-
1
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
PMID: 16141072
-
Carninci P, Kasukawa T, Katayama S, Gough J, Frith M, Maeda N, et al. The transcriptional landscape of the mammalian genome. Science. 2005; 309 (5740):1559-63. PMID: 16141072
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.5
Maeda, N.6
-
2
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
PMID: 16141073
-
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, et al. Antisense transcription in the mammalian transcriptome. Science. 2005; 309 (5740):1564-6. PMID: 16141073
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
-
3
-
-
0019960361
-
Further evidence that the majority of primary nuclear RNA transcripts in mammalian cells do not contribute to mRNA
-
PMID: 14582165
-
Salditt-Georgieff M, Darnell J. Further evidence that the majority of primary nuclear RNA transcripts in mammalian cells do not contribute to mRNA. Molecular and cellular biology. 1982; 2(6):701-7. PMID: 14582165
-
(1982)
Molecular and Cellular Biology
, vol.2
, Issue.6
, pp. 701-707
-
-
Salditt-Georgieff, M.1
Darnell, J.2
-
4
-
-
41349116135
-
The eukaryotic genome as an RNA machine
-
PMID: 18369136
-
Amaral PP, Dinger ME, Mercer TR, Mattick JS. The eukaryotic genome as an RNA machine. Science. 2008; 319 (5871):1787-9. doi: 10.1126/science.1155472 PMID: 18369136
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1787-1789
-
-
Amaral, P.P.1
Dinger, M.E.2
Mercer, T.R.3
Mattick, J.S.4
-
5
-
-
0016825478
-
Chromatin-associated RNA content of heterochromatinandeuchromatin
-
PMID: 1186664
-
Paul IJ, Duerksen JD. Chromatin-associated RNA content of heterochromatinandeuchromatin. Molecular and cellular biochemistry. 1975; 9(1):9-16. PMID: 1186664
-
(1975)
Molecular and Cellular Biochemistry
, vol.9
, Issue.1
, pp. 9-16
-
-
Paul, I.J.1
Duerksen, J.D.2
-
6
-
-
84898760716
-
A long-term demasculinization of X-linked intergenic noncoding RNAs in drosophila melanogaster
-
PMID: 24407956
-
Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, et al. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 2014; 24(4):629-38. doi: 10.1101/gr.165837.113 PMID: 24407956
-
(2014)
Genome Res.
, vol.24
, Issue.4
, pp. 629-638
-
-
Gao, G.1
Vibranovski, M.D.2
Zhang, L.3
Li, Z.4
Liu, M.5
Zhang, Y.E.6
-
7
-
-
84879671055
-
Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs
-
PMID: 23818866
-
Hangauer MJ, Vaughn IW, McManus MT. Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs. PLoS genetics. 2013; 9(6): e1003569. doi: 10.1371/journal.pgen.1003569 PMID: 23818866
-
(2013)
PLoS Genetics
, vol.9
, Issue.6
-
-
Hangauer, M.J.1
Vaughn, I.W.2
McManus, M.T.3
-
8
-
-
84872974268
-
Potential roles of microRNAsin regulating long intergenic noncoding RNAs
-
PMID: 23369519
-
Juan L, Wang G, Radovich M, Schneider BP, Clare SE, Wang Y, et al. Potential roles of microRNAsin regulating long intergenic noncoding RNAs. BMC medical genomics. 2013; 6 Suppl 1:S7. doi: 10.1186/1755-8794-6-S1-S7 PMID: 23369519
-
(2013)
BMC Medical Genomics
, vol.6
, pp. S7
-
-
Juan, L.1
Wang, G.2
Radovich, M.3
Schneider, B.P.4
Clare, S.E.5
Wang, Y.6
-
9
-
-
84888232130
-
Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
-
PMID: 24289259
-
Marques AC, Hughes J, Graham B, Kowalczyk MS, Higgs DR, Ponting CP. Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome Biol. 2013; 14(11):R131. doi: 10.1186/gb-2013-14-11-r131 PMID: 24289259
-
(2013)
Genome Biol.
