-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
10.1126/science.270.5235.467 7569999
-
Schena M Shalon D Davis R Brown P Quantitative monitoring of gene expression patterns with a complementary DNA microarray Science 1995, 270(5235):467-470. 10.1126/science.270.5235.467 7569999
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.3
Brown, P.4
-
2
-
-
0027909781
-
Multiplexed biochemical assays with biological chips
-
10.1038/364555a0 7687751
-
Fodor S Rava R Huang X Pease A Holmes C Adams C Multiplexed biochemical assays with biological chips Nature 1993, 364:555-556. 10.1038/364555a0 7687751
-
(1993)
Nature
, vol.364
, pp. 555-556
-
-
Fodor, S.1
Rava, R.2
Huang, X.3
Pease, A.4
Holmes, C.5
Adams, C.6
-
3
-
-
0028789793
-
Serial analysis of gene expression
-
10.1126/science.270.5235.484 7570003
-
Velculescu V Zhang L Vogelstein B Kinzler K Serial analysis of gene expression Science 1995, 270(5235):484-487. 10.1126/science.270.5235.484 7570003
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.4
-
4
-
-
0034130561
-
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
-
10.1038/76469 10835600
-
Brenner S Johnson M Bridgham J Golda G Lloyd D Johnson D Luo S McCurdy S Foy M Ewan M Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays Nature Biotechnology 2000, 18:630-634. 10.1038/76469 10835600
-
(2000)
Nature Biotechnology
, vol.18
, pp. 630-634
-
-
Brenner, S.1
Johnson, M.2
Bridgham, J.3
Golda, G.4
Lloyd, D.5
Johnson, D.6
Luo, S.7
McCurdy, S.8
Foy, M.9
Ewan, M.10
-
5
-
-
0026947554
-
Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
-
10.1038/ng1192-173 1345164
-
Okubo K Hori N Matoba R Niiyama T Fukushima A Kojima Y Matsubara K Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression Nature Genetics 1992, 2:173-179. 10.1038/ ng1192-173 1345164
-
(1992)
Nature Genetics
, vol.2
, pp. 173-179
-
-
Okubo, K.1
Hori, N.2
Matoba, R.3
Niiyama, T.4
Fukushima, A.5
Kojima, Y.6
Matsubara, K.7
-
6
-
-
33749604245
-
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
-
1592491 17010196 10.1186/1471-2164-7-246
-
Bainbridge M Warren R Hirst M Romanuik T Zeng T Go A Delaney A Griffith M Hickenbotham M Magrini V Mardis E Sadar M Siddiqui A Marra M Jones S Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach BMC Genomics 2006, 7:246. 1592491 17010196 10.1186/1471-2164-7-246
-
(2006)
BMC Genomics
, vol.7
, pp. 246
-
-
Bainbridge, M.1
Warren, R.2
Hirst, M.3
Romanuik, T.4
Zeng, T.5
Go, A.6
Delaney, A.7
Griffith, M.8
Hickenbotham, M.9
Magrini, V.10
Mardis, E.11
Sadar, M.12
Siddiqui, A.13
Marra, M.14
Jones, S.15
-
7
-
-
33645072440
-
Gene sequencing. The race for the $1000 genome
-
10.1126/science.311.5767.1544 16543431
-
Service RF Gene sequencing. The race for the $1000 genome Science 2006, 311(5767):1544-1546. 10.1126/science.311.5767.1544 16543431
-
(2006)
Science
, vol.311
, Issue.5767
, pp. 1544-1546
-
-
Service, R.F.1
-
8
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427 16056220
-
Margulies M Egholm M Altman W Attiya S Bader J Bemben L Berka J Braverman M Chen Y Chen Z Genome sequencing in microfabricated high-density picolitre reactors Nature 2005, 437:376-380. 1464427 16056220
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.3
Attiya, S.4
Bader, J.5
Bemben, L.6
Berka, J.7
Braverman, M.8
Chen, Y.9
Chen, Z.10
-
9
-
-
17844393848
-
Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides
