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Volumn 17, Issue 4, 2015, Pages 271-278

Genotype-phenotype correlation and mutation spectrum in a large cohort of patients with inherited retinal dystrophy revealed by next-generation sequencing

Author keywords

exome sequencing; genotype phenotype correlations; novel mutations; retinal dystrophy

Indexed keywords

MICRORNA;

EID: 84926506187     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2014.138     Document Type: Article
Times cited : (172)

References (39)
  • 2
    • 84880161275 scopus 로고    scopus 로고
    • Genes and mutations causing retinitis pigmentosa
    • Daiger SP, Sullivan LS, Bowne SJ. Genes and mutations causing retinitis pigmentosa. Clin Genet 2013;84:132-141.
    • (2013) Clin Genet , vol.84 , pp. 132-141
    • Daiger, S.P.1    Sullivan, L.S.2    Bowne, S.J.3
  • 3
    • 84875932002 scopus 로고    scopus 로고
    • New approaches to molecular diagnosis
    • Korf BR, Rehm HL. New approaches to molecular diagnosis. JAMA 2013;309:1511-1521.
    • (2013) JAMA , vol.309 , pp. 1511-1521
    • Korf, B.R.1    Rehm, H.L.2
  • 4
    • 84862580595 scopus 로고    scopus 로고
    • Exome sequencing can improve diagnosis and alter patient management
    • Dixon-Salazar TJ, Silhavy JL, Udpa N, et al. Exome sequencing can improve diagnosis and alter patient management. Sci Transl Med 2012;4:138ra78.
    • (2012) Sci Transl Med , vol.4 , pp. 138ra78
    • Dixon-Salazar, T.J.1    Silhavy, J.L.2    Udpa, N.3
  • 5
    • 84904617365 scopus 로고    scopus 로고
    • SLC7A14 linked to autosomal recessive retinitis pigmentosa
    • Jin ZB, Huang XF, Lv JN, et al. SLC7A14 linked to autosomal recessive retinitis pigmentosa. Nat Commun 2014;5:3517.
    • (2014) Nat Commun , vol.5 , pp. 3517
    • Jin, Z.B.1    Huang, X.F.2    Lv, J.N.3
  • 6
    • 84873377444 scopus 로고    scopus 로고
    • Autozygome-guided exome sequencing in retinal dystrophy patients reveals pathogenetic mutations and novel candidate disease genes
    • Abu-Safieh L, Alrashed M, Anazi S, et al. Autozygome-guided exome sequencing in retinal dystrophy patients reveals pathogenetic mutations and novel candidate disease genes. Genome Res 2013;23:236-247.
    • (2013) Genome Res , vol.23 , pp. 236-247
    • Abu-Safieh, L.1    Alrashed, M.2    Anazi, S.3
  • 7
    • 84878509059 scopus 로고    scopus 로고
    • Targeted exome sequencing identified novel USH2A mutations in Usher syndrome families
    • Huang XF, Xiang P, Chen J, et al. Targeted exome sequencing identified novel USH2A mutations in Usher syndrome families. PLoS One 2013;8:e63832.
    • (2013) PLoS One , vol.8 , pp. e63832
    • Huang, X.F.1    Xiang, P.2    Chen, J.3
  • 8
    • 84890219186 scopus 로고    scopus 로고
    • Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing
    • Wang X, Wang H, Sun V, et al. Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing. J Med Genet 2013;50:674-688.
    • (2013) J Med Genet , vol.50 , pp. 674-688
    • Wang, X.1    Wang, H.2    Sun, V.3
  • 9
    • 84877638125 scopus 로고    scopus 로고
    • Targeted sequencing of 179 genes associated with hereditary retinal dystrophies and 10 candidate genes identifies novel and known mutations in patients with various retinal diseases
    • Chen X, Zhao K, Sheng X, et al. Targeted sequencing of 179 genes associated with hereditary retinal dystrophies and 10 candidate genes identifies novel and known mutations in patients with various retinal diseases. Invest Ophthalmol Vis Sci 2013;54:2186-2197.
