Double-stranded RNA in the biological control of grain aphid (Sitobion avenae F.)

Functional and Integrative Genomics

Volumn 15, Issue 2, 2015, Pages 211-223

  Wang, Dahai ^a,b   Liu, Qi ^c   Li, Xia ^d   Sun, Yongwei ^a   Wang, Hui ^a   Xia, Lanqin ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b BEIJING JIAOTONG UNIVERSITY   (China)

^c WENZHOU MEDICAL UNIVERSITY   (China)

^d INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Aphid control; Grain aphid (Sitobion avenae F.); RNA interference (RNAi); Transcriptome; Wheat (Triticum aestivum L.)

Indexed keywords

DOUBLE STRANDED RNA; MICRORNA; RNA BINDING PROTEIN; RNA INDUCED SILENCING COMPLEX; SID1 PROTEIN; TAR RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

ADULT; APHIDIDAE; ARTICLE; ARTIFICIAL DIET; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PYROSEQUENCING; RNA INTERFERENCE; SITOBION AVENAE; ANIMAL; APHID; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SEQUENCE ANALYSIS; WHEAT;

ANIMALS; APHIDS; GENE EXPRESSION PROFILING; MICRORNAS; RNA INTERFERENCE; RNA, DOUBLE-STRANDED; SEQUENCE ANALYSIS; TRITICUM;

EID: 84925497938     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-014-0424-x     Document Type: Article

References (61)

