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Volumn 16, Issue 3, 2015, Pages 5285-5298

Species-dependent splice recognition of a cryptic exon resulting from a recurrent intronic CEP290 mutation that causes congenital blindness

Author keywords

CEP290; Deep intronic mutation; Leber congenital amaurosis; Pre mRNA splicing

Indexed keywords

ANIMAL CELL; ARTICLE; CEP290 GENE; CONTROLLED STUDY; EXON; GENE; GENE EXPRESSION; GENE MUTATION; GENE SEQUENCE; HUMAN; HUMAN CELL; LEBER CONGENITAL AMAUROSIS; MOUSE; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SPLICING; SEQUENCE ALIGNMENT; SITE DIRECTED MUTAGENESIS; ANIMAL; CELL LINE; DOG; DROSOPHILA; GENETICS; HEK293 CELL LINE; INTRON; METABOLISM; MUTATION; NUCLEOTIDE SEQUENCE; PATHOLOGY; SPECIES DIFFERENCE;

EID: 84925861558     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms16035285     Document Type: Article
Times cited : (26)

References (35)
  • 1
    • 33744757686 scopus 로고    scopus 로고
    • In-frame deletion in a novel centrosomal/ciliary protein CEP290/NPHP6 perturbs its interaction with RPGR and results in early-onset retinal degeneration in the rd16 mouse
    • Chang, B.; Khanna, H.; Hawes, N.; Jimeno, D.; He, S.; Lillo, C.; Parapuram, S.K.; Cheng, H.; Scott, A.; Hurd, R.E.; et al. In-frame deletion in a novel centrosomal/ciliary protein CEP290/NPHP6 perturbs its interaction with RPGR and results in early-onset retinal degeneration in the rd16 mouse. Hum. Mol. Genet. 2006, 15, 1847–1857.
    • (2006) Hum. Mol. Genet , vol.15 , pp. 1847-1857
    • Chang, B.1    Khanna, H.2    Hawes, N.3    Jimeno, D.4    He, S.5    Lillo, C.6    Parapuram, S.K.7    Cheng, H.8    Scott, A.9    Hurd, R.E.10
  • 2
    • 77956388187 scopus 로고    scopus 로고
    • CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content
    • Craige, B.; Tsao, C.C.; Diener, D.R.; Hou, Y.; Lechtreck, K.F.; Rosenbaum, J.L.; Witman, G.B. CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content. J. Cell Biol. 2010, 190, 927–940.
    • (2010) J. Cell Biol , vol.190 , pp. 927-940
    • Craige, B.1    Tsao, C.C.2    Diener, D.R.3    Hou, Y.4    Lechtreck, K.F.5    Rosenbaum, J.L.6    Witman, G.B.7
  • 4
    • 78149296423 scopus 로고    scopus 로고
    • CEP290, a gene with many faces: Mutation overview and presentation of CEP290base
    • Coppieters, F.; Lefever, S.; Leroy, B.P.; de Baere, E. CEP290, a gene with many faces: Mutation overview and presentation of CEP290base. Hum. Mutat. 2010, 31, 1097–1108.
    • (2010) Hum. Mutat , vol.31 , pp. 1097-1108
    • Coppieters, F.1    Lefever, S.2    Leroy, B.P.3    De Baere, E.4
  • 10
    • 0035875551 scopus 로고    scopus 로고
    • Alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions
    • Thanaraj, T.A.; Clark, F. Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions. Nucleic Acids Res. 2001, 29, 2581–2593.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2581-2593
    • Thanaraj, T.A.1    Clark, F.2    Human, G.-A.3
  • 12
    • 29144512262 scopus 로고    scopus 로고
    • Rase: Recognition of alternatively spliced exons in C
    • Ratsch, G.; Sonnenburg, S.; Scholkopf, B. Rase: Recognition of alternatively spliced exons in C. Elegans. Bioinformatics 2005, 21, i369–i377.
    • (2005) Elegans. Bioinformatics , vol.21 , pp. i369-i377
    • Ratsch, G.1    Sonnenburg, S.2    Scholkopf, B.3
  • 13
    • 0037062982 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing and proteome expansion in metazoans
    • Maniatis, T.; Tasic, B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 2002, 418, 236–243.