    • (2013) Invest Ophthalmol Vis Sci , vol.54 , pp. 2186-2197
    • Chen, X.1    Zhao, K.2    Sheng, X.3
  • 10
    • 84897554873 scopus 로고    scopus 로고
    • Comprehensive molecular diagnosis of Bardet-Biedl syndrome by high-throughput targeted exome sequencing
    • Xing DJ, Zhang HX, Huang N, et al. Comprehensive molecular diagnosis of Bardet-Biedl syndrome by high-throughput targeted exome sequencing. PLoS One 2014;9:e90599.
    • (2014) PLoS One , vol.9 , pp. e90599
    • Xing, D.J.1    Zhang, H.X.2    Huang, N.3
  • 11
    • 84879684377 scopus 로고    scopus 로고
    • Targeted resequencing in epileptic encephalopathies identifies de novo mutations in CHD2 and SYNGAP1
    • Carvill GL, Heavin SB, Yendle SC, et al. Targeted resequencing in epileptic encephalopathies identifies de novo mutations in CHD2 and SYNGAP1. Nat Genet 2013;45:825-830.
    • (2013) Nat Genet , vol.45 , pp. 825-830
    • Carvill, G.L.1    Heavin, S.B.2    Yendle, S.C.3
  • 12
    • 77958476884 scopus 로고    scopus 로고
    • The retinitis pigmentosa protein RP2 interacts with polycystin 2 and regulates cilia-mediated vertebrate development
    • Hurd T, Zhou W, Jenkins P, et al. The retinitis pigmentosa protein RP2 interacts with polycystin 2 and regulates cilia-mediated vertebrate development. Hum Mol Genet 2010;19:4330-4344.
    • (2010) Hum Mol Genet , vol.19 , pp. 4330-4344
    • Hurd, T.1    Zhou, W.2    Jenkins, P.3
  • 13
    • 0034284501 scopus 로고    scopus 로고
    • Identification of a novel protein interacting with RPGR
    • Boylan JP, Wright AF. Identification of a novel protein interacting with RPGR. Hum Mol Genet 2000;9:2085-2093.
    • (2000) Hum Mol Genet , vol.9 , pp. 2085-2093
    • Boylan, J.P.1    Wright, A.F.2
  • 14
    • 44949139634 scopus 로고    scopus 로고
    • Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina
    • Damiani D, Alexander JJ, O'Rourke JR, et al. Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina. J Neurosci 2008;28:4878-4887.
    • (2008) J Neurosci , vol.28 , pp. 4878-4887
    • Damiani, D.1    Alexander, J.J.2    O'rourke, J.R.3
  • 15
    • 45449085696 scopus 로고    scopus 로고
    • Individual retinal progenitor cells display extensive heterogeneity of gene expression
    • Trimarchi JM, Stadler MB, Cepko CL. Individual retinal progenitor cells display extensive heterogeneity of gene expression. PLoS One 2008;3:e1588.
    • (2008) PLoS One , vol.3 , pp. e1588
    • Trimarchi, J.M.1    Stadler, M.B.2    Cepko, C.L.3
  • 16
    • 0842277802 scopus 로고    scopus 로고
    • An analysis of the gene expression program of mammalian neural progenitor cells
    • Livesey FJ, Young TL, Cepko CL. An analysis of the gene expression program of mammalian neural progenitor cells. Proc Natl Acad Sci USA 2004;101: 1374-1379.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1374-1379
    • Livesey, F.J.1    Young, T.L.2    Cepko, C.L.3
  • 17
    • 77952479722 scopus 로고    scopus 로고
    • Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs
    • Krol J, Busskamp V, Markiewicz I, et al. Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell 2010;141:618-631.
