KENDRICK: A Domain Specific Language and platform for mathematical epidemiological modelling

Proceedings - 2015 IEEE RIVF International Conference on Computing and Communication Technologies: Research, Innovation, and Vision for Future, IEEE RIVF 2015

Volumn , Issue , 2015, Pages 132-137

  Anh, Bui Thi Mai ^a,b   Stinckwich, Serge ^b,d   Ziane, Mikal ^c   Roche, Benjamin ^b   Vinh, Ho Tuong ^a,b  

^a VIETNAM NATIONAL UNIVERSITY   (Viet Nam)

^b Sorbonne Universités   (France)

^c UNIVERSITÉ PARIS DESCARTES   (France)

^d UNIVERSITÉ DE CAEN   (France)

Author keywords

compartmental model; domain specific language; epidemiological modelling

Indexed keywords

COMPUTER AIDED SOFTWARE ENGINEERING; COMPUTER SIMULATION LANGUAGES; DISEASE CONTROL; PROBLEM ORIENTED LANGUAGES; REUSABILITY;

COMPARTMENTAL MODEL; COMPUTER INSTRUCTIONS; DOMAIN SPECIFIC LANGUAGES; GENERAL-PURPOSE PROGRAMMING LANGUAGE; MANAGEMENT STRATEGIES; MATHEMATICAL EPIDEMIOLOGY; STATISTICAL COMPARISONS; TRANSMISSION MECHANISMS;

MODELING LANGUAGES;

EID: 84925862171     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/RIVF.2015.7049888     Document Type: Conference Paper

References (22)

1. M. J. Keeling and P. Rohani, Modeling Infectious Diseases. Princeton: Princeton University Press, 2008.
2. S. Gandon, M. J. Mackinnon, S. Nee, and a. F. Read, "Imperfect vac-cines and the evolution of pathogen virulence, " Nature, vol. 414(6865), pp. 751-756, 2001.
3. C. T. Bauch, E. Szusz, and L. P. Garrison, "Scheduling of measles vaccination in low-income countries: Projections of a dynamic model, " Vaccine, vol. 27(31), pp. 4090-4098, 2009.
4. K. Dietz and J. Heesterbeek, "Daniel bernoullis epidemiological model revisited, " Journal Mathematical Biosciences, vol. 180, pp. 1-21, 2002.
5. W. O. Kermack and A. G. McKendrick, "Contributions to the mathe-matical theory of epidemics, " Bulletin of mathematical biology, vol. 53 (1), pp. 33-55, 1991.
6. R. M. Anderson and R. M. May, Infectious diseases of humans: Dynamics and control. Oxford: Oxford Science Publications, 1991.
7. D. F. Griffiths and D. J. Higham, Numerical methods for ordinary differential equations. Springer Undergraduate Mathematics Series: Springer, 2010.
8. D. T. Gillespie, "Exact stochastic simulation of coupled chemical reactions, " The Journal of Physical Chemistry, vol. 81, pp. 2340-2361, 1977.
9. B. Roche, J. M. Drake, and P. Rohani, "An agent-based model to study the epidemiological and evolutionary dynamics of influenza viruses, " BMC Bioinformatics, vol. 12, p. 87, 2011.
10. A. Van Deursen, P. Klint, and J. Viser, "Domain-specific languages: An annotated bibliography, " ACM SIGPLAN Notices, vol. 35 (6), pp. 26-36, 2000.
11. M. Mernik, J. Heering, and A. M. Sloane, "When and how to develop domain-specific languages, " ACM Computing Surveys, vol. 37 (4), pp. 316-344, 2005.
12. T. Parr, Language implementation patterns: create your own domain-specific and general programming languages. Pragmatic Bookshelf, 2009.
13. R. M. Anderson and R. M. May, Infectious diseases of humans. Oxford university press Oxford, 1991, vol. 1.
14. Matlab, the language of technical computing. [Online]. Available: http://www.mathworks.com/products/matlab/
15. A. Fall and J. Fall, "A domain-specific language for models of landscape dynamics, " Ecological Modelling, vol. 141, pp. 1-18, 2001.
16. P. Degenne, D. Lo Seen, D. Parigot, R. Forax, A. Tran, A. Ait Lahcen, O. Curé, and R. Jeansoulin, "Design of a domain specific language for modelling processes in landscapes, " Ecological Modelling, vol. 220, pp. 3527-3535, 2009.
17. R. A. van Engelen, "Atmol: A domain-specific language for atmospheric modelling, " CIT Journal of Computing and Information Technology, vol. 9, pp. 289-303, 2001, special Issue on Domain-Specific Languages Part I.
18. T. Antao, I. Hastings, and P. McBurney, "Ronald: A domain-specific language to study the interactions between malaria infections and drug treatments, " in Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, 2012, pp. 785-790.
19. O. Schneider, C. Dutchyn, and N. Osgood, "Towards frabjous: a two-level system for functional reactive agent-based epidemic simulation, " in Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP, 2008, pp. 747-752.
20. Scilab, open source software for numerical computation. [Online]. Available: http://www.scilab.org/
21. Modelica language. [Online]. Available: https://www.modelica.org/
22. J. K. S.B. Edlund, M.A. Davis, "The spatiotemporal epidemiological modeler, " in Proceedings of the First ACM International Health Infor-matics Symposium, 2010, pp. 817-820.