-
10.1073/pnas.0501965102
-
Seo T Bai X Kim D Meng Q Shi S Ruparel H Li Z Turro N Ju J Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides Proceedings of the National Academy of Sciences 2005, 102(17):5926-5931. 10.1073/pnas.0501965102
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, pp. 5926-5931
-
-
Seo, T.1
Bai, X.2
Kim, D.3
Meng, Q.4
Shi, S.5
Ruparel, H.6
Li, Z.7
Turro, N.8
Ju, J.9
-
10
-
-
0037388048
-
Sequence information can be obtained from single DNA molecules
-
153030 12651960 10.1073/pnas.0230489100
-
Braslavsky I Hebert B Kartalov E Quake S Sequence information can be obtained from single DNA molecules Proc Natl Acad Sci USA 2003, 100(7):3960-3964. 153030 12651960 10.1073/pnas.0230489100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.7
, pp. 3960-3964
-
-
Braslavsky, I.1
Hebert, B.2
Kartalov, E.3
Quake, S.4
-
11
-
-
7444253428
-
Systems Biology and New Technologies Enable Predictive and Preventative Medicine
-
10.1126/science.1104635 15499008
-
Hood L Heath J Phelps M Lin B Systems Biology and New Technologies Enable Predictive and Preventative Medicine Science 2004, 306(5696):640-643. 10.1126/science.1104635 15499008
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 640-643
-
-
Hood, L.1
Heath, J.2
Phelps, M.3
Lin, B.4
-
12
-
-
0030681260
-
The significance of digital gene expression profiles
-
9331369
-
Audic S Claverie J The significance of digital gene expression profiles Genome Res 1997, 7:986-989. 9331369
-
(1997)
Genome Res
, vol.7
, pp. 986-989
-
-
Audic, S.1
Claverie, J.2
-
13
-
-
13244287798
-
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
-
517707 15339345 10.1186/1471-2105-5-119
-
Vencio R Brentani H Patrao D Pereira C Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) BMC Bioinformatics 2004, 5:119. 517707 15339345 10.1186/1471-2105-5-119
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 119
-
-
Vencio, R.1
Brentani, H.2
Patrao, D.3
Pereira, C.4
-
14
-
-
13444260761
-
Statistical analysis of MPSS measurements: Application to the study of LPS-activated macrophage gene expression
-
10.1073/pnas.0406555102
-
Stolovitzky G Kundaje A Held G Duggar K Haudenschild C Zhou D Vasicek T Smith K Aderem A Roach J Statistical analysis of MPSS measurements: Application to the study of LPS-activated macrophage gene expression Proceedings of the National Academy of Sciences 2005, 102(5):1402-1407. 10.1073/pnas.0406555102
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, pp. 1402-1407
-
-
Stolovitzky, G.1
Kundaje, A.2
Held, G.3
Duggar, K.4
Haudenschild, C.5
Zhou, D.6
Vasicek, T.7
Smith, K.8
Aderem, A.9
Roach, J.10
-
15
-
-
3142555412
-
Clustering analysis of SAGE data using a Poisson approach
-
463327 15239836 10.1186/gb-2004-5-7-r51
-
Cai L Huang H Blackshaw S Liu J Cepko C Wong W Clustering analysis of SAGE data using a Poisson approach Genome Biol 2004, 5(7):R51. 463327 15239836 10.1186/gb-2004-5-7-r51
-
(2004)
Genome Biol
, vol.5
, Issue.7
-
-
Cai, L.1
Huang, H.2
Blackshaw, S.3
Liu, J.4
Cepko, C.5
Wong, W.6
-
16
-
-
37249026500
-
Statistical Methods in Serial Analysis of Gene Expression (SAGE)
-
New York City, New York: Springer Zhang W, Shmulevich
-
Vencio R Brentani H Statistical Methods in Serial Analysis of Gene Expression (SAGE) Computational and Statistical Approaches to Genomics New York City, New York: Springer Zhang W, Shmulevich I 2 2006, 209-233.