    • (2010) Cell , vol.141 , pp. 618-631
    • Krol, J.1    Busskamp, V.2    Markiewicz, I.3
  • 18
    • 33750404987 scopus 로고    scopus 로고
    • MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity
    • Ryan DG, Oliveira-Fernandes M, Lavker RM. MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity. Mol Vis 2006;12:1175-1184.
    • (2006) Mol Vis , vol.12 , pp. 1175-1184
    • Ryan, D.G.1    Oliveira-Fernandes, M.2    Lavker, R.M.3
  • 19
    • 47149110686 scopus 로고    scopus 로고
    • Identifying pathogenic genetic background of simplex or multiplex retinitis pigmentosa patients: A large scale mutation screening study
    • Jin ZB, Mandai M, Yokota T, et al. Identifying pathogenic genetic background of simplex or multiplex retinitis pigmentosa patients: a large scale mutation screening study. J Med Genet 2008;45:465-472.
    • (2008) J Med Genet , vol.45 , pp. 465-472
    • Jin, Z.B.1    Mandai, M.2    Yokota, T.3
  • 20
    • 0033975061 scopus 로고    scopus 로고
    • Mutation of a nuclear receptor gene, NR2E3, causes enhanced S cone syndrome, a disorder of retinal cell fate
    • Haider NB, Jacobson SG, Cideciyan AV, et al. Mutation of a nuclear receptor gene, NR2E3, causes enhanced S cone syndrome, a disorder of retinal cell fate. Nat Genet 2000;24:127-131.
    • (2000) Nat Genet , vol.24 , pp. 127-131
    • Haider, N.B.1    Jacobson, S.G.2    Cideciyan, A.V.3
  • 21
    • 4544264183 scopus 로고    scopus 로고
    • Mutation analysis of NR2E3 and NRL genes in Enhanced S Cone Syndrome
    • Wright AF, Reddick AC, Schwartz SB, et al. Mutation analysis of NR2E3 and NRL genes in Enhanced S Cone Syndrome. Hum Mutat 2004;24:439.
    • (2004) Hum Mutat , vol.24 , pp. 439
    • Wright, A.F.1    Reddick, A.C.2    Schwartz, S.B.3
  • 22
    • 77957687634 scopus 로고    scopus 로고
    • Mutation spectrum and frequency of the RHO gene in 248 Chinese families with retinitis pigmentosa
    • Li S, Xiao X, Wang P, Guo X, Zhang Q. Mutation spectrum and frequency of the RHO gene in 248 Chinese families with retinitis pigmentosa. Biochem Biophys Res Commun 2010;401:42-47.
    • (2010) Biochem Biophys Res Commun , vol.401 , pp. 42-47
    • Li, S.1    Xiao, X.2    Wang, P.3    Guo, X.4    Zhang, Q.5
  • 23
    • 4444311117 scopus 로고    scopus 로고
    • Abnormal cerebellar development and axonal decussation due to mutations in AHI1 in Joubert syndrome
    • Ferland RJ, Eyaid W, Collura RV, et al. Abnormal cerebellar development and axonal decussation due to mutations in AHI1 in Joubert syndrome. Nat Genet 2004;36:1008-1013.
    • (2004) Nat Genet , vol.36 , pp. 1008-1013
    • Ferland, R.J.1    Eyaid, W.2    Collura, R.V.3
  • 24
    • 38549170648 scopus 로고    scopus 로고
    • DNA analysis of AHI1, NPHP1 and CYCLIN D1 in Joubert syndrome patients from the Netherlands
    • Kroes HY, van Zon PH, Fransen van de Putte D, et al. DNA analysis of AHI1, NPHP1 and CYCLIN D1 in Joubert syndrome patients from the Netherlands. Eur J Med Genet 2008;51:24-34.
