메뉴 건너뛰기




Volumn 15, Issue 7, 2015, Pages 1224-1229

Gel-aided sample preparation (GASP)-A simplified method for gel-assisted proteomic sample generation from protein extracts and intact cells

Author keywords

Bottom up proteomics; Comparative proteomics; Gel assisted sample preparation; Sample preparation; Technology

Indexed keywords

ACRYLAMIDE; CYSTEINE; PROTEIN; ACRYLIC ACID RESIN; CELL EXTRACT; POLYACRYLAMIDE GELS; PROTEOME;

EID: 84926092271     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201400436     Document Type: Article
Times cited : (97)

References (20)
  • 1
    • 84921977401 scopus 로고    scopus 로고
    • Pathway and network analysis in proteomics
    • Wu, X., Hasan, M. A., Chen, J. Y., Pathway and network analysis in proteomics. J. Theor. Biol. 2014, 362, 44-52.
    • (2014) J. Theor. Biol. , vol.362 , pp. 44-52
    • Wu, X.1    Hasan, M.A.2    Chen, J.Y.3
  • 2
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M. P., Wolters, D., Yates, J. R., 3rd, Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19, 242-247.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 3
    • 0029927505 scopus 로고    scopus 로고
    • Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
    • Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 1996, 68, 850-858.
    • (1996) Anal. Chem. , vol.68 , pp. 850-858
    • Shevchenko, A.1    Wilm, M.2    Vorm, O.3    Mann, M.4
  • 4
    • 29244464778 scopus 로고    scopus 로고
    • Tube-gel digestion: a novel proteomic approach for high throughput analysis of membrane proteins
    • Lu, X., Zhu, H., Tube-gel digestion: a novel proteomic approach for high throughput analysis of membrane proteins. Mol. Cell. Proteomics 2005, 4, 1948-1958.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1948-1958
    • Lu, X.1    Zhu, H.2
  • 5
    • 18844460394 scopus 로고    scopus 로고
    • Sample preparation and digestion for proteomic analyses using spin filters
    • Manza, L. L., Stamer, S. L., Ham, A. J., Codreanu, S. G., Liebler, D. C., Sample preparation and digestion for proteomic analyses using spin filters. Proteomics 2005, 5, 1742-1745.
    • (2005) Proteomics , vol.5 , pp. 1742-1745
    • Manza, L.L.1    Stamer, S.L.2    Ham, A.J.3    Codreanu, S.G.4    Liebler, D.C.5
  • 6
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski, J. R., Zougman, A., Nagaraj, N., Mann, M., Universal sample preparation method for proteome analysis. Nat. Methods 2009, 6, 359-362.
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 7
    • 84895538371 scopus 로고    scopus 로고
    • Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
    • Kulak, N. A., Pichler, G., Paron, I., Nagaraj, N., Mann, M., Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells. Nat. Methods 2014, 11, 319-324.
    • (2014) Nat. Methods , vol.11 , pp. 319-324
    • Kulak, N.A.1    Pichler, G.2    Paron, I.3    Nagaraj, N.4    Mann, M.5
  • 8
    • 80855128254 scopus 로고    scopus 로고
    • Deep proteome and transcriptome mapping of a human cancer cell line
    • Nagaraj, N., Wisniewski, J. R., Geiger, T., Cox, J. et al., Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol. 2011, 7, 548.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 548
    • Nagaraj, N.1    Wisniewski, J.R.2    Geiger, T.3    Cox, J.4
  • 9
    • 80053563440 scopus 로고    scopus 로고
    • Preparation and application of a partially degradable gel in mass spectrometry-based proteomic analysis
    • Zhou, J., Hu, Y., Lin, Y., Liu, H., Xie, P., Preparation and application of a partially degradable gel in mass spectrometry-based proteomic analysis. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2011, 879, 2957-2962.
    • (2011) J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. , vol.879 , pp. 2957-2962
    • Zhou, J.1    Hu, Y.2    Lin, Y.3    Liu, H.4    Xie, P.5
  • 10
    • 55049129918 scopus 로고    scopus 로고
    • A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease
    • Han, C. L., Chien, C. W., Chen, W. C., Chen, Y. R. et al., A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease. Mol. Cell. Proteomics 2008, 7, 1983-1997.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1983-1997
    • Han, C.L.1    Chien, C.W.2    Chen, W.C.3    Chen, Y.R.4
  • 11
    • 35648988480 scopus 로고    scopus 로고
    • Quantifying raft proteins in neonatal mouse brain by "tube-gel" protein digestion label-free shotgun proteomics
    • Yu, H., Wakim, B., Li, M., Halligan, B. et al., Quantifying raft proteins in neonatal mouse brain by "tube-gel" protein digestion label-free shotgun proteomics. Proteome Sci. 2007, 5, 17.