, vol.14
, Issue.11
, pp. R131
-
-
Marques, A.C.1
Hughes, J.2
Graham, B.3
Kowalczyk, M.S.4
Higgs, D.R.5
Ponting, C.P.6
-
10
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
PMID: 21925379
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell. 2011; 43(6):904-14. doi: 10.1016/j.molcel.2011.08.018 PMID: 21925379
-
(2011)
Mol Cell
, vol.43
, Issue.6
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
11
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
PMID: 19182780
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009; 458 (7235):223-7. doi: 10.1038/nature07672 PMID: 19182780
-
(2009)
Nature
, vol.458
, Issue.7235
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
-
12
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression inthep53 response
-
PMID: 20673990
-
Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression inthep53 response. Cell. 2010; 142 (3):409-19. doi: 10.1016/j.cell.2010.06.040 PMID: 20673990
-
(2010)
Cell
, vol.142
, Issue.3
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
-
13
-
-
78649467088
-
Large intergenic non-coding RNA-ror modulates reprogramming of human induced pluripotent stem cells
-
PMID: 21057500
-
Loewer S, Cabili MN, Guttman M, Loh YH, Thomas K, Park IH, et al. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet. 2010; 42 (12):1113-7. doi: 10.1038/ng.710 PMID: 21057500
-
(2010)
Nat Genet.
, vol.42
, Issue.12
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
-
14
-
-
84881478367
-
Along noncoding RNA mediates both activation and repression of immune response genes
-
PMID: 23907535
-
Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, et al. Along noncoding RNA mediates both activation and repression of immune response genes. Science. 2013; 341 (6147):789-92. doi: 10.1126/science.1240925 PMID: 23907535
-
(2013)
Science
, vol.341
, Issue.6147
, pp. 789-792
-
-
Carpenter, S.1
Aiello, D.2
Atianand, M.K.3
Ricci, E.P.4
Gandhi, P.5
Hall, L.L.6
-
15
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
PMID: 19571010
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences of the United States of America. 2009; 106(28):11667-72. doi: 10.1073/pnas.0904715106 PMID: 19571010
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, Issue.28
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
-
16
-
-
84862822882
-
Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing
-
PMID: 22374175
-
Li T, Wang S, Wu R, Zhou X, Zhu D, Zhang Y. Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing. Genomics. 2012; 99(5):292-8. doi: 10.1016/j.ygeno.2012.02.003 PMID: 22374175
-
(2012)
Genomics
, vol.99
, Issue.5
, pp. 292-298
-
-
Li, T.1
Wang, S.2
Wu, R.3
Zhou, X.4
Zhu, D.5
Zhang, Y.6
-
17
-
-
84864098110
-
Identification and properties of 1,119 candidate lincRNAloci in the drosophilamelanogaster genome
-
PMID: 22403033
-
Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, et al. Identification and properties of 1,119 candidate lincRNAloci in the Drosophilamelanogaster genome. Genome Biol Evol. 2012; 4 (4):427-42. doi: 10.1093/gbe/evs020 PMID: 22403033
-
(2012)
Genome Biol EVol.
, vol.4
, Issue.4
, pp. 427-442
-
-
Young, R.S.1
Marques, A.C.2
Tibbit, C.3
Haerty, W.4
Bassett, A.R.5
Liu, J.L.6
-
18
-
-
84902950819
-
Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs
-
PMID: 24891613
-
Zhou ZY, Li AM, Adeola AC, Liu YH, Irwin DM, Xie HB, et al. Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs. Genome Biol Evol. 2014; 6(6):1387-92. doi: 10.1093/gbe/evu113 PMID: 24891613
-
(2014)
Genome Biol EVol.