1. Aqueel MA, Leather SR (2011) Effect of nitrogen fertilizer on the growth and survival of Rhopalosiphum padi (L.) and Sitobion avenae (F.) (Homoptera: Aphididae) on different wheat cultivars. Crop Prot 30:216–221
2. 2 affects the interactions between aphid pests and host plant flowering. Agric For Entomol 2:57–61
3. Baum JA, Bogaert T, Clinton W, Heck GR, Feldmann P, Ilagan O, Johnson S, Plaetinck G, Munyikwa T, Pleau M, Vaughn T, Roberts J (2007) Control of coleopteran insect pests through RNA interference. Nat Biotechnol 25:1322–1326
4. Bautista MA, Miyata T, Miura K, Tanaka T (2009) RNA interference-mediated knockdown of a cytochrome P450, CYP6BG1, from the diamondback moth, Plutella xylostella, reduces larval resistance to permethrin. Insect Biochem Mol Biol 39:38–46
5. Bhatia V, Bhattacharya R, Uniyal PL, Singh R, Niranjan RS (2012) Host generated siRNAs attenuate expression of serine protease Gene in Myzus persicae. PLoS One 7:e46343
6. Blackman RL, Eastop VF (1984) Aphids on the world’s crops: an identification and information guide. Wiley, New York
7. Chen YA, Lin CC, Wang CD, Wu HB, Wang PI (2007) An optimized procedure greatly improves EST vector contamination removal. BMC Genomics 8:416
8. Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WE, Wetter T, Suhai S (2004) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 14:1147–1159
9. Chou HH, Michael HH (2001) DNA sequence quality trimming and vector removal. Bioinformatics 17:1093–1104
10. Conesa A, Gotz S, García-Gómez JM, Terol J, Talón M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674–3676
11. DI Deraison C, Duportets L, Gorojankina T, Rahb Y, Jouanin L (2002) Cloning and characterization of a gut-specific cathepsin L from the aphid Aphis gossypii. Insect Mol Biol 13:265–177
12. Dzitoyeva S, Dimitrijevic N, Manev H (2001) Intra-abdominal injection of double-stranded RNA into anesthetized adult Drosophila triggers RNA interference in the central nervous system. Mol Psychiatry 6:665
13. Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9:102–114
14. Fire A, Xu S, Montgomery M, Kostas S, Driver S, Mello C (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806–811
15. Gaur RK, Krupp G (1993) Enzymatic RNA synthesis with deoxynucleoside 5′-O (1-thiotriphosphates). FEBS Lett 315:56–60
16. Huvenne H, Smagghe G (2010) Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: a review. J Insect Physiol 56:227–235
17. International Aphid Genomics Consortium (2010b) Aphid White Paper II: proposal to complete development of the aphid model. IAGC–White Paper II-FINAL VERSION-September 13th 2010.
18. International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol 8:e1000313
19. Jaubert-Possamai S, Le Trionnaire G, Bonhomme J, Christophides GK, Rispe C, Tagu D (2007) Gene knockdown by RNAi in the pea aphid Acyrthosiphon pisum. BMC Biotechnol 7:63
20. Jinek M, Doudna JA (2008) A three-dimensional view of the molecular machinery of RNA interference. Nature 457:405–412
21. Jose AM, Hunter CP (2007) Transport of sequence-specific RNA interference information between cells. Annu Rev Gene 41:305–330
22. Lassmann T, Hayashizaki Y, Daub CO (2009) TagDust—a program to eliminate artifacts from next generation sequencing data. Bioinformatics 25:2839–2840
23. Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson ACC, Tagu D (2010) AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Mol Biol 19:5–12
24. Liao Z, Jia QD, Li F, Han ZJ (2010) Identification of two piwi genes and their expression profile in honeybee, Apis mellifera. Arch Insect Biochem Physiol 74:91–102
25. −ΔΔCT method. Methods 25:402–408
26. Lynch JA, Desplan C (2006) A method for parental RNA interference in the wasp Nasonia vitripennis. Nat Protoc 1:486–494
27. Mao YB, Cai WJ, Wang JW, Hong GJ, Tao XY, Wang LJ, Huang YP, Chen XY (2007) Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat Biotechnol 25:1307–1313
28. Martín D, Maestro O, Cruz J, Mané-Padrós D, Bellés X (2006) RNAi studies reveal a conserved role for RXR in molting in the cockroach Blattella germanica. Insect Physiol 52:410–416
29. Meister G, Tuschl T (2004) Mechanisms of gene silencing by double-stranded RNA. Nature 431:343–349
30. Meyering-Vos M, Müller A (2007) A Structure of the sulfakinin cDNA and gene expression from the mediterranean field cricket Gryllus bimaculatus. Insect Mol Biol 16:445–454
31. Meyering-Vos M, Merz S, Sertkol M, Hoffmann KH (2006) Functional analysis of the allatostatin-a type gene in the cricket Gryllus bimaculatus and the armyworm Spodoptera frugiperda. Insect Biochem Mol Biol 36:492–504
32. Michel H, Behr J, Harrenga A, Kannt A (1998) Cytochrome c oxidase: structure and spectroscopy. Annu Rev Bioph Biom 27:329–356
33. Morrison WP, Peairs FB (1998) Response model concept and economic impact. Response model for an introduced pest: the Russian wheat aphid. Lanham: MD: Entomol Soc Am.
