Minimac2: Faster genotype imputation

Bioinformatics

Volumn 31, Issue 5, 2015, Pages 782-784

  Fuchsberger, Christian ^a   Abecasis, Gonçalo R ^a   Hinds, David A ^b  

^a UNIVERSITY OF MICHIGAN   (United States)

^b 23andMe Inc ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; COMPUTER LANGUAGE; GENETICS; GENOME-WIDE ASSOCIATION STUDY; GENOTYPE; HAPLOTYPE; HUMAN; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM; SOFTWARE;

COMPUTATIONAL BIOLOGY; GENOME-WIDE ASSOCIATION STUDY; GENOTYPE; HAPLOTYPES; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; PROGRAMMING LANGUAGES; SOFTWARE;

EID: 84925937250     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu704     Document Type: Article

References (14)

1. Browning, B.L. and Browning, S.R. (2009) A unified approach to genotype imputation and haplotype phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet., 84, 210-223.
2. Cottingham, R.W. et al. (1993) Faster sequential genetic linkage computations. Am. J. Hum. Genet., 53, 252-263.
3. Francioli, L.C. et al. (2014) Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat. Genet., 46, 818-825.
4. Gudbjartsson, D.F. et al. (2000) Allegro, a new computer program for multipoint linkage analysis. Nat. Genet., 25, 12-13.
5. Howie, B. et al. (2012) Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat. Genet., 44, 955-959.
6. Hudson, R.R. (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
7. Li, Y. et al. (2009) Genotype imputation. Annu. Rev. Genom. Hum. Genet., 10, 387-406.
8. Marchini, J. et al. (2007) A new multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet., 39, 906-913.
9. Morrison, A.C. et al. (2013) Whole-genome sequence-based analysis of high-density lipoprotein cholesterol. Nat. Genet., 45, 899-901.
10. Plagnol, V. and Wall, J.D. (2006) Possible ancestral structure in human populations. PLoS Genet., 2, e105.
11. Press, W. et al. (2007). Numerical Recipes: The Art of Scientific Computing. Cambridge University Press, New York.
12. Purcell, S. et al. (2007) PLINK: a toolset for whole-genome association and population-based linkage analysis. Am. J. Hum. Genet., 81, 559-575.
13. Scott, L.J. et al. (2007) A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science, 316, 1341-1345.
14. The 1000 Genomes Project (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.