, vol.6
, Issue.6
, pp. 1387-1392
-
-
Zhou, Z.Y.1
Li, A.M.2
Adeola, A.C.3
Liu, Y.H.4
Irwin, D.M.5
Xie, H.B.6
-
19
-
-
84871910383
-
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in arabidopsis
-
PMID: 23136377
-
Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, et al. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. The Plant cell. 2012; 24(11):4333-45. doi: 10.1105/tpc.112.102855 PMID: 23136377
-
(2012)
The Plant Cell
, vol.24
, Issue.11
, pp. 4333-4345
-
-
Liu, J.1
Jung, C.2
Xu, J.3
Wang, H.4
Deng, S.5
Bernad, L.6
-
20
-
-
84884901660
-
Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing
-
PMID: 23943091
-
Qi X, Xie S, Liu Y, Yi F, Yu J. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. Plant Mol Biol. 2013; 83(4-5):459-73. doi: 10.1007/s11103-013-0112-6 PMID: 23943091
-
(2013)
Plant Mol Biol.
, vol.83
, Issue.4-5
, pp. 459-473
-
-
Qi, X.1
Xie, S.2
Liu, Y.3
Yi, F.4
Yu, J.5
-
21
-
-
84865079670
-
Computational identification and functional predictions of long noncoding RNA in zeamays
-
PMID: 22916204
-
Boerner S, McGinnis KM. Computational identification and functional predictions of long noncoding RNA in Zeamays. PLoS One. 2012; 7(8):e43047. doi: 10.1371/journal.pone.0043047 PMID: 22916204
-
(2012)
PLoS ONE
, vol.7
, Issue.8
-
-
Boerner, S.1
McGinnis, K.M.2
-
22
-
-
84899045771
-
Genome-wide discovery and characterization of maize long non-coding RNAs
-
PMID: 24576388
-
Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome biology. 2014; 15(2):R40. doi: 10.1186/gb-2014-15-2-r40 PMID: 24576388
-
(2014)
Genome Biology
, vol.15
, Issue.2
, pp. R40
-
-
Li, L.1
Eichten, S.R.2
Shimizu, R.3
Petsch, K.4
Yeh, C.T.5
Wu, W.6
-
23
-
-
84907388006
-
Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in populus trichocarpa
-
PMID: 24948679
-
Shuai P, Liang D, Tang S, Zhang Z, Ye CY, Su Y, et al. Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa. J Exp Bot. 2014; 65 (17):4975-83. doi: 10.1093/jxb/eru256 PMID: 24948679
-
(2014)
J Exp Bot.
, vol.65
, Issue.17
, pp. 4975-4983
-
-
Shuai, P.1
Liang, D.2
Tang, S.3
Zhang, Z.4
Ye, C.Y.5
Su, Y.6
-
24
-
-
2942657813
-
Sex-determining mechanisms in land plants
-
PMID: 15084718
-
Tanurdzic M, Banks JA. Sex-determining mechanisms in land plants. The Plant cell. 2004; 16 Suppl: S61-71. PMID: 15084718
-
(2004)
The Plant Cell
, vol.16
, pp. S61-71
-
-
Tanurdzic, M.1
Banks, J.A.2
-
25
-
-
0342804913
-
Cell division and expansion in the cucumber fruit
-
Marcelis LFM, Baan-Hofman-Eijer LR. Cell division and expansion in the cucumber fruit. J HorticSci. 1993; 68(5):665-72.
-
(1993)
J HorticSci.
, vol.68
, Issue.5
, pp. 665-672
-
-
Marcelis, L.F.M.1
Baan-Hofman-Eijer, L.R.2
-
26
-
-
0030445724
-
Noncoding RNA for CR20, a cytokinin-repressedgene of cucumber
-
PMID: 8980532
-
Teramoto H, Toyama T, Takeba G, Tsuji H. Noncoding RNA for CR20, a cytokinin-repressedgene of cucumber. Plant Mol Biol. 1996; 32(5):797-808. PMID: 8980532
-
(1996)
Plant Mol Biol.
