Fast Super-Resolution Imaging with Ultra-High Labeling Density Achieved by Joint Tagging Super-Resolution Optical Fluctuation Imaging

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Zeng, Zhiping ^a   Chen, Xuanze ^a   Wang, Hening ^a   Huang, Ning ^a   Shan, Chunyan ^a   Zhang, Hao ^a   Teng, Junlin ^a   Xi, Peng ^a  

^a PEKING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84925589543     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep08359     Document Type: Article

References (47)

1. Leung, B. O. & Chou, K. C. Review of super-resolution fluorescence microscopy for biology. Appl. Spectrosc. 65, 967-980 (2011).
2. Bentolila, L. A., Ebenstein, Y. & Weiss, S. Quantum dots for in vivo small-animal imaging. J. Nucl. Med. 50, 493-496 (2009).
3. Pathak, S., Cao, E., Davidson, M. C., Jin, S. & Silva, G. A. Quantum dot applications to neuroscience: new tools for probing neurons and glia. The J. Neurosci. 26, 1893-1895 (2006).
4. Smith, A.M., Gao, X. & Nie, S. Quantum Dot Nanocrystals for In Vivo Molecular and Cellular Imaging. Photochem. Photobiol. 80, 377-385 (2004).
5. Xu, Z. & Cotlet, M. Photoluminenscence Blinking Dynamics of Colloidal Quantum Dots in the Presence of Controlled External Electron Traps. Small 8, 253-258 (2012).
6. Gómez, D. E., van Embden, J., Jasieniak, J., Smith, T. A. & Mulvaney, P. Blinking and surface chemistry of single CdSe nanocrystals. Small 2, 204-208 (2006).
7. Frantsuzov, P., Kuno, M., Janko, B. & Marcus, R. A. Universal emission intermittency in quantum dots, nanorods and nanowires. Nat. Phys. 4, 519-522 (2008).
8. Hell, S. W. in Single Molecule Spectroscopy in Chemistry, Physics and Biology 365-398 (Springer, Heidelberg; 2010).
9. Hell, S. W. &Wichmann, J. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt. Lett. 19, 780-782 (1994).
10. Liu, Y. et al. Achieving l/10 Resolution CWSTED Nanoscopy with a Ti: Sapphire Oscillator. PLoS One 7, e40003 (2012).
11. Yang, X. et al. Sub-diffraction imaging of nitrogen-vacancy centers in diamond by stimulated emission depletion and structured illumination. R. Soc. Chem. Adv. 4, 11305-11310 (2014).
12. Gustafsson, M. G. Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution. Proc. Natl. Acad. Sci. 102, 13081-13086 (2005).
13. Hess, S. T., Girirajan, T. P. & Mason, M. D. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J. 91, 4258-4272 (2006).
14. Rust, M. J., Bates, M. & Zhuang, X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3, 793-796 (2006).
15. Dertinger, T., Colyer, R., Iyer, G.,Weiss, S. & Enderlein, J. Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI). Proc. Natl. Acad. Sci. 106, 22287-22292 (2009).
16. Dertinger, T. et al. in Nano-Biotechnology for Biomedical and Diagnostic Research 17-21 (Springer, Dordrecht; 2012).
17. Geissbuehler, S., Dellagiacoma, C. & Lasser, T. Comparison between SOFI and STORM. Biomed. Opt. Express 2, 408-420 (2011).
18. Sengupta, P. & Lippincott-Schwartz, J. Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis. Bioessays 34, 396-405 (2012).
19. Mukamel, E. A. & Schnitzer, M. J. Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Phys. Rev. Lett. 109, 168102 (2012).
20. Dedecker, P., Duwé, S., Neely, R. K. & Zhang, J. Localizer: fast, accurate, opensource, and modular software package for superresolution microscopy. J. Biomed. Opt. 17, 126008-126008 (2012).
21. Ji, N., Shroff, H., Zhong, H. & Betzig, E. Advances in the speed and resolution of light microscopy. Curr. Opin. Neurobiol. 18, 605-616 (2008).
22. Lemmer, P. et al. SPDM: light microscopy with single-molecule resolution at the nanoscale. Appl. Phys. B 93, 1-12 (2008).
