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Volumn 12, Issue 8, 2014, Pages 1122-1131

Unlocking the secondary gene-pool of barley with next-generation sequencing

Author keywords

Crop wild relatives; Exome capture; Genotyping by sequencing; Hordeum bulbosum; Introgression line; Next generation sequencing

Indexed keywords

HORDEUM; HORDEUM BULBOSUM; HORDEUM VULGARE SUBSP. VULGARE;

EID: 84925965698     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12219     Document Type: Article
Times cited : (82)

References (54)
  • 1
    • 0346035931 scopus 로고    scopus 로고
    • Genetic mapping of a dominant gene conferring resistance to cassava mosaic disease
    • Akano, A.O., Dixon, A.G.O., Mba, C., Barrera, E. and Fregene, M. (2002) Genetic mapping of a dominant gene conferring resistance to cassava mosaic disease. Theor. Appl. Genet. 105, 521-525.
    • (2002) Theor. Appl. Genet. , vol.105 , pp. 521-525
    • Akano, A.O.1    Dixon, A.G.O.2    Mba, C.3    Barrera, E.4    Fregene, M.5
  • 11
    • 84966138776 scopus 로고
    • Chromosome location of genes-controlling tolerance to salt (Nacl) and vigor in Hordeum-vulgare and Hordeum-chilense
    • Forster, B.P., Phillips, M.S., Miller, T.E., Baird, E. and Powell, W. (1990) Chromosome location of genes-controlling tolerance to salt (Nacl) and vigor in Hordeum-vulgare and Hordeum-chilense. Heredity, 65, 99-107.
    • (1990) Heredity , vol.65 , pp. 99-107
    • Forster, B.P.1    Phillips, M.S.2    Miller, T.E.3    Baird, E.4    Powell, W.5
  • 12
    • 34249004733 scopus 로고    scopus 로고
    • The use of wild relatives in crop improvement: a survey of developments over the last 20 years
    • Hajjar, R. and Hodgkin, T. (2007) The use of wild relatives in crop improvement: a survey of developments over the last 20 years. Euphytica, 156, 1-13.
    • (2007) Euphytica , vol.156 , pp. 1-13
    • Hajjar, R.1    Hodgkin, T.2
  • 15
    • 67349099615 scopus 로고    scopus 로고
    • Marker development and characterisation of Hordeum bulbosum introgression lines: a resource for barley improvement
    • Johnston, P.A., Timmerman-Vaughan, G.M., Farnden, K.J.F. and Pickering, R. (2009) Marker development and characterisation of Hordeum bulbosum introgression lines: a resource for barley improvement. Theor. Appl. Genet. 118, 1429-1437.
    • (2009) Theor. Appl. Genet. , vol.118 , pp. 1429-1437
    • Johnston, P.A.1    Timmerman-Vaughan, G.M.2    Farnden, K.J.F.3    Pickering, R.4
  • 16
    • 84878375620 scopus 로고    scopus 로고
    • Rph22: mapping of a novel leaf rust resistance gene introgressed from the non-host Hordeum bulbosum L. into cultivated barley (Hordeum vulgare L.)
    • Johnston, P.A., Niks, R.E., Meiyalaghan, V., Blanchet, E. and Pickering, R. (2013) Rph22: mapping of a novel leaf rust resistance gene introgressed from the non-host Hordeum bulbosum L. into cultivated barley (Hordeum vulgare L.). Theor. Appl. Genet. 126, 1613-1625.
    • (2013) Theor. Appl. Genet. , vol.126 , pp. 1613-1625
    • Johnston, P.A.1    Niks, R.E.2    Meiyalaghan, V.3    Blanchet, E.4    Pickering, R.5
  • 17
    • 84879247931 scopus 로고    scopus 로고
    • Identification of quantitative trait loci contributing to yield and seed quality parameters under terminal drought in barley advanced backcross lines
