메뉴 건너뛰기




Volumn 57, Issue 9, 2014, Pages 487-493

Exome sequencing identifies a recessive PIGN splice site mutation as a cause of syndromic Congenital Diaphragmatic Hernia

Author keywords

CDH; Congenital Diaphragmatic Hernia; Exome sequencing; GPI anchor; PIGN

Indexed keywords

PHOSPHATIDYLINOSITOL; GLYCOSYLPHOSPHATIDYLINOSITOL ETHANOLAMINE PHOSPHATE TRANSFERASE 1, HUMAN; PHOSPHOTRANSFERASE; RNA SPLICING;

EID: 84925944413     PISSN: 17697212     EISSN: 18780849     Source Type: Journal    
DOI: 10.1016/j.ejmg.2014.05.001     Document Type: Article
Times cited : (43)

References (30)
  • 2
    • 33745904714 scopus 로고    scopus 로고
    • Hypomorphic promoter mutation in PIGM causes inherited glycosylphosphatidylinositol deficiency
    • Almeida A.M., Murakami Y., Layton D.M., Hillmen P., Sellick G.S., Maeda Y., et al. Hypomorphic promoter mutation in PIGM causes inherited glycosylphosphatidylinositol deficiency. Nat Med 2006, 12:846-851.
    • (2006) Nat Med , vol.12 , pp. 846-851
    • Almeida, A.M.1    Murakami, Y.2    Layton, D.M.3    Hillmen, P.4    Sellick, G.S.5    Maeda, Y.6
  • 3
    • 84889652964 scopus 로고    scopus 로고
    • Identification of dosage-sensitive genes in fetuses referred with severe isolated congenital diaphragmatic hernia
    • Brady P.D., Dekoninck P., Fryns J.P., Devriendt K., Deprest J.A., Vermeesch J.R. Identification of dosage-sensitive genes in fetuses referred with severe isolated congenital diaphragmatic hernia. Prenat Diagn 2013, 33:1283-1292.
    • (2013) Prenat Diagn , vol.33 , pp. 1283-1292
    • Brady, P.D.1    Dekoninck, P.2    Fryns, J.P.3    Devriendt, K.4    Deprest, J.A.5    Vermeesch, J.R.6
  • 4
    • 84874901762 scopus 로고    scopus 로고
    • Understanding human glycosylation disorders: biochemistry leads the charge
    • Freeze H.H. Understanding human glycosylation disorders: biochemistry leads the charge. JBiol Chem 2013, 288:6936-6945.
    • (2013) JBiol Chem , vol.288 , pp. 6936-6945
    • Freeze, H.H.1
  • 6
    • 24044481642 scopus 로고    scopus 로고
    • New mutant Chinese hamster ovary cell representing an unknown gene for attachment of glycosylphosphatidylinositol to proteins
    • Hong Y., Kang J.Y., Kim Y.U., Shin D.J., Choy H.E., Maeda Y., et al. New mutant Chinese hamster ovary cell representing an unknown gene for attachment of glycosylphosphatidylinositol to proteins. Biochem Biophys Res Commun 2005, 335:1060-1069.
    • (2005) Biochem Biophys Res Commun , vol.335 , pp. 1060-1069
    • Hong, Y.1    Kang, J.Y.2    Kim, Y.U.3    Shin, D.J.4    Choy, H.E.5    Maeda, Y.6
  • 7
    • 0033521023 scopus 로고    scopus 로고
    • Pig-n, a mammalian homologue of yeast Mcd4p, is involved in transferring phosphoethanolamine to the first mannose of the glycosylphosphatidylinositol
    • Hong Y., Maeda Y., Watanabe R., Ohishi K., Mishkind M., Riezman H., et al. Pig-n, a mammalian homologue of yeast Mcd4p, is involved in transferring phosphoethanolamine to the first mannose of the glycosylphosphatidylinositol. JBiol Chem 1999, 274:35099-35106.
    • (1999) JBiol Chem , vol.274 , pp. 35099-35106
    • Hong, Y.1    Maeda, Y.2    Watanabe, R.3    Ohishi, K.4    Mishkind, M.5    Riezman, H.6
  • 8
    • 79960561088 scopus 로고    scopus 로고
    • Hyperphosphatasia-mental retardation syndrome due to PIGV mutations: expanded clinical spectrum
    • Horn D., Krawitz P., Mannhardt A., Korenke G.C., Meinecke P. Hyperphosphatasia-mental retardation syndrome due to PIGV mutations: expanded clinical spectrum. Am J Med Genet A 2011, 155A:1917-1922.
    • (2011) Am J Med Genet A , vol.155 A , pp. 1917-1922
    • Horn, D.1    Krawitz, P.2    Mannhardt, A.3    Korenke, G.C.4    Meinecke, P.5
  • 9
    • 84862777450 scopus 로고    scopus 로고
    • The phenotype of a germline mutation in PIGA: the gene somatically mutated in paroxysmal nocturnal hemoglobinuria
    • Johnston J.J., Gropman A.L., Sapp J.C., Teer J.K., Martin J.M., Liu C.F., et al. The phenotype of a germline mutation in PIGA: the gene somatically mutated in paroxysmal nocturnal hemoglobinuria. Am J Hum Genet 2012, 90:295-300.
    • (2012) Am J Hum Genet , vol.90 , pp. 295-300