    • (2008) Eur J Med Genet , vol.51 , pp. 24-34
    • Kroes, H.Y.1    Van Zon, P.H.2    Fransen Van De Putte, D.3
  • 25
    • 27244451186 scopus 로고    scopus 로고
    • Genotyping microarray (disease chip) for Leber congenital amaurosis: Detection of modifier alleles
    • Zernant J, Külm M, Dharmaraj S, et al. Genotyping microarray (disease chip) for Leber congenital amaurosis: detection of modifier alleles. Invest Ophthalmol Vis Sci 2005;46:3052-3059.
    • (2005) Invest Ophthalmol Vis Sci , vol.46 , pp. 3052-3059
    • Zernant, J.1    Külm, M.2    Dharmaraj, S.3
  • 26
    • 79951809636 scopus 로고    scopus 로고
    • Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa
    • Simpson DA, Clark GR, Alexander S, Silvestri G, Willoughby CE. Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa. J Med Genet 2011;48: 145-151.
    • (2011) J Med Genet , vol.48 , pp. 145-151
    • Simpson, D.A.1    Clark, G.R.2    Alexander, S.3    Silvestri, G.4    Willoughby, C.E.5
  • 27
    • 84865170123 scopus 로고    scopus 로고
    • Next-generation genetic testing for retinitis pigmentosa
    • Neveling K, Collin RW, Gilissen C, et al. Next-generation genetic testing for retinitis pigmentosa. Hum Mutat 2012;33:963-972.
    • (2012) Hum Mutat , vol.33 , pp. 963-972
    • Neveling, K.1    Collin, R.W.2    Gilissen, C.3
  • 28
    • 84905962072 scopus 로고    scopus 로고
    • Identity-by-descent-guided mutation analysis and exome sequencing in consanguineous families reveals unusual clinical and molecular findings in retinal dystrophy
    • Coppieters F, Van Schil K, Bauwens M, et al. Identity-by-descent-guided mutation analysis and exome sequencing in consanguineous families reveals unusual clinical and molecular findings in retinal dystrophy. Genet Med 2014;16:671-680.
    • (2014) Genet Med , vol.16 , pp. 671-680
    • Coppieters, F.1    Van Schil, K.2    Bauwens, M.3
  • 29
    • 0028813530 scopus 로고
    • Epidemiology of retinitis pigmentosa in the Valencian community (Spain)
    • Nájera C, Millán JM, Beneyto M, Prieto F. Epidemiology of retinitis pigmentosa in the Valencian community (Spain). Genet Epidemiol 1995;12:37-46.
    • (1995) Genet Epidemiol , vol.12 , pp. 37-46
    • Nájera, C.1    Millán, J.M.2    Beneyto, M.3    Prieto, F.4
  • 30
    • 84859984473 scopus 로고    scopus 로고
    • High prevalence of mutations in the EYS gene in Japanese patients with autosomal recessive retinitis pigmentosa
    • Iwanami M, Oshikawa M, Nishida T, Nakadomari S, Kato S. High prevalence of mutations in the EYS gene in Japanese patients with autosomal recessive retinitis pigmentosa. Invest Ophthalmol Vis Sci 2012;53:1033-1040.
    • (2012) Invest Ophthalmol Vis Sci , vol.53 , pp. 1033-1040
    • Iwanami, M.1    Oshikawa, M.2    Nishida, T.3    Nakadomari, S.4    Kato, S.5
  • 31
    • 78650778270 scopus 로고    scopus 로고
    • Mutation analysis of 272 Spanish families affected by autosomal recessive retinitis pigmentosa using a genotyping microarray
    • Ávila-Fernández A, Cantalapiedra D, Aller E, et al. Mutation analysis of 272 Spanish families affected by autosomal recessive retinitis pigmentosa using a genotyping microarray. Mol Vis 2010;16:2550-2558.