    • Kalladan, R., Worch, S., Rolletschek, H., Harshavardhan, V.T., Kuntze, L., Seiler, C., Sreenivasulu, N. and Roder, M.S. (2013) Identification of quantitative trait loci contributing to yield and seed quality parameters under terminal drought in barley advanced backcross lines. Mol. Breed. 32, 71-90.
    • (2013) Mol. Breed. , vol.32 , pp. 71-90
    • Kalladan, R.1    Worch, S.2    Rolletschek, H.3    Harshavardhan, V.T.4    Kuntze, L.5    Seiler, C.6    Sreenivasulu, N.7    Roder, M.S.8
  • 18
    • 0001454732 scopus 로고
    • Genome relationship between Hordeum-Vulgare L and H-Bulbosum L
    • Kasha, K.J. and Sadasiva, R.S. (1971) Genome relationship between Hordeum-Vulgare L and H-Bulbosum L. Chromosoma, 35, 264-287.
    • (1971) Chromosoma , vol.35 , pp. 264-287
    • Kasha, K.J.1    Sadasiva, R.S.2
  • 19
    • 84870309463 scopus 로고    scopus 로고
    • Genetic analysis and phenotypic associations for drought tolerance in Hordeum spontaneum introgression lines using SSR and SNP markers
    • Lakew, B., Henry, R.J., Ceccarelli, S., Grando, S., Eglinton, J. and Baum, M. (2013) Genetic analysis and phenotypic associations for drought tolerance in Hordeum spontaneum introgression lines using SSR and SNP markers. Euphytica, 189, 9-29.
    • (2013) Euphytica , vol.189 , pp. 9-29
    • Lakew, B.1    Henry, R.J.2    Ceccarelli, S.3    Grando, S.4    Eglinton, J.5    Baum, M.6
  • 20
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 22
    • 0032695351 scopus 로고    scopus 로고
    • Ovule and embryo culture to obtain hybrids from interspecific incompatible pollinations in chickpea
    • Mallikarjuna, N. (1999) Ovule and embryo culture to obtain hybrids from interspecific incompatible pollinations in chickpea. Euphytica, 110, 1-6.
    • (1999) Euphytica , vol.110 , pp. 1-6
    • Mallikarjuna, N.1
  • 23
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J. 17, 10-12.
    • (2011) EMBnet. J. , vol.17 , pp. 10-12
    • Martin, M.1
  • 27
    • 84884835056 scopus 로고    scopus 로고
    • Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley
    • Mascher, M., Shuangye, W., Amand, P.S., Stein, N. and Poland, J. (2013c) Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley. PLoS ONE, 8, e76925.
    • (2013) PLoS ONE , vol.8 , pp. e76925
    • Mascher, M.1    Shuangye, W.2    Amand, P.S.3    Stein, N.4    Poland, J.5
  • 28
    • 77956285690 scopus 로고    scopus 로고
    • Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
    • Meyer, M. and Kirchner, M. (2010) Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harb. Protoc. doi: 10.1101/pdb.prot5448.
    • (2010) Cold Spring Harb. Protoc.
    • Meyer, M.1    Kirchner, M.2
  • 29
    • 0002170826 scopus 로고
    • Origin, evolution, population genetics and resources for breeding of wild barley, Hordeum spontaneum, in the fertile crescent
    • In: (Shewry, P.R., ed.) -. Oxford: C.A.B. International, The Alden Press.
    • Nevo, E. (1992) Origin, evolution, population genetics and resources for breeding of wild barley, Hordeum spontaneum, in the fertile crescent. In: Genetics, Biochemistry, Molecular Biology and Biotechnology (Shewry, P.R., ed.), pp. 19-43. Oxford: C.A.B. International, The Alden Press.
    • (1992) Genetics, Biochemistry, Molecular Biology and Biotechnology , pp. 19-43
    • Nevo, E.1
  • 30
    • 84966187199 scopus 로고
    • The location of a gene for incompatibility between Hordeum-Vulgare-L and H-Bulbosum L
    • Pickering, R.A. (1983) The location of a gene for incompatibility between Hordeum-Vulgare-L and H-Bulbosum L. Heredity, 51, 455-459.