    • (2002) Nature , vol.418 , pp. 236-243
    • Maniatis, T.1    Tasic, B.2
  • 14
    • 84873022115 scopus 로고    scopus 로고
    • Pick one, but be quick: 5' Splice sites and the problems of too many choices
    • Roca, X.; Krainer, A.R.; Eperon, I.C. Pick one, but be quick: 5' Splice sites and the problems of too many choices. Genes Dev. 2013, 27, 129–144.
    • (2013) Genes Dev , vol.27 , pp. 129-144
    • Roca, X.1    Krainer, A.R.2    Eperon, I.C.3
  • 15
    • 84880152075 scopus 로고    scopus 로고
    • Alternative splicing and retinal degeneration
    • Liu, M.M.; Zack, D.J. Alternative splicing and retinal degeneration. Clin. Genet. 2013, 84, 142–149.
    • (2013) Clin. Genet , vol.84 , pp. 142-149
    • Liu, M.M.1    Zack, D.J.2
  • 16
    • 84892377709 scopus 로고    scopus 로고
    • Unexpected CEP290 mRNA splicing in a humanized knock-in mouse model for leber congenital amaurosis
    • Garanto, A.; van Beersum, S.E.; Peters, T.A.; Roepman, R.; Cremers, F.P.; Collin, R.W. Unexpected CEP290 mRNA splicing in a humanized knock-in mouse model for leber congenital amaurosis. PLoS One 2013, 8, e79369.
    • (2013) Plos One , vol.8
    • Garanto, A.1    Van Beersum, S.E.2    Peters, T.A.3    Roepman, R.4    Cremers, F.P.5    Collin, R.W.6
  • 18
    • 19744368709 scopus 로고    scopus 로고
    • Identification of novel murine- and human-specific RPGRIP1 splice variants with distinct expression profiles and subcellular localization
    • Lu, X.; Ferreira, P.A. Identification of novel murine- and human-specific RPGRIP1 splice variants with distinct expression profiles and subcellular localization. Investig. Ophthalmol. Vis. Sci. 2005, 46, 1882–1890.
    • (2005) Nvestig. Ophthalmol. Vis. Sci , vol.46 , pp. 1882-1890
    • Lu, X.1    Ferreira, P.A.2
  • 19
    • 0041760905 scopus 로고    scopus 로고
    • Species-specific splicing and expression of angiotensin converting enzyme
    • Tian, X.L.; Paul, M. Species-specific splicing and expression of angiotensin converting enzyme. Biochem. Pharmacol. 2003, 66, 1037–1044.
    • (2003) Biochem. Pharmacol , vol.66 , pp. 1037-1044
    • Tian, X.L.1    Paul, M.2
  • 20
    • 84880181531 scopus 로고    scopus 로고
    • Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 mb of novel transcribed sequence via significant alternative splicing and novel genes
    • Farkas, M.H.; Grant, G.R.; White, J.A.; Sousa, M.E.; Consugar, M.B.; Pierce, E.A. Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 mb of novel transcribed sequence via significant alternative splicing and novel genes. BMC Genomics 2013, doi:10.1186/1471-2164-14-486.
    • (2013) BMC Genomics
    • Farkas, M.H.1    Grant, G.R.2    White, J.A.3    Sousa, M.E.4    Consugar, M.B.5    Pierce, E.A.6
  • 22
    • 74549177530 scopus 로고    scopus 로고
    • Characterization of the transcripts and protein isoforms for cytoplasmic polyadenylation element binding protein-3 (CPEB3) in the mouse retina
    • Wang, X.P.; Cooper, N.G. Characterization of the transcripts and protein isoforms for cytoplasmic polyadenylation element binding protein-3 (CPEB3) in the mouse retina. BMC Mol. Biol. 2009, doi:10.1186/1471-2199-10-109.
    • (2009) BMC Mol. Biol
    • Wang, X.P.1    Cooper, N.G.2
  • 23
    • 84855187277 scopus 로고    scopus 로고
    • Genome-wide transcriptome analysis in murine neural retina using high-throughput RNA sequencing
    • Gamsiz, E.D.; Ouyang, Q.; Schmidt, M.; Nagpal, S.; Morrow, E.M. Genome-wide transcriptome analysis in murine neural retina using high-throughput RNA sequencing. Genomics 2012, 99, 44–51.
