Sun, M.Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.