    • Johnston, J.J.1    Gropman, A.L.2    Sapp, J.C.3    Teer, J.K.4    Martin, J.M.5    Liu, C.F.6
  • 11
    • 84863985546 scopus 로고    scopus 로고
    • Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation
    • Krawitz P.M., Murakami Y., Hecht J., Kruger U., Holder S.E., Mortier G.R., et al. Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation. Am J Hum Genet 2012, 91:146-151.
    • (2012) Am J Hum Genet , vol.91 , pp. 146-151
    • Krawitz, P.M.1    Murakami, Y.2    Hecht, J.3    Kruger, U.4    Holder, S.E.5    Mortier, G.R.6
  • 12
    • 77957555078 scopus 로고    scopus 로고
    • Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome
    • Krawitz P.M., Schweiger M.R., Rodelsperger C., Marcelis C., Kolsch U., Meisel C., et al. Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome. Nat Genet 2010, 42:827-829.
    • (2010) Nat Genet , vol.42 , pp. 827-829
    • Krawitz, P.M.1    Schweiger, M.R.2    Rodelsperger, C.3    Marcelis, C.4    Kolsch, U.5    Meisel, C.6
  • 13
    • 84883146458 scopus 로고    scopus 로고
    • Anovel intellectual disability syndrome caused by GPI anchor deficiency due to homozygous mutations in PIGT
    • Kvarnung M., Nilsson D., Lindstrand A., Korenke G.C., Chiang S.C., Blennow E., et al. Anovel intellectual disability syndrome caused by GPI anchor deficiency due to homozygous mutations in PIGT. JMed Genet 2013, 50(8):521-528.
    • (2013) JMed Genet , vol.50 , Issue.8 , pp. 521-528
    • Kvarnung, M.1    Nilsson, D.2    Lindstrand, A.3    Korenke, G.C.4    Chiang, S.C.5    Blennow, E.6
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 16
    • 79960763462 scopus 로고    scopus 로고
    • DbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions
    • Liu X., Jian X., Boerwinkle E. dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions. Hum Mutat 2011, 32:894-899.
    • (2011) Hum Mutat , vol.32 , pp. 894-899
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 17
    • 79958057768 scopus 로고    scopus 로고
    • Multiple congenital anomalies-hypotonia-seizures syndrome is caused by a mutation in PIGN
    • Maydan G., Noyman I., Har-Zahav A., Neriah Z.B., Pasmanik-Chor M., Yeheskel A., et al. Multiple congenital anomalies-hypotonia-seizures syndrome is caused by a mutation in PIGN. JMed Genet 2011, 48:383-389.
    • (2011) JMed Genet , vol.48 , pp. 383-389
    • Maydan, G.1    Noyman, I.2    Har-Zahav, A.3    Neriah, Z.B.4    Pasmanik-Chor, M.5    Yeheskel, A.6
  • 18
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: a mapreduce framework for analyzing next-generation DNA sequencing data
    • McKenna A., Hanna M., Banks E., Sivachenko A., Cibulskis K., Kernytsky A., et al. The genome analysis toolkit: a mapreduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010, 20:1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 19
    • 84859495007 scopus 로고    scopus 로고
    • Mutations in the glycosylphosphatidylinositol gene PIGL cause CHIME syndrome
    • Ng B.G., Hackmann K., Jones M.A., Eroshkin A.M., He P., Wiliams R., et al. Mutations in the glycosylphosphatidylinositol gene PIGL cause CHIME syndrome. Am J Hum Genet 2012, 90:685-688.
    • (2012) Am J Hum Genet , vol.90 , pp. 685-688
    • Ng, B.G.1    Hackmann, K.2    Jones, M.A.3    Eroshkin, A.M.4    He, P.5    Wiliams, R.6
  • 20
    • 84900517166 scopus 로고    scopus 로고
    • PIGN mutations cause congenital anomalies, developmental delay, hypotonia, epilepsy, and progressive cerebellar atrophy
    • Ohba C., Okamoto N., Murakami Y., Suzuki Y., Tsurusaki Y., Nakashima M., et al. PIGN mutations cause congenital anomalies, developmental delay, hypotonia, epilepsy, and progressive cerebellar atrophy. Neurogenetics 2014, 15:85-92.
    • (2014) Neurogenetics , vol.15 , pp. 85-92
    • Ohba, C.1    Okamoto, N.2    Murakami, Y.3    Suzuki, Y.4    Tsurusaki, Y.5    Nakashima, M.6
  • 21
    • 0034684716 scopus 로고    scopus 로고
    • Variability in the phenotypic expression of fryns syndrome: a report of two sibships
    • Ramsing M., Gillessen-Kaesbach G., Holzgreve W., Fritz B., Rehder H. Variability in the phenotypic expression of fryns syndrome: a report of two sibships. Am J Med Genet 2000, 95:415-424.