    • (2010) Mol Vis , vol.16 , pp. 2550-2558
    • Ávila-Fernández, A.1    Cantalapiedra, D.2    Aller, E.3
  • 32
    • 78049241409 scopus 로고    scopus 로고
    • Development of a diagnostic genetic test for simplex and autosomal recessive retinitis pigmentosa
    • Clark GR, Crowe P, Muszynska D, et al. Development of a diagnostic genetic test for simplex and autosomal recessive retinitis pigmentosa. Ophthalmology 2010;117:2169-77.e3.
    • (2010) Ophthalmology , vol.117 , pp. 2169-77e3
    • Clark, G.R.1    Crowe, P.2    Muszynska, D.3
  • 33
    • 44249120315 scopus 로고    scopus 로고
    • Effect of gene therapy on visual function in Leber's congenital amaurosis
    • Bainbridge JW, Smith AJ, Barker SS, et al. Effect of gene therapy on visual function in Leber's congenital amaurosis. N Engl J Med 2008;358: 2231-2239.
    • (2008) N Engl J Med , vol.358 , pp. 2231-2239
    • Bainbridge, J.W.1    Smith, A.J.2    Barker, S.S.3
  • 34
    • 0030669568 scopus 로고    scopus 로고
    • Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor
    • Freund CL, Gregory-Evans CY, Furukawa T, et al. Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor. Cell 1997;91:543-553.
    • (1997) Cell , vol.91 , pp. 543-553
    • Freund, C.L.1    Gregory-Evans, C.Y.2    Furukawa, T.3
  • 35
    • 0030665053 scopus 로고    scopus 로고
    • Human bZIP transcription factor gene NRL: Structure, genomic sequence, and fine linkage mapping at 14q11.2 and negative mutation analysis in patients with retinal degeneration
    • Farjo Q, Jackson A, Pieke-Dahl S, et al. Human bZIP transcription factor gene NRL: structure, genomic sequence, and fine linkage mapping at 14q11.2 and negative mutation analysis in patients with retinal degeneration. Genomics 1997;45:395-401.
    • (1997) Genomics , vol.45 , pp. 395-401
    • Farjo, Q.1    Jackson, A.2    Pieke-Dahl, S.3
  • 36
    • 84894052955 scopus 로고    scopus 로고
    • Exome sequencing and functional analyses suggest that SIX6 is a gene involved in an altered proliferation-differentiation balance early in life and optic nerve degeneration at old age
    • Iglesias AI, Springelkamp H, van der Linde H, et al. Exome sequencing and functional analyses suggest that SIX6 is a gene involved in an altered proliferation-differentiation balance early in life and optic nerve degeneration at old age. Hum Mol Genet 2014;23:1320-1332.
    • (2014) Hum Mol Genet , vol.23 , pp. 1320-1332
    • Iglesias, A.I.1    Springelkamp, H.2    Van Der Linde, H.3
  • 37
    • 84881544806 scopus 로고    scopus 로고
    • Joubert syndrome: Congenital cerebellar ataxia with the molar tooth
    • Romani M, Micalizzi A, Valente EM. Joubert syndrome: congenital cerebellar ataxia with the molar tooth. Lancet Neurol 2013;12:894-905.
    • (2013) Lancet Neurol , vol.12 , pp. 894-905
    • Romani, M.1    Micalizzi, A.2    Valente, E.M.3
  • 38
    • 33748664605 scopus 로고    scopus 로고
    • Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis
    • den Hollander AI, Koenekoop RK, Yzer S, et al. Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis. Am J Hum Genet 2006;79:556-561.
    • (2006) Am J Hum Genet , vol.79 , pp. 556-561
    • Den Hollander, A.I.1    Koenekoop, R.K.2    Yzer, S.3
  • 39
    • 84894431411 scopus 로고    scopus 로고
    • Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: Identification of a novel genotype-phenotype correlation and clinical refinements
    • Wang F, Wang H, Tuan HF, et al. Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements. Hum Genet 2014;133:331-345.
    • (2014) Hum Genet , vol.133 , pp. 331-345
    • Wang, F.1    Wang, H.2    Tuan, H.F.3


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