23. Cremer, C. et al. Superresolution imaging of biological nanostructures by spectral precision distance microscopy. Biotechnol. J. 6, 1037-1051 (2011).
24. Lemmer, P. et al. Using conventional fluorescent markers for far-field fluorescence localization nanoscopy allows resolution in the 10-nm range. J. Microsc. 235, 163-171 (2009).
25. Cutler, P. J. et al. Multi-Color Quantum Dot Tracking Using a High-Speed Hyperspectral Line-Scanning Microscope. PLoS One 8, e64320 (2013).
26. van Dijk, T., Mayerich, D., Bhargava, R. & Carney, P. S. Rapid spectral-domain localization. Opt. Express 21, 12822-12830 (2013).
27. Han, M., Gao, X., Su, J. Z. & Nie, S. Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules. Nat. Biotechnol. 19, 631-635 (2001).
28. Arganda-Carreras, I., Fernández-González, R., Muñoz-Barrutia, A. & Ortiz-De-Solorzano, C. 3D reconstruction of histological sections: Application to mammary gland tissue. Microsc. Res. Tech. 73, 1019-1029 (2010).
29. Lee, T.-C., Kashyap, R. L. & Chu, C.-N. Building skeleton models via 3-D medial surface axis thinning algorithms. Graph. Model. Im. Proc. 56, 462-478 (1994).
30. Moeyaert, B. et al. Green-to-Red Photoconvertible Dronpa Mutant for Multimodal Super-resolution Fluorescence Microscopy. ACS nano 8, 1664-1673 (2014).
31. Dertinger, T. et al. Advances in superresolution optical fluctuation imaging (SOFI). Q. Rev. Biophys. 46, 210-221 (2013).
32. Hafi, N. et al. Fluorescence nanoscopy by polarization modulation and polarization angle narrowing. Nat. Methods 11, 579-584 (2014).
33. Lu, Y. et al. Tunable lifetime multiplexing using luminescent nanocrystals. Nat. Photonics 8, 32-36 (2014).
34. Watanabe, T. M., Fukui, S., Jin, T., Fujii, F.&Yanagida, T. Real-time nanoscopy by using blinking enhanced quantum dots. Biophys. J. 99, L50-L52 (2010).
35. Betzig, E. et al. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution. Science 313, 1642-1645 (2006).
36. Zhu, L., Zhang, W., Elnatan, D. & Huang, B. Faster STORM using compressed sensing. Nat. Methods 9, 721-723 (2012).
37. Dertinger, T., Colyer, R., Vogel, R., Enderlein, J. &Weiss, S. Achieving increased resolution and more pixels with Superresolution Optical Fluctuation Imaging (SOFI). Opt. Express 18, 18875-18885 (2010).
38. Cho, S. et al. Simple super-resolution live-cell imaging based on diffusion-assisted Forster resonance energy transfer. Sci. Rep. 3, 1208 (2013).
39. Burnette, D. T., Sengupta, P., Dai, Y., Lippincott-Schwartz, J. & Kachar, B. Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules. Proc. Natl. Acad. Sci. 108, 21081-21086 (2011).
40. Munck, S. et al. Sub-diffraction imaging on standard microscopes through photobleaching microscopy with non-linear processing. J. Cell Sci. 125, 2257-2266 (2012).
41. Betzig, E. Proposed method for molecular optical imaging. Opt. Lett. 20, 237-239 (1995).
42. Guizar-Sicairos, M., Thurman, S. T. & Fienup, J. R. Efficient subpixel image registration algorithms. Opt. Lett. 33, 156-158 (2008).
43. Testa, I. et al. Multicolor fluorescence nanoscopy in fixed and living cells by exciting conventional fluorophores with a single wavelength. Biophys. J. 99, 2686-2694 (2010).
44. Geissbuehler, S. et al. Mapping molecular statistics with balanced super-resolution optical fluctuation imaging (bSOFI). Opt. Nanosc. 1, 1-7 (2012).
45. Otsu, N. A threshold selection method from gray-level histograms. Autom. 11, 23-27 (1975).
46. Gonzalez, R. C. & Woods, R. E. Digital image processing 3rd edition, (Pearson Education, New York; 2010).
47. Chen, X., Zeng, Z., Wang, H. & Xi, P.Three dimensional multimodal subdiffraction imaging with spinning-disk confocal microscopy using blinking/fluctuation probes. Nano Res., (in press) doi:10.1007/s12274-015-0736-8 (2015).