    • (2000) Am J Med Genet , vol.95 , pp. 415-424
    • Ramsing, M.1    Gillessen-Kaesbach, G.2    Holzgreve, W.3    Fritz, B.4    Rehder, H.5
  • 22
    • 84866551236 scopus 로고    scopus 로고
    • Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease
    • Sifrim A., Van Houdt J.K., Tranchevent L.C., Nowakowska B., Sakai R., Pavlopoulos G.A., et al. Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease. Genome Med 2012, 4:73.
    • (2012) Genome Med , vol.4 , pp. 73
    • Sifrim, A.1    Van Houdt, J.K.2    Tranchevent, L.C.3    Nowakowska, B.4    Sakai, R.5    Pavlopoulos, G.A.6
  • 23
    • 0033888928 scopus 로고    scopus 로고
    • Congenital diaphragmatic hernia: a meta-analysis of mortality factors
    • Skari H., Bjornland K., Haugen G., Egeland T., Emblem R. Congenital diaphragmatic hernia: a meta-analysis of mortality factors. JPediatr Surg 2000, 35:1187-1197.
    • (2000) JPediatr Surg , vol.35 , pp. 1187-1197
    • Skari, H.1    Bjornland, K.2    Haugen, G.3    Egeland, T.4    Emblem, R.5
  • 24
    • 0942279747 scopus 로고    scopus 로고
    • Fryns syndrome: a review of the phenotype and diagnostic guidelines
    • Slavotinek A.M. Fryns syndrome: a review of the phenotype and diagnostic guidelines. Am J Med Genet A 2004, 124A:427-433.
    • (2004) Am J Med Genet A , vol.124 A , pp. 427-433
    • Slavotinek, A.M.1
  • 25
    • 34249037677 scopus 로고    scopus 로고
    • Single gene disorders associated with congenital diaphragmatic hernia
    • Slavotinek A.M. Single gene disorders associated with congenital diaphragmatic hernia. Am J Med Genet C Semin Med Genet 2007, 145C:172-183.
    • (2007) Am J Med Genet C Semin Med Genet , vol.145 C , pp. 172-183
    • Slavotinek, A.M.1
  • 26
    • 78649655581 scopus 로고    scopus 로고
    • Targeted array comparative genomic hybridisation (array CGH) identifies genomic imbalances associated with isolated congenital diaphragmatic hernia (CDH)
    • Srisupundit K., Brady P.D., Devriendt K., Fryns J.P., Cruz-Martinez R., Gratacos E., et al. Targeted array comparative genomic hybridisation (array CGH) identifies genomic imbalances associated with isolated congenital diaphragmatic hernia (CDH). Prenat Diagn 2010, 30(12-13):1198-1206.
    • (2010) Prenat Diagn , vol.30 , Issue.12-13 , pp. 1198-1206
    • Srisupundit, K.1    Brady, P.D.2    Devriendt, K.3    Fryns, J.P.4    Cruz-Martinez, R.5    Gratacos, E.6
  • 27
    • 55049095560 scopus 로고    scopus 로고
    • Associated malformations in cases with congenital diaphragmatic hernia
    • Stoll C., Alembik Y., Dott B., Roth M.P. Associated malformations in cases with congenital diaphragmatic hernia. Genet Couns 2008, 19:331-339.
    • (2008) Genet Couns , vol.19 , pp. 331-339
    • Stoll, C.1    Alembik, Y.2    Dott, B.3    Roth, M.P.4
  • 28
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
    • Wang K., Li M., Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010, 38:e164.
    • (2010) Nucleic Acids Res , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 29
    • 79955542031 scopus 로고    scopus 로고
    • Genomic alterations that contribute to the development of isolated and non-isolated congenital diaphragmatic hernia
    • Wat M.J., Veenma D., Hogue J., Holder A.M., Yu Z., Wat J.J., et al. Genomic alterations that contribute to the development of isolated and non-isolated congenital diaphragmatic hernia. JMed Genet 2011, 48:299-307.
    • (2011) JMed Genet , vol.48 , pp. 299-307
    • Wat, M.J.1    Veenma, D.2    Hogue, J.3    Holder, A.M.4    Yu, Z.5    Wat, J.J.6
  • 30
    • 0035958038 scopus 로고    scopus 로고
    • Its8, a fission yeast homolog of Mcd4 and Pig-n, is involved in GPI anchor synthesis and shares an essential function with calcineurin in cytokinesis
    • Yada T., Sugiura R., Kita A., Itoh Y., Lu Y., Hong Y., et al. Its8, a fission yeast homolog of Mcd4 and Pig-n, is involved in GPI anchor synthesis and shares an essential function with calcineurin in cytokinesis. JBiol Chem 2001, 276:13579-13586.
    • (2001) JBiol Chem , vol.276 , pp. 13579-13586
    • Yada, T.1    Sugiura, R.2    Kita, A.3    Itoh, Y.4    Lu, Y.5    Hong, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.