메뉴 건너뛰기




Volumn 17, Issue 4, 2015, Pages 262-270

Comprehensive analysis of patients with Stargardt macular dystrophy reveals new genotype-phenotype correlations and unexpected diagnostic revisions

Author keywords

clinical genetics; copy number variations; diagnosis; macular degeneration; vision research

Indexed keywords

ABCA4 GENE; ADULT; ALLELE; ARTICLE; CANADIAN; CAPTURE SEQUENCING; CLINICAL EVALUATION; COHORT ANALYSIS; CONTROLLED STUDY; COPY NUMBER VARIATION; CULTURAL ANTHROPOLOGY; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST ACCURACY STUDY; FEMALE; GENE DELETION; GENE FREQUENCY; GENE IDENTIFICATION; GENE MUTATION; GENETIC SCREENING; GENOTYPE PHENOTYPE CORRELATION; HUMAN; INTRON; MAJOR CLINICAL STUDY; MALE; MIDDLE AGED; MOLECULAR DIAGNOSIS; NEXT GENERATION SEQUENCING; RECESSIVE GENE; STARGARDT DISEASE; DNA MUTATIONAL ANALYSIS; GENETIC ASSOCIATION STUDY; GENETICS; HIGH THROUGHPUT SEQUENCING; MACULAR DEGENERATION; PATHOLOGY;

EID: 84926470142     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2014.174     Document Type: Article
Times cited : (44)

