메뉴 건너뛰기




Volumn 1188, Issue , 2014, Pages 351-364

MaxQuant for in-depth analysis of large SILAC datasets

Author keywords

Computational proteomics; Experimental design; Large scale data analysis; Peptide quantification; Protein quantification

Indexed keywords

ARTICLE; BIOINFORMATICS; CELL LABELING; COMPUTER PROGRAM; MASS SPECTROMETRY; MAXQUANT; PRIORITY JOURNAL; PROCEDURES CONCERNING CELLS; PROTEIN ANALYSIS; PROTEIN PROCESSING; PROTEOMICS; STABLE ISOTOPE LABELING BY AMINO ACID IN CELL CULTURE; BIOLOGY; CELL CULTURE; CHEMISTRY; COMPUTER INTERFACE; ISOTOPE LABELING; LIQUID CHROMATOGRAPHY; PROCEDURES; STATISTICS;

EID: 84925884333     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-1142-4_24     Document Type: Article
Times cited : (70)

References (14)
  • 1
    • 34547572949 scopus 로고    scopus 로고
    • Is proteomics the new genomics?
    • Cox J, Mann M (2007) Is proteomics the new genomics? Cell 130:395-398
    • (2007) Cell , vol.130 , pp. 395-398
    • Cox, J.1    Mann, M.2
  • 2
    • 79959424627 scopus 로고    scopus 로고
    • Quantitative, highresolution proteomics for data-driven systems biology
    • Cox J, Mann M (2011) Quantitative, highresolution proteomics for data-driven systems biology. Annu Rev Biochem 80:273-299
    • (2011) Annu Rev Biochem , vol.80 , pp. 273-299
    • Cox, J.1    Mann, M.2
  • 3
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass-spectrometry-based proteome quantifi cation of haploid versus diploid yeast
    • de Godoy LM, Olsen JV, Cox J et al (2008) Comprehensive mass-spectrometry-based proteome quantifi cation of haploid versus diploid yeast. Nature 455:1251-1254
    • (2008) Nature , vol.455 , pp. 1251-1254
    • De Godoy, L.M.1    Olsen, J.V.2    Cox, J.3
  • 4
    • 34247396011 scopus 로고    scopus 로고
    • A practical recipe for stable isotope labeling by amino acids in cell culture SILAC
    • Ong SE, Mann M (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1:2650-2660
    • (2006) Nat Protoc , vol.1 , pp. 2650-2660
    • Ong, S.E.1    Mann, M.2
  • 5
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, Blagoev B, Kratchmarova I et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3
  • 6
    • 33845329203 scopus 로고    scopus 로고
    • Functional and quantitative proteomics using SILAC
    • Mann M (2006) Functional and quantitative proteomics using SILAC. Nat Rev Mol Cell Biol 7:952-958
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 952-958
    • Mann, M.1
  • 7
    • 79551663189 scopus 로고    scopus 로고
    • Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
    • Geiger T, Wisniewski JR, Cox J et al (2011) Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nat Protoc 6:147-157
    • (2011) Nat Protoc , vol.6 , pp. 147-157
    • Geiger, T.1    Wisniewski, J.R.2    Cox, J.3
  • 8
    • 77952226764 scopus 로고    scopus 로고
    • Super-SILAC mix for quantitative proteomics of human tumor tissue
    • Geiger T, Cox J, Ostasiewicz P et al (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat Methods 7:383-385
    • (2010) Nat Methods , vol.7 , pp. 383-385
    • Geiger, T.1    Cox, J.2    Ostasiewicz, P.3
  • 9
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identifi cation rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantifi cation
    • Cox J, Mann M (2008) MaxQuant enables high peptide identifi cation rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantifi cation. Nat Biotechnol 26:1367-1372
    • (2008) Nat Biotechnol , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 10
    • 67650725988 scopus 로고    scopus 로고
    • Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap
    • Cox J, Mann M (2009) Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap. J Am Soc Mass Spectrom 20: 1477-1485
    • (2009) J Am Soc Mass Spectrom , vol.20 , pp. 1477-1485
    • Cox, J.1    Mann, M.2
  • 11
    • 79953701087 scopus 로고    scopus 로고
    • Andromeda: A peptide search engine integrated into the MaxQuant environment
    • Cox J, Neuhauser N, Michalski A et al (2011) Andromeda: a peptide search engine integrated into the MaxQuant environment. J Proteome Res 10:1794-1805
    • (2011) J Proteome Res , vol.10 , pp. 1794-1805
    • Cox, J.1    Neuhauser, N.2    Michalski, A.3
  • 12
    • 84873508256 scopus 로고    scopus 로고
    • 1D and 2D annotation enrichment: A statistical method integrating quantitative proteomics with complementary high-throughput data
    • Cox J, Mann M (2012) 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data. BMC Bioinform 13(Suppl 16):S12
    • (2012) BMC Bioinform , vol.13 , Issue.SUPPL. 16
    • Cox, J.1    Mann, M.2
  • 13
    • 76949097340 scopus 로고    scopus 로고
    • Quantitative proteomics reveals subset-specifi c viral recognition in dendritic cells
    • Luber CA, Cox J, Lauterbach H et al (2010) Quantitative proteomics reveals subset-specifi c viral recognition in dendritic cells. Immunity 32:279-289
    • (2010) Immunity , vol.32 , pp. 279-289
    • Luber, C.A.1    Cox, J.2    Lauterbach, H.3
  • 14
    • 80052674536 scopus 로고    scopus 로고
    • Software lock mass by two-dimensional minimization of peptide mass errors
    • Cox J, Michalski A, Mann M (2011) Software lock mass by two-dimensional minimization of peptide mass errors. J Am Soc Mass Spectrom 22:1373-1380
    • (2011) J Am Soc Mass Spectrom , vol.22 , pp. 1373-1380
    • Cox, J.1    Michalski, A.2    Mann, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.