, vol.32
, Issue.5
, pp. 797-808
-
-
Teramoto, H.1
Toyama, T.2
Takeba, G.3
Tsuji, H.4
-
27
-
-
33644781949
-
Isolation and characterization of cDNA clones expressed under male sex expression conditions in a monoecious cucumber plant (Cucumis sativus L. Cv. Winter long)
-
Cho J, Koo DH, Nam YW, Han CT, Lim HT, Bang JW, et al. Isolation and characterization of cDNA clones expressed under male sex expression conditions in a monoecious cucumber plant (Cucumis sativus L. cv. Winter Long). Euphytica. 2005; 146(3):271-81.
-
(2005)
Euphytica
, vol.146
, Issue.3
, pp. 271-281
-
-
Cho, J.1
Koo, D.H.2
Nam, Y.W.3
Han, C.T.4
Lim, H.T.5
Bang, J.W.6
-
28
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007; 35(suppl 2):W345-W9.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W345-W9
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
Wei, L.6
-
29
-
-
0037252684
-
Rfam: An RNA family database
-
PMID: 12520045
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Res. 2003; 31(1):439-41. PMID: 12520045
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.1
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
30
-
-
20144376345
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
-
PMID: 15388519
-
Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics. 2005; 21(5):650-9. PMID: 15388519
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 650-659
-
-
Yanai, I.1
Benjamin, H.2
Shmoish, M.3
Chalifa-Caspi, V.4
Shklar, M.5
Ophir, R.6
-
31
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
PMID: 17643101
-
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, et al. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet. 2007; 39(8):1033-7. PMID: 17643101
-
(2007)
Nat Genet.
, vol.39
, Issue.8
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
-
32
-
-
84888360015
-
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity
-
PMID: 24141363
-
Qi J, Liu X, Shen D, Miao H, Xie B, Li X, et al. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity. Nat Genet. 2013; 45(12):1510-5. doi: 10.1038/ng.2801 PMID: 24141363
-
(2013)
Nat Genet.
, vol.45
, Issue.12
, pp. 1510-1515
-
-
Qi, J.1
Liu, X.2
Shen, D.3
Miao, H.4
Xie, B.5
Li, X.6
-
33
-
-
81755161589
-
Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins
-
PMID: 22028365
-
Rackham O, Shearwood AM, Mercer TR, Davies SM, Mattick JS, Filipovska A. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. RNA. 2011; 17(12):2085-93. doi: 10.1261/rna.029405.111 PMID: 22028365
-
(2011)
RNA
, vol.17
, Issue.12
, pp. 2085-2093
-
-
Rackham, O.1
Shearwood, A.M.2
Mercer, T.R.3
Davies, S.M.4
Mattick, J.S.5
Filipovska, A.6
-
34
-
-
70649085835
-
The genome of the cucumber, cucumis sativus L
-
PMID: 19881527
-
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, et al. The genome of the cucumber, Cucumis sativus L. Nat Genet. 2009; 41(12):1275-81. doi: 10.1038/ng.475 PMID: 19881527
-
(2009)
Nat Genet.
, vol.41
, Issue.12
, pp. 1275-1281
-
-
Huang, S.1
Li, R.2
Zhang, Z.3
Li, L.4
Gu, X.5
Fan, W.6
-
35
-
-
77954920576
-
Transcriptional profiling of rapidly growing cucumber fruit by 454-pyrosequencing analysis
-
Ando K, Grumet R. Transcriptional profiling of rapidly growing cucumber fruit by 454-pyrosequencing analysis. J Am Soc Hortic Sci. 2010; 135(4):291-302.
-
(2010)
J Am Soc Hortic Sci.
, vol.135
, Issue.4
, pp. 291-302
-
-
Ando, K.1
Grumet, R.2
-
36
-
-
80055116048
-
RNA-seq improves annotation of protein-coding genes in the cucumber genome
-
Li Z, Zhang Z, Yan P, Huang S, Fei Z, Lin K. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC genomics. 2011; 12(1):540.