    • (2007) Proteome Sci. , vol.5 , pp. 17
    • Yu, H.1    Wakim, B.2    Li, M.3    Halligan, B.4
  • 12
    • 84872109220 scopus 로고    scopus 로고
    • Proteomic analysis of breast cancer tissues to identify biomarker candidates by gel-assisted digestion and label-free quantification methods using LC-MS/MS
    • Song, M. N., Moon, P. G., Lee, J. E., Na, M. et al., Proteomic analysis of breast cancer tissues to identify biomarker candidates by gel-assisted digestion and label-free quantification methods using LC-MS/MS. Arch. Pharm. Res. 2012, 35, 1839-1847.
    • (2012) Arch. Pharm. Res. , vol.35 , pp. 1839-1847
    • Song, M.N.1    Moon, P.G.2    Lee, J.E.3    Na, M.4
  • 13
    • 77954371209 scopus 로고    scopus 로고
    • Comparison of membrane fraction proteomic profiles of normal and cancerous human colorectal tissues with gel-assisted digestion and iTRAQ labeling mass spectrometry
    • Chen, J. S., Chen, K. T., Fan, C. W., Han, C. L. et al., Comparison of membrane fraction proteomic profiles of normal and cancerous human colorectal tissues with gel-assisted digestion and iTRAQ labeling mass spectrometry. FEBS J. 2010, 277, 3028-3038.
    • (2010) FEBS J. , vol.277 , pp. 3028-3038
    • Chen, J.S.1    Chen, K.T.2    Fan, C.W.3    Han, C.L.4
  • 14
    • 79958078403 scopus 로고    scopus 로고
    • Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy
    • Moon, P. G., Lee, J. E., You, S., Kim, T. K. et al., Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy. Proteomics 2011, 11, 2459-2475.
    • (2011) Proteomics , vol.11 , pp. 2459-2475
    • Moon, P.G.1    Lee, J.E.2    You, S.3    Kim, T.K.4
  • 15
    • 75149144996 scopus 로고    scopus 로고
    • A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
    • Olsen, J. V., Schwartz, J. C., Griep-Raming, J., Nielsen, M. L. et al., A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol. Cell. Proteomics 2009, 8, 2759-2769.
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 2759-2769
    • Olsen, J.V.1    Schwartz, J.C.2    Griep-Raming, J.3    Nielsen, M.L.4
  • 16
    • 80052769923 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
    • M111 01.
    • Michalski, A., Damoc, E., Hauschild, J. P., Lange, O. et al., Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer. Mol. Cell. Proteomics 2011, 10, M111 011015.
    • (2011) Mol. Cell. Proteomics , vol.10 , pp. 1015
    • Michalski, A.1    Damoc, E.2    Hauschild, J.P.3    Lange, O.4
  • 17
    • 65949090291 scopus 로고    scopus 로고
    • Centrifugal methods and devices for rapid in-gel digestion of proteins
    • Lazarev, A. V., Rejtar, T., Dai, S., Karger, B. L., Centrifugal methods and devices for rapid in-gel digestion of proteins. Electrophoresis 2009, 30, 966-973.
    • (2009) Electrophoresis , vol.30 , pp. 966-973
    • Lazarev, A.V.1    Rejtar, T.2    Dai, S.3    Karger, B.L.4
  • 18
    • 0025815236 scopus 로고
    • Estimation of polyacrylamide gel pore size from Ferguson plots of linear DNA fragments. II. Comparison of gels with different crosslinker concentrations, added agarose and added linear polyacrylamide
    • Holmes, D. L., Stellwagen, N. C., Estimation of polyacrylamide gel pore size from Ferguson plots of linear DNA fragments. II. Comparison of gels with different crosslinker concentrations, added agarose and added linear polyacrylamide. Electrophoresis 1991, 12, 612-619.
    • (1991) Electrophoresis , vol.12 , pp. 612-619
    • Holmes, D.L.1    Stellwagen, N.C.2
  • 19
    • 34848889259 scopus 로고    scopus 로고
    • The Paragon algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
    • Shilov, I. V., Seymour, S. L., Patel, A. A., Loboda, A. et al., The Paragon algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Mol. Cell. Proteomics 2007, 6, 1638-1655.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1638-1655
    • Shilov, I.V.1    Seymour, S.L.2    Patel, A.A.3    Loboda, A.4
  • 20
    • 0036912923 scopus 로고    scopus 로고
    • In situ alkylation with acrylamide for identification of cysteinyl residues in proteins during one- and two-dimensional sodium dodecyl sulphate-polyacrylamide gel electrophoresis
    • Mineki, R., Taka, H., Fujimura, T., Kikkawa, M. et al., In situ alkylation with acrylamide for identification of cysteinyl residues in proteins during one- and two-dimensional sodium dodecyl sulphate-polyacrylamide gel electrophoresis. Proteomics 2002, 2, 1672-1681.
    • (2002) Proteomics , vol.2 , pp. 1672-1681
    • Mineki, R.1    Taka, H.2    Fujimura, T.3    Kikkawa, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.