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Cox J, Mann M (2007) Is proteomics the new genomics? Cell 130:395-398
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Cell
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Cox J, Mann M (2011) Quantitative, highresolution proteomics for data-driven systems biology. Annu Rev Biochem 80:273-299
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Annu Rev Biochem
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Comprehensive mass-spectrometry-based proteome quantifi cation of haploid versus diploid yeast
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de Godoy LM, Olsen JV, Cox J et al (2008) Comprehensive mass-spectrometry-based proteome quantifi cation of haploid versus diploid yeast. Nature 455:1251-1254
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Nature
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A practical recipe for stable isotope labeling by amino acids in cell culture SILAC
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Ong SE, Mann M (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1:2650-2660
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Nat Protoc
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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
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Ong SE, Blagoev B, Kratchmarova I et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
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Functional and quantitative proteomics using SILAC
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Mann M (2006) Functional and quantitative proteomics using SILAC. Nat Rev Mol Cell Biol 7:952-958
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Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
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Geiger T, Wisniewski JR, Cox J et al (2011) Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nat Protoc 6:147-157
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Nat Protoc
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Super-SILAC mix for quantitative proteomics of human tumor tissue
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Geiger T, Cox J, Ostasiewicz P et al (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat Methods 7:383-385
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Nat Methods
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MaxQuant enables high peptide identifi cation rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantifi cation
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Cox J, Mann M (2008) MaxQuant enables high peptide identifi cation rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantifi cation. Nat Biotechnol 26:1367-1372
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Nat Biotechnol
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Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap
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Cox J, Mann M (2009) Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap. J Am Soc Mass Spectrom 20: 1477-1485
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J Am Soc Mass Spectrom
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Andromeda: A peptide search engine integrated into the MaxQuant environment
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Cox J, Neuhauser N, Michalski A et al (2011) Andromeda: a peptide search engine integrated into the MaxQuant environment. J Proteome Res 10:1794-1805
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J Proteome Res
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1D and 2D annotation enrichment: A statistical method integrating quantitative proteomics with complementary high-throughput data
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Cox J, Mann M (2012) 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data. BMC Bioinform 13(Suppl 16):S12
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BMC Bioinform
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Quantitative proteomics reveals subset-specifi c viral recognition in dendritic cells
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Luber CA, Cox J, Lauterbach H et al (2010) Quantitative proteomics reveals subset-specifi c viral recognition in dendritic cells. Immunity 32:279-289
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Immunity
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Software lock mass by two-dimensional minimization of peptide mass errors
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Cox J, Michalski A, Mann M (2011) Software lock mass by two-dimensional minimization of peptide mass errors. J Am Soc Mass Spectrom 22:1373-1380
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J Am Soc Mass Spectrom
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