-
(2006)
Computational and Statistical Approaches to Genomics
, vol.1
, Issue.2
, pp. 209-233
-
-
Vencio, R.1
Brentani, H.2
-
17
-
-
33745269780
-
Modeling Sage data with a truncated gamma-Poisson model
-
1479844 16549008 10.1186/1471-2105-7-157
-
Thygesen H Zwinderman A Modeling Sage data with a truncated gamma-Poisson model BMC Bioinformatics 2006, 7:157. 1479844 16549008 10.1186/1471-2105-7-157
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 157
-
-
Thygesen, H.1
Zwinderman, A.2
-
20
-
-
14644403631
-
An integrated tool for microarray data clustering and cluster validity assessment
-
10.1093/bioinformatics/bti190 15608048
-
Bolshakova N Azuaje F Cunningham P An integrated tool for microarray data clustering and cluster validity assessment Bioinformatics 2005, 21(4):451-455. 10.1093/bioinformatics/bti190 15608048
-
(2005)
Bioinformatics
, vol.21
, pp. 451-455
-
-
Bolshakova, N.1
Azuaje, F.2
Cunningham, P.3
-
22
-
-
3142756502
-
Open source clustering software
-
10.1093/bioinformatics/bth078 14871861
-
de Hoon M Imoto S Nolan J Miyano S Open source clustering software Bioinformatics 2004, 20:1453-1454. 10.1093/bioinformatics/bth078 14871861
-
(2004)
Bioinformatics
, vol.20
, pp. 1453-1454
-
-
de Hoon, M.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
25
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
8902363
-
Page R TreeView: An application to display phylogenetic trees on personal computers Computer Applications in the Biosciences 1996, 12(4):357-358. 8902363
-
(1996)
Computer Applications in the Biosciences
, vol.12
, Issue.4
, pp. 357-358
-
-
Page, R.1
-
27
-
-
1842854600
-
A probabilistic theory of clustering
-
10.1016/j.patcog.2003.10.003
-
Dougherty E Brun M A probabilistic theory of clustering Pattern Recognition 2004, 37(5):917-925. 10.1016/j.patcog.2003.10.003
-
(2004)
Pattern Recognition
, vol.37
, Issue.5
, pp. 917-925
-
-
Dougherty, E.1
Brun, M.2
-
28
-
-
33750506476
-
Model-based evaluation of clustering validation measures
-
10.1016/j.patcog.2006.06.026
-
Brun M Sima C Hua J Lowey J Carroll B Suh E Dougherty E Model-based evaluation of clustering validation measures Pattern Recognition 2007, 40(3):807-824. 10.1016/j.patcog.2006.06.026
-
(2007)
Pattern Recognition
, vol.40
, Issue.3
, pp. 807-824
-
-
Brun, M.1
Sima, C.2
Hua, J.3
Lowey, J.4
Carroll, B.5
Suh, E.6
Dougherty, E.7
-
29
-
-
33749428430
-
Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
-
1590054 16945146 10.1186/1471-2105-7-397
-
Datta S Datta S Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes BMC Bioinformatics 2006, 7:397. 1590054 16945146 10.1186/1471-2105-7-397
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 397
-
-
Datta, S.1
Datta, S.2
-
30
-
-
33947326847
-
Metric for measuring the effectiveness of clustering of DNA microarray expression
-
1683560 17118148 10.1186/1471-2105-7-S2-S5
-
Loganantharaj R S C Clifford J Metric for measuring the effectiveness of clustering of DNA microarray expression BMC Bioinformatics 2006, 7:SUPPL. 2 S5 1683560 17118148 10.1186/1471-2105-7-S2-S5
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Loganantharaj, R.S.C.1
Clifford, J.2
-
33
-
-
33646547951
-
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4
-
10.1038/nature04768 16688168
-
Gilchrist M Thorsson V Li B Rust A Korb M Kennedy K Hai T Bolouri H Aderem A Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4 Nature 2006, 441:173-178. 10.1038/ nature04768 16688168
-
(2006)
Nature
, vol.441
, pp. 173-178
-
-
Gilchrist, M.1
Thorsson, V.2
Li, B.3
Rust, A.4
Korb, M.5
Kennedy, K.6
Hai, T.7
Bolouri, H.8
Aderem, A.9
|