References (40)
  • 1
    • 80051709984 scopus 로고    scopus 로고
    • Allelic and phenotypic heterogeneity in ABCA4 mutations
    • Burke TR, Tsang SH. Allelic and phenotypic heterogeneity in ABCA4 mutations. Ophthalmic Genet 2011;32:165-174.
    • (2011) Ophthalmic Genet , vol.32 , pp. 165-174
    • Burke, T.R.1    Tsang, S.H.2
  • 2
    • 77956395561 scopus 로고    scopus 로고
    • Defective lipid transport and biosynthesis in recessive and dominant Stargardt macular degeneration
    • Molday RS, Zhang K. Defective lipid transport and biosynthesis in recessive and dominant Stargardt macular degeneration. Prog Lipid Res 2010;49:476-492.
    • (2010) Prog Lipid Res , vol.49 , pp. 476-492
    • Molday, R.S.1    Zhang, K.2
  • 3
    • 0027372405 scopus 로고
    • A gene for Stargardt's disease (fundus flavimaculatus) maps to the short arm of chromosome 1
    • Kaplan J, Gerber S, Larget-Piet D, et al. A gene for Stargardt's disease (fundus flavimaculatus) maps to the short arm of chromosome 1. Nat Genet 1993;5:308-311.
    • (1993) Nat Genet , vol.5 , pp. 308-311
    • Kaplan, J.1    Gerber, S.2    Larget-Piet, D.3
  • 4
    • 48749110402 scopus 로고    scopus 로고
    • Mutant prominin 1 found in patients with macular degeneration disrupts photoreceptor disk morphogenesis in mice
    • Yang Z, Chen Y, Lillo C, et al. Mutant prominin 1 found in patients with macular degeneration disrupts photoreceptor disk morphogenesis in mice. J Clin Invest 2008;118:2908-2916.
    • (2008) J Clin Invest , vol.118 , pp. 2908-2916
    • Yang, Z.1    Chen, Y.2    Lillo, C.3
  • 5
    • 0035168415 scopus 로고    scopus 로고
    • A 5-bp deletion in ELOVL4 is associated with two related forms of autosomal dominant macular dystrophy
    • Zhang K, Kniazeva M, Han M, et al. A 5-bp deletion in ELOVL4 is associated with two related forms of autosomal dominant macular dystrophy. Nat Genet 2001;27:89-93.
    • (2001) Nat Genet , vol.27 , pp. 89-93
    • Zhang, K.1    Kniazeva, M.2    Han, M.3
  • 6
    • 84891850015 scopus 로고    scopus 로고
    • Association between genotype and phenotype in families with mutations in the ABCA4 gene
    • Kjellström U. Association between genotype and phenotype in families with mutations in the ABCA4 gene. Mol Vis 2014;20:89-104.
    • (2014) Mol Vis , vol.20 , pp. 89-104
    • Kjellström, U.1
  • 7
    • 85007302654 scopus 로고    scopus 로고
    • AAV2 gene therapy readministration in three adults with congenital blindness
    • Bennett J, Ashtari M, Wellman J, et al. AAV2 gene therapy readministration in three adults with congenital blindness. Sci Transl Med 2012;4:120ra15.
    • (2012) Sci Transl Med , vol.4 , pp. 120ra15
    • Bennett, J.1    Ashtari, M.2    Wellman, J.3
  • 8
    • 84873705425 scopus 로고    scopus 로고
    • Dawn of ocular gene therapy: Implications for molecular diagnosis in retinal disease
    • Zaneveld J, Wang F, Wang X, Chen R. Dawn of ocular gene therapy: implications for molecular diagnosis in retinal disease. Sci China Life Sci 2013;56:125-133.
    • (2013) Sci China Life Sci , vol.56 , pp. 125-133
    • Zaneveld, J.1    Wang, F.2    Wang, X.3    Chen, R.4
  • 10
    • 84885466470 scopus 로고    scopus 로고
    • ABCA4 gene screening by nextgeneration sequencing in a British cohort
    • Fujinami K, Zernant J, Chana RK, et al. ABCA4 gene screening by nextgeneration sequencing in a British cohort. Invest Ophthalmol Vis Sci 2013;54: 6662-6674.
    • (2013) Invest Ophthalmol Vis Sci , vol.54 , pp. 6662-6674
    • Fujinami, K.1    Zernant, J.2    Chana, R.K.3
  • 11
    • 84865686525 scopus 로고    scopus 로고
    • Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration
    • Finding of Rare Disease Genes (FORGE) Canada Consortium
    • Koenekoop RK, Wang H, Majewski J, et al.; Finding of Rare Disease Genes (FORGE) Canada Consortium. Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration. Nat Genet 2012;44:1035-1039.
    • (2012) Nat Genet , vol.44 , pp. 1035-1039
    • Koenekoop, R.K.1    Wang, H.2    Majewski, J.3
  • 12
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 13
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010;20:1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 14
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • 1000 Genome Project Data Processing Subgroup
    • Li H, Handsaker B, Wysoker A, et al.; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009;25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 15
    • 75649095276 scopus 로고    scopus 로고
    • A SNP discovery method to assess variant allele probability from next-generation resequencing data