34. Mutti NS, Park Y, Reese JC, Reeck GR (2006) RNAi knockdown of a salivary transcript leading to lethality in the pea aphid, Acyrthosiphon pisum. J Insect Sci 6:1–7
35. Nakakita H, Katsumata Y, Ozawa T (1971) The effect of phosphine on respiration of rat liver mitochondria. J Biochem 69:589–593
36. Oerke EC, Dehne HW, Schönbeck F, Weber A (1994) Crop production and crop protection: estimated losses in major food and cash crops. Elsevier, Amsterdam, pp 179–296
37. Pitino M, Maffei ME, Coleman AD, Ridout CJ, Hogenhout SA (2011) Silencing of aphid genes by dsRNA feeding from plants. PLoS One 6:e25709
38. Price DR, Gatehouse JA (2008) RNAi-mediated crop protection against insects. Trends Biotechnol 26:393–400
39. Shakesby AJ, Wallace IS, Isaacs HV, Pritchard J, Roberts DM, Douglas AE (2009) A water-specific aquaporin involved in aphid osmoregulation. Insect Biochem Mol Biol 39:1–10
40. Siomi H, Siomi MC (2009) On the road to reading the RNA-interference code. Nature 457:396–404
41. Smith CM, Belay T, Stauffer C, Stary P, Kubeckova I, Starkey S (2004) Identifiaction of Russian wheat aphid (Homoptera: Aphididae) biotypes virulent to the Dn4 resistance gene. J Econ Entomol 97:112–117
42. Sternlicht MD, Werb Z (2001) How matrix metalloproteinases regulate cell behavior. Annu Rev Cell Dve Bi 17:463–516
43. Stoger E, Willianms S, Christou P, Down RE, Gatehouse JA (1999) Expression of the insecticidal lectin from snowdrop (Galanthus nivalis agglutinin; GNA) in transgenic wheat plants: effects on predation by the grain aphid Sitobion avenae. Mol Breed 5:65–73
44. Taanman JW, Williams SL (2001) Assembly of cytochrome c oxidase: what can we learn from patients with cytochrome c oxidase deficiency? Biochem Soc T 29:446–451
45. Tagu D, Klingler JP, Moya A, Simon JC (2008) Early progress in aphid genomics and consequences for plant-aphid interactions studies. Mol Plant-Microbe Interact 21(6):701–708
46. Terenius O, Papanicolaou A, Garbutt JS, Eleftherianos I, Huvenne H, Kanginakudru S, Albrechtsen M, An C, Aymeric JL, Barthel A (2011) RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design. J Insect Physiol 57:231–245
47. Tian H, Peng H, Yao Q, Chen H, Xie Q, Tang B, Zhang W (2009) Developmental control of a lepidopteran pest Spodoptera exigua by ingestion of bacteria expressing dsRNA of a non-midgut gene. PLoS One 4:e6225
48. Tomoyasu Y, Miller SC, Tomita S, Schoppmeier M, Grossmann D, Bucher G (2008) Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium. Genome Biol 9:R10
49. Turner CT, Davy MW, MacDiarmid RM, Plummer KM, Birch NP, Newcomb RD (2006) RNA interference in the light brown apple moth, Epiphyas postvittana (Walker) induced by double-stranded RNA feeding. Insect Mol Biol 15:383–391
50. Van Roessel, A.H. Brand (2004) Spreading silence with Sid. Genome Biology, 5 (2004), p. 208Wang CP, Chen Q, Luo K, Zhao HY, Zhang GS, Tlali, RM (2011) Evaluation of resistance in wheat germplasm to the aphids, Sitobion avenae based on Technique for Order Preference by Similarity to Ideal Solution TOPSIS and cluster methods. Afr J Agric Res 6: 1592–1599
51. Whangbo JS, Hunter CP (2008) Environmental RNA interference. Trends Genet 24:297–305
52. Whyard S, Singh AD, Wong S (2009) Ingested double-stranded RNAs can act as species-specific insecticides. Insect Biochem Mol Biol 39:824–832
53. Williams RW, Rubin GM (2002) ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos. Proc Natl Acad Sci U S A 99:6889–6894
54. Xia LQ, Ma Y, He Y, Jones HD (2012) GM wheat development in China: current status and challenges to commercialization. J Exp Bot 63:1785–1790
55. Xu WN, Han ZJ (2008) Cloning and phylogenetic analysis of sid-1-like genes from aphids. J Insect Sci 8:1–6
56. Ye J, Fang L, Zheng HK, Zhang Y, Chen J, Zhang ZJ, Wang J, Li ST, Li RQ, Bolund L, Wang J (2006) WEGO: a web tool for plotting GO annotations. Nucleic Acids Res 34:293–297
57. Yu XD, Pickett J, Ma Y, Bruce T, Napier J, Jones HD, Xia LQ (2012) Metabolic engineering of plant-derived (E)-β-farnesene synthase genes for a novel type of aphid-resistant genetically-modified crop plants. J Integr Plant Biol 54:282–299
58. Yu XD, Wang GP, Huang SL, Ma YZ, Xia LQ (2014) Engineering plants for aphid resistance: current status and future perspectives. Theor Appl Genet 127:2065–2083
59. Zha WJ, Peng XX, Chen RZ, Du B, Zhu LL, He GC (2011) Knockdown of midgut genes by dsRNA-transgenic plant-mediated RNA interference in the hemipteran insect Nilaparvata lugens. PLoS One 6:e20504
60. Zhang M, Zhou Y, Wang H, Jones HD, Gao Q, Wang DH, Ma YZ, Xia LQ (2013) Identifying potential RNAi targets in grain aphid (Sitobion avenae F.) based on transcriptome profiling of its alimentary canal after feeding on wheat plants. BMC Genomics 14:560
61. Zhou X, Wheeler MM, Oi FM, Scharf ME (2008) RNA interference in the termite Reticulitermes flavipes through ingestion of double-stranded RNA. Insect Biochem Mol Biol 38:805–815