    • (1983) Heredity , vol.51 , pp. 455-459
    • Pickering, R.A.1
  • 31
    • 0343281919 scopus 로고
    • The influence of genotype and environment on chromosome elimination in crosses between Hordeum-Vulgare-L × Hordeum-Bulbosum L
    • Pickering, R.A. (1984) The influence of genotype and environment on chromosome elimination in crosses between Hordeum-Vulgare-L × Hordeum-Bulbosum L. Plant Sci. Lett. 34, 153-164.
    • (1984) Plant Sci. Lett. , vol.34 , pp. 153-164
    • Pickering, R.A.1
  • 32
    • 16344389038 scopus 로고    scopus 로고
    • Recent progress in barley improvement using wild species of Hordeum
    • Pickering, R.A. and Johnston, P.A. (2005) Recent progress in barley improvement using wild species of Hordeum. Cytogenet. Genome Res. 109, 344-349.
    • (2005) Cytogenet. Genome Res. , vol.109 , pp. 344-349
    • Pickering, R.A.1    Johnston, P.A.2
  • 33
    • 0037913615 scopus 로고
    • Disease resistant material available from the wide hybridization programme at DSIR
    • Pickering, R.A., Rennie, W.F. and Cromey, M.G. (1987) Disease resistant material available from the wide hybridization programme at DSIR. Barley Newsl. 31, 248-250.
    • (1987) Barley Newsl. , vol.31 , pp. 248-250
    • Pickering, R.A.1    Rennie, W.F.2    Cromey, M.G.3
  • 35
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland, J.A., Brown, P.J., Sorrells, M.E. and Jannink, J.L. (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS ONE, 7, e32253.
    • (2012) PLoS ONE , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 37
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 38
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team () . Austria: R Foundation for Statistical Computing. ISBN3-900051-900007-900050.
    • R Core Team (2012) Language and Environment for Statistical Computing. Austria: R Foundation for Statistical Computing. ISBN3-900051-900007-900050.
    • (2012) Language and Environment for Statistical Computing
  • 39
    • 84860595791 scopus 로고    scopus 로고
    • Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
    • Rohland, N. and Reich, D. (2012) Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Res. 22, 939-946.
    • (2012) Genome Res. , vol.22 , pp. 939-946
    • Rohland, N.1    Reich, D.2
  • 40
    • 0142028918 scopus 로고    scopus 로고
    • Mapping of Rym14(Hb), a gene introgressed from Hordeum bulbosum and conferring resistance to BaMMV and BaYMV in barley
    • Ruge, B., Linz, A., Pickering, R., Proeseler, G., Greif, P. and Wehling, P. (2003) Mapping of Rym14(Hb), a gene introgressed from Hordeum bulbosum and conferring resistance to BaMMV and BaYMV in barley. Theor. Appl. Genet. 107, 965-971.
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 965-971
    • Ruge, B.1    Linz, A.2    Pickering, R.3    Proeseler, G.4    Greif, P.5    Wehling, P.6
  • 41
    • 33747649840 scopus 로고    scopus 로고
    • Mapping of Rym16(Hb), the second soil-borne virus-resistance gene introgressed from Hordeum bulbosum
    • Ruge-Wehling, B., Linz, A., Habekuss, A. and Wehling, P. (2006) Mapping of Rym16(Hb), the second soil-borne virus-resistance gene introgressed from Hordeum bulbosum. Theor. Appl. Genet. 113, 867-873.
    • (2006) Theor. Appl. Genet. , vol.113 , pp. 867-873
    • Ruge-Wehling, B.1    Linz, A.2    Habekuss, A.3    Wehling, P.4
  • 42
    • 68349151220 scopus 로고    scopus 로고