    • Shen Y, Wan Z, Coarfa C, et al. A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res 2010;20:273-280.
    • (2010) Genome Res , vol.20 , pp. 273-280
    • Shen, Y.1    Wan, Z.2    Coarfa, C.3
  • 16
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • Abecasis GR, Auton A, Brooks LD, et al. An integrated map of genetic variation from 1,092 human genomes. Nature 2012;491:56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1    Auton, A.2    Brooks, L.D.3
  • 17
    • 84893756641 scopus 로고    scopus 로고
    • Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks
    • NHLBI GO Exome Sequencing Project
    • Peloso GM, Auer PL, Bis JC, et al.; NHLBI GO Exome Sequencing Project. Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks. Am J Hum Genet 2014;94:223-232.
    • (2014) Am J Hum Genet , vol.94 , pp. 223-232
    • Peloso, G.M.1    Auer, P.L.2    Bis, J.C.3
  • 18
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010;38:e164.
    • (2010) Nucleic Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 19
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 2009;4:1073-1081.
    • (2009) Nat Protoc , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 20
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L, et al. A method and server for predicting damaging missense mutations. Nat Methods 2010;7:248-249.
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3
  • 21
    • 79960763462 scopus 로고    scopus 로고
    • DbNSFP: A lightweight database of human nonsynonymous SNPs and their functional predictions
    • Liu X, Jian X, Boerwinkle E. dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions. Hum Mutat 2011;32:894-899.
    • (2011) Hum Mutat , vol.32 , pp. 894-899
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 22
    • 0037903275 scopus 로고    scopus 로고
    • Human Gene Mutation Database (HGMD): 2003 update
    • Stenson PD, Ball EV, Mort M, et al. Human Gene Mutation Database (HGMD): 2003 update. Hum Mutat 2003;21:577-581.
    • (2003) Hum Mutat , vol.21 , pp. 577-581
    • Stenson, P.D.1    Ball, E.V.2    Mort, M.3
  • 23
    • 84888803513 scopus 로고    scopus 로고
    • Non-exomic and synonymous variants in ABCA4 are an important cause of Stargardt disease
    • Braun TA, Mullins RF, Wagner AH, et al. Non-exomic and synonymous variants in ABCA4 are an important cause of Stargardt disease. Hum Mol Genet 2013;22:5136-5145.
    • (2013) Hum Mol Genet , vol.22 , pp. 5136-5145
    • Braun, T.A.1    Mullins, R.F.2    Wagner, A.H.3
  • 24
    • 84880181531 scopus 로고    scopus 로고
    • Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes
    • Farkas MH, Grant GR, White JA, Sousa ME, Consugar MB, Pierce EA. Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes. BMC Genomics 2013;14:486.
    • (2013) BMC Genomics , vol.14 , pp. 486
    • Farkas, M.H.1    Grant, G.R.2    White, J.A.3    Sousa, M.E.4    Consugar, M.B.5    Pierce, E.A.6
  • 25
    • 80052830541 scopus 로고    scopus 로고
    • Comparison of solution-based exome capture methods for next generation sequencing
    • Sulonen AM, Ellonen P, Almusa H, et al. Comparison of solution-based exome capture methods for next generation sequencing. Genome Biol 2011;12:R94.
    • (2011) Genome Biol , vol.12 , pp. R94
    • Sulonen, A.M.1    Ellonen, P.2    Almusa, H.3
  • 26
    • 84864498831 scopus 로고    scopus 로고
    • Molecular diagnosis of putative Stargardt disease probands by exome sequencing
    • Strom SP, Gao YQ, Martinez A, et al. Molecular diagnosis of putative Stargardt disease probands by exome sequencing. BMC Med Genet 2012;13:67.
    • (2012) BMC Med Genet , vol.13 , pp. 67
    • Strom, S.P.1    Gao, Y.Q.2    Martinez, A.3
  • 27
    • 84890219186 scopus 로고    scopus 로고
    • Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing
    • Wang X, Wang H, Sun V, et al. Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing. J Med Genet 2013;50:674-688.
    • (2013) J Med Genet , vol.50 , pp. 674-688
    • Wang, X.1    Wang, H.2    Sun, V.3
  • 28
    • 84894431411 scopus 로고    scopus 로고
    • Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: Identification of a novel genotype-phenotype correlation and clinical refinements
    • Wang F, Wang H, Tuan HF, et al. Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements. Hum Genet 2014;133:331-345.
    • (2014) Hum Genet , vol.133 , pp. 331-345
    • Wang, F.1    Wang, H.2    Tuan, H.F.3
  • 29
    • 84879147485 scopus 로고    scopus 로고
    • Next-generation sequencing-based molecular diagnosis of a Chinese patient cohort with autosomal recessive retinitis pigmentosa