    • (2012) Genomics , vol.99 , pp. 44-51
    • Gamsiz, E.D.1    Ouyang, Q.2    Schmidt, M.3    Nagpal, S.4    Morrow, E.M.5
  • 24
    • 84901431283 scopus 로고    scopus 로고
    • Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity
    • Chen, L.; Bush, S.J.; Tovar-Corona, J.M.; Castillo-Morales, A.; Urrutia, A.O. Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity. Mol. Biol. Evol. 2014, 31, 1402–1413.
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 1402-1413
    • Chen, L.1    Bush, S.J.2    Tovar-Corona, J.M.3    Castillo-Morales, A.4    Urrutia, A.O.5
  • 25
    • 33748770921 scopus 로고    scopus 로고
    • Bioinformatics of alternative splicing and its regulation
    • Florea, L. Bioinformatics of alternative splicing and its regulation. Brief. Bioinform. 2006, 7, 55–69.
    • (2006) Brief. Bioinform , vol.7 , pp. 55-69
    • Florea, L.1
  • 26
    • 84925287013 scopus 로고    scopus 로고
    • Differential evolution of signal-responsive RNA elements and upstream factors that control alternative splicing
    • Xie, J. Differential evolution of signal-responsive RNA elements and upstream factors that control alternative splicing. Cell Mol. Life Sci. 2014, 71, 4347–4360.
    • (2014) Cell Mol. Life Sci , vol.71 , pp. 4347-4360
    • Xie, J.1
  • 27
    • 20444470310 scopus 로고    scopus 로고
    • Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation
    • Kol, G.; Lev-Maor, G.; Ast, G. Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation. Hum. Mol. Genet. 2005, 14, 1559–1568.
    • (2005) Hum. Mol. Genet , vol.14 , pp. 1559-1568
    • Kol, G.1    Lev-Maor, G.2    Ast, G.3
  • 28
    • 77957873997 scopus 로고    scopus 로고
    • A humanized SMN gene containing the SMN2 nucleotide alteration in exon 7 mimics SMN2 splicing and the SMA disease phenotype
    • Gladman, J.T.; Bebee, T.W.; Edwards, C.; Wang, X.; Sahenk, Z.; Rich, M.M.; Chandler, D.S. A humanized SMN gene containing the SMN2 nucleotide alteration in exon 7 mimics SMN2 splicing and the SMA disease phenotype. Hum. Mol. Genet. 2010, 19, 4239–4252.
    • (2010) Hum. Mol. Genet , vol.19 , pp. 4239-4252
    • Gladman, J.T.1    Bebee, T.W.2    Edwards, C.3    Wang, X.4    Sahenk, Z.5    Rich, M.M.6    Chandler, D.S.7
  • 31
    • 0041377852 scopus 로고    scopus 로고
    • Aberrant splicing induced by missense mutations in BRCA1: Clues from a humanized mouse model
    • Yang, Y.; Swaminathan, S.; Martin, B.K.; Sharan, S.K. Aberrant splicing induced by missense mutations in BRCA1: Clues from a humanized mouse model. Hum. Mol. Genet. 2003, 12, 2121–2131.
    • (2003) Hum. Mol. Genet , vol.12 , pp. 2121-2131
    • Yang, Y.1    Swaminathan, S.2    Martin, B.K.3    Sharan, S.K.4
  • 32
    • 84880282232 scopus 로고    scopus 로고
    • Phosphatidylserine increases IKBKAP levels in a humanized knock-in IKBKAP mouse model
    • Bochner, R.; Ziv, Y.; Zeevi, D.; Donyo, M.; Abraham, L.; Ashery-Padan, R.; Ast, G. Phosphatidylserine increases IKBKAP levels in a humanized knock-in IKBKAP mouse model. Hum. Mol. Genet. 2013, 22, 2785–2794.
    • (2013) Hum. Mol. Genet , vol.22 , pp. 2785-2794
    • Bochner, R.1    Ziv, Y.2    Zeevi, D.3    Donyo, M.4    Abraham, L.5    Ashery-Padan, R.6    Ast, G.7
  • 35
    • 84886952635 scopus 로고    scopus 로고
    • accessed on 25 January 2015
    • Rasband, W.S. Image J software. Available online: http://imagej.nih.gov/ij/ (accessed on 25 January 2015).
    • Image J Software
    • Rasband, W.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.