    • A high-density transcript linkage map of barley derived from a single population
    • Sato, K., Nankaku, N. and Takeda, K. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity, 103, 110-117.
    • (2009) Heredity , vol.103 , pp. 110-117
    • Sato, K.1    Nankaku, N.2    Takeda, K.3
  • 43
    • 84857641398 scopus 로고    scopus 로고
    • High-Resolution Genotyping of Wild Barley Introgression Lines and Fine-Mapping of the Threshability Locus thresh-1 Using the Illumina GoldenGate Assay
    • Schmalenbach, I., March, T.J., Bringezu, T., Waugh, R. and Pillen, K. (2011) High-Resolution Genotyping of Wild Barley Introgression Lines and Fine-Mapping of the Threshability Locus thresh-1 Using the Illumina GoldenGate Assay. G3-Genes Genomes Genetics, 1, 187-196.
    • (2011) G3-Genes Genomes Genetics , vol.1 , pp. 187-196
    • Schmalenbach, I.1    March, T.J.2    Bringezu, T.3    Waugh, R.4    Pillen, K.5
  • 45
    • 0034867045 scopus 로고    scopus 로고
    • A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum
    • Stein, N., Herren, G. and Keller, B. (2001) A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum. Plant Breed. 120, 354-356.
    • (2001) Plant Breed. , vol.120 , pp. 354-356
    • Stein, N.1    Herren, G.2    Keller, B.3
  • 48
    • 0142018645 scopus 로고
    • Amphidiploid hybrids between Hordeum vulgare and H. bulbosum-basis for the development of new initial material for winter barley breeding
    • and () . In (Winkel, A., ed.) -. Wageningen: EUCARPIA.
    • Szigat, G. and Szigat, G. (1991) Amphidiploid hybrids between Hordeum vulgare and H. bulbosum-basis for the development of new initial material for winter barley breeding. In Vortr Pflanzenzüchtg (Winkel, A., ed.), pp. 34-39. Wageningen: EUCARPIA.
    • (1991) Vortr Pflanzenzüchtg , pp. 34-39
    • Szigat, G.1    Szigat, G.2
  • 49
    • 0030880972 scopus 로고    scopus 로고
    • Seed banks and molecular maps: unlocking genetic potential from the wild
    • Tanksley, S.D. and McCouch, S.R. (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science, 277, 1063-1066.
    • (1997) Science , vol.277 , pp. 1063-1066
    • Tanksley, S.D.1    McCouch, S.R.2
  • 52
    • 0034053673 scopus 로고    scopus 로고
    • Hordeum bulbosum - a new source of disease resistance - transfer of resistance to leaf rust and mosaic viruses from H-bulbosum into winter barley
    • Walther, U., Rapke, H., Proeseler, G. and Szigat, G. (2000) Hordeum bulbosum - a new source of disease resistance - transfer of resistance to leaf rust and mosaic viruses from H-bulbosum into winter barley. Plant Breed. 119, 215-218.
    • (2000) Plant Breed. , vol.119 , pp. 215-218
    • Walther, U.1    Rapke, H.2    Proeseler, G.3    Szigat, G.4
  • 53
    • 84925961593 scopus 로고    scopus 로고
    • and () HarvEST: Barley EST database version 1.44.
    • Wanamaker, S., Close, T., Roose, M. and Lyon, M. (2006) HarvEST: Barley EST database version 1.44.
    • (2006)
    • Wanamaker, S.1    Close, T.2    Roose, M.3    Lyon, M.4
  • 54
    • 0000038477 scopus 로고
    • The cytology of hybrids between Hordeum vulgare and H. bulbosum revisited
    • Xu, J. and Snape, J.W. (1988) The cytology of hybrids between Hordeum vulgare and H. bulbosum revisited. Genome Biol. 30, 486-494.
    • (1988) Genome Biol. , vol.30 , pp. 486-494
    • Xu, J.1    Snape, J.W.2


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