    • Fu Q, Wang F, Wang H, et al. Next-generation sequencing-based molecular diagnosis of a Chinese patient cohort with autosomal recessive retinitis pigmentosa. Invest Ophthalmol Vis Sci 2013;54:4158-4166.
    • (2013) Invest Ophthalmol Vis Sci , vol.54 , pp. 4158-4166
    • Fu, Q.1    Wang, F.2    Wang, H.3
  • 30
    • 84875699003 scopus 로고    scopus 로고
    • Autosomal recessive bestrophinopathy: Differential diagnosis and treatment options
    • Boon CJ, van den Born LI, Visser L, et al. Autosomal recessive bestrophinopathy: differential diagnosis and treatment options. Ophthalmology 2013;120:809-820.
    • (2013) Ophthalmology , vol.120 , pp. 809-820
    • Boon, C.J.1    Van Den Born, L.I.2    Visser, L.3
  • 31
    • 84899730670 scopus 로고    scopus 로고
    • Molecular diagnosis of putative Stargardt disease by capture next generation sequencing
    • Zhang X, Ge X, Shi W, Huang P, Min Q, et al. Molecular diagnosis of putative Stargardt disease by capture next generation sequencing. PLoS One 2014;9(4):e95528. doi:10.1371/journal.pone.0095528.
    • (2014) PLoS One , vol.9 , Issue.4 , pp. e95528
    • Zhang, X.1    Ge, X.2    Shi, W.3    Huang, P.4    Min, Q.5
  • 32
    • 84920089952 scopus 로고    scopus 로고
    • Analysis of the ABCA4 genomic locus in Stargardt disease
    • e-pub ahead of print 31 July 2014
    • Zernant J, Xie YA, Ayuso C, et al. Analysis of the ABCA4 genomic locus in Stargardt disease. Hum Mol Genet 2014; e-pub ahead of print 31 July 2014.
    • (2014) Hum Mol Genet
    • Zernant, J.1    Xie, Y.A.2    Ayuso, C.3
  • 33
    • 84899642355 scopus 로고    scopus 로고
    • Detecting genetic variations in hereditary retinal dystrophies with next-generation sequencing technology
    • Jin X, Qu LH, Meng XH, Xu HW, Yin ZQ. Detecting genetic variations in hereditary retinal dystrophies with next-generation sequencing technology. Mol Vis 2014;20:553-560.
    • (2014) Mol Vis , vol.20 , pp. 553-560
    • Jin, X.1    Qu, L.H.2    Meng, X.H.3    Xu, H.W.4    Yin, Z.Q.5
  • 35
    • 79956344173 scopus 로고    scopus 로고
    • Phenotypic variability in patients with retinal dystrophies due to mutations in CRB1
    • Henderson RH, Mackay DS, Li Z, et al. Phenotypic variability in patients with retinal dystrophies due to mutations in CRB1. Br J Ophthalmol 2011;95:811-817.
    • (2011) Br J Ophthalmol , vol.95 , pp. 811-817
    • Henderson, R.H.1    Mackay, D.S.2    Li, Z.3
  • 36
    • 84890799156 scopus 로고    scopus 로고
    • Panel-based next generation sequencing as a reliable and efficient technique to detect mutations in unselected patients with retinal dystrophies
    • Glöckle N, Kohl S, Mohr J, et al. Panel-based next generation sequencing as a reliable and efficient technique to detect mutations in unselected patients with retinal dystrophies. Eur J Hum Genet 2014;22:99-104.
    • (2014) Eur J Hum Genet , vol.22 , pp. 99-104
    • Glöckle, N.1    Kohl, S.2    Mohr, J.3
  • 37
    • 79958845207 scopus 로고    scopus 로고
    • Seven novel mutations in the long isoform of the USH2A gene in Chinese families with nonsyndromic retinitis pigmentosa and Usher syndrome Type II
    • Xu W, Dai H, Lu T, Zhang X, Dong B, Li Y. Seven novel mutations in the long isoform of the USH2A gene in Chinese families with nonsyndromic retinitis pigmentosa and Usher syndrome Type II. Mol Vis 2011;17:1537-1552.
    • (2011) Mol Vis , vol.17 , pp. 1537-1552
    • Xu, W.1    Dai, H.2    Lu, T.3    Zhang, X.4    Dong, B.5    Li, Y.6
  • 38
    • 47049104624 scopus 로고    scopus 로고
    • Mutation profile of the CDH23 gene in 56 probands with Usher syndrome type i
    • Oshima A, Jaijo T, Aller E, et al. Mutation profile of the CDH23 gene in 56 probands with Usher syndrome type I. Hum Mutat 2008;29:E37-E46.
    • (2008) Hum Mutat , vol.29 , pp. E37-E46
    • Oshima, A.1    Jaijo, T.2    Aller, E.3
  • 39
    • 78651393550 scopus 로고    scopus 로고
    • Carrier testing for severe childhood recessive diseases by next-generation sequencing
    • Bell CJ, Dinwiddie DL, Miller NA, et al. Carrier testing for severe childhood recessive diseases by next-generation sequencing. Sci Transl Med 2011;3:65ra4.
    • (2011) Sci Transl Med , vol.3 , pp. 65ra4
    • Bell, C.J.1    Dinwiddie, D.L.2    Miller, N.A.3
  • 40
    • 84867724867 scopus 로고    scopus 로고
    • An informatics approach to analyzing the incidentalome
    • Berg JS, Adams M, Nassar N, et al. An informatics approach to analyzing the incidentalome. Genet Med 2013;15:36-44.
    • (2013) Genet Med , vol.15 , pp. 36-44
    • Berg, J.S.1    Adams, M.2    Nassar, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.