-
(2011)
BMC Genomics
, vol.12
, Issue.1
, pp. 540
-
-
Li, Z.1
Zhang, Z.2
Yan, P.3
Huang, S.4
Fei, Z.5
Lin, K.6
-
37
-
-
79960264362
-
Full-length transcriptome assembly from RNA-seq data without a reference genome
-
PMID: 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011; 29(7):644-52. doi: 10.1038/nbt.1883 PMID: 21572440
-
(2011)
Nat Biotechnol.
, vol.29
, Issue.7
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
-
38
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
PMID: 11932250
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome research. 2002; 12(4):656-64. PMID: 11932250
-
(2002)
Genome Research
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
39
-
-
77949601825
-
CD-HIT suite: A web server for clustering and comparing biological sequences
-
PMID: 20053844
-
Huang Y, Niu B, Gao Y, Fu L, Li W. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics. 2010; 26(5):680-2. doi: 10.1093/bioinformatics/btq003 PMID: 20053844
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
40
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215(3):403-10. PMID: 2231712
-
(1990)
J Mol Biol.
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
41
-
-
62349130698
-
Ultrafastand memory-efficient alignment of short DNA sequences to the human genome
-
PMID: 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafastand memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009; 10(3):R25. doi: 10.1186/gb-2009-10-3-r25 PMID: 19261174
-
(2009)
Genome Biol.
, vol.10
, Issue.3
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
42
-
-
84859131446
-
A combined approach of high-throughput sequencing and degradome analysis reveals tissue specific expression of microRNAs and their targets in cucumber
-
PMID: 22479356
-
Mao W, Li Z, Xia X, Li Y, Yu J. A combined approach of high-throughput sequencing and degradome analysis reveals tissue specific expression of microRNAs and their targets in cucumber. PloS one. 2012; 7(3):e33040. doi: 10.1371/journal.pone.0033040 PMID: 22479356
-
(2012)
PloS One
, vol.7
, Issue.3
-
-
Mao, W.1
Li, Z.2
Xia, X.3
Li, Y.4
Yu, J.5
-
43
-
-
84864491712
-
PsRobot: A web-based plant small RNA meta-analysis toolbox
-
(Web Server issue) PMID: 22693224
-
Wu HJ, Ma YK, Chen T, Wang M, Wang XJ. PsRobot: a web-based plant small RNA meta-analysis toolbox. Nucleic Acids Res. 2012; 40(Web Server issue):W22-8. doi: 10.1093/nar/gks554 PMID: 22693224
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W22-8
-
-
Wu, H.J.1
Ma, Y.K.2
Chen, T.3
Wang, M.4
Wang, X.J.5
-
44
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
-
PMID: 21247874
-
Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, et al. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res. 2011; 39(9):3864-78. doi: 10.1093/nar/gkq1348 PMID: 21247874
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.9
, pp. 3864-3878
-
-
Liao, Q.1
Liu, C.2
Yuan, X.3
Kang, S.4
Miao, R.5
Xiao, H.6
-
45
-
-
60549111634
-
WGCNA: An R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC bioinformatics. 2008; 9(1):559.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
46
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
PMID: 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome research. 2003; 13 (11):2498-504. PMID: 14597658
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
-
48
-
-
33749156386
-
Genome-wide DNA polymorphism analyses using VariScan
-
PMID: 16968531
-
Hutter S, Vilella AJ, Rozas J. Genome-wide DNA polymorphism analyses using VariScan. BMC Bioinformatics. 2006; 7:409. PMID: 16968531
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 409
-
-
Hutter, S.1
Vilella, A.J.2
Rozas, J.3
-
49
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
PMID: 19346325
-
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009; 25(11):1451-2. doi: 10.1093/bioinformatics/btp187 PMID: 19346325
-
(2009)
Bioinformatics
, vol.25
, Issue.11
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
|