Global avian influenza surveillance in wild birds: A strategy to capture viral diversity

Emerging Infectious Diseases

Volumn 21, Issue 4, 2015, Pages

  Machalaba, Catherine C ^a   Elwood, Sarah E ^a   Forcella, Simona ^b   Smith, Kristine M ^a   Hamilton, Keith ^b   Jebara, Karim B ^b,c   Swayne, David E ^d   Webby, Richard J ^e   Mumford, Elizabeth ^f   Mazet, Jonna A K ^g   Gaidet, Nicolas ^h   Daszak, Peter ^a   Karesh, William B ^a,b,i  

^a ECOHEALTH ALLIANCE   (United States)

^b Centre collaborateur de l'Organisation mondiale de la santé animale   (France)

^c Ministry of Environment and Water ^*  (United Arab Emirates)

^d U S DEPARTMENT OF AGRICULTURE   (United States)

^e ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^f WORLD HEALTH ORGANIZATION   (Switzerland)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h CIRAD   (France)

ⁱ International Union for the Conservation of Nature Species Survival Commission   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL HEALTH; ARTICLE; AVIAN INFLUENZA; AVIAN INFLUENZA VIRUS; BIRD; COST EFFECTIVENESS ANALYSIS; DISEASE SURVEILLANCE; ENDEMIC DISEASE; HEALTH SURVEY; HUMAN; KNOWLEDGE BASE; MEDICAL INFORMATION; NONHUMAN; PATHOGENICITY; PHYLOGENY; PUBLIC HEALTH; ANIMAL; CLASSIFICATION; COST BENEFIT ANALYSIS; FACTUAL DATABASE; GENETIC VARIABILITY; GENETICS; HEALTH; INFLUENZA IN BIRDS; MANDATORY REPORTING; ORTHOMYXOVIRIDAE; WEB BROWSER; WILD ANIMAL;

ANIMALS; ANIMALS, WILD; BIRDS; COST-BENEFIT ANALYSIS; DATABASES, FACTUAL; GENETIC VARIATION; GLOBAL HEALTH; HUMANS; INFLUENZA IN BIRDS; MANDATORY REPORTING; ORTHOMYXOVIRIDAE; POPULATION SURVEILLANCE; WEB BROWSER;

EID: 84925337206     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid2104.141415     Document Type: Article

References (29)

1. Hoye BJ, Munster VJ, Nishiura H, Klaassen M, Fouchier RA. Surveillance of wild birds for avian influenza virus. Emerg Infect Dis. 2010;16:1827–34 and http://dx.doi.org/10.3201/eid1612.100589
2. Latorre-Margalef N, Tolf C, Grosbois V, Avril A, Bengtsson D, Wille M, et al. Long-term variation in influenza A virus prevalence and subtype diversity in migratory mallards in northern Europe. Proc Biol Sci. 2014;281:20140098 and http://dx.doi.org/10.1098/rspb.2014.0098
3. Liu D, Shi W, Shi Y, Wang D, Xiao H, Li W, et al. Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet. 2013;381:1926–32 and http://dx.doi.org/10.1016/ S0140-6736(13)60938-1
4. Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus AD, Fouchier RA. Global patterns of influenza a virus in wild birds. Science. 2006;312:384–8 and http://dx.doi.org/10.1126/ science.1122438
5. Gaidet N, Cappelle J, Takekawa JY, Prosser DJ, Iverson SA, Douglas DC, et al. Potential spread of highly pathogenic avian influenza H5N1 by wildfowl: dispersal ranges and rates determined from large-scale satellite telemetry. J Appl Ecol. 2010;47:1147–57. http://dx.doi.org/10.1111/j.1365-2664.2010.01845.x
6. Food and Agriculture Organization of the United Nations. Avian influenza A(H5N8) detected in Europe… a journey to the West? November 14, 2014 [cited 2014 Nov 17]. http://www.fao.org/ag/againfo/home/en/news_archive/2014_A-H5N8_detected_in_ Europe.html
7. Stallknecht DE, Brown JD. Wild birds and the epidemiology of avian influenza. J Wildl Dis. 2007;43(suppl):S15–20.
8. Fouchier RA, Munster VJ. Epidemiology of low pathogenic avian influenza viruses in wild birds. Rev Sci Tech. 2009;28:49–58 .
9. Chen Y, Liang W, Yang S, Wu N, Gao H, Sheng J, et al. Human infections with the emerging avian influenza A H7N9 virus from wet market poultry: clinical analysis and characterisation of viral genome. Lancet. 2013;381:1916–25 and http://dx.doi.org/10.1016/S0140-6736(13)60903-4
10. World Organisation for Animal Health. Chapter 10.4. Article 10.4.1. Infection with avian influenza viruses. In: Terrestrial animal health code. 23rd ed; Paris: The Organisation; 2014 [cited 2014 Dec 22]. http://www.oie.int/index.php?id=169&L=0&htmfile=chapitre_ avian_influenza_viruses.htm
11. Alexander DJ. An overview of the epidemiology of avian influenza. Vaccine. 2007;25:5637–44 and http://dx.doi.org/10.1016/ j.vaccine.2006.10.051
12. Wildlife Conservation Society. Avian influenza (H5N1), 2014 [cited 2014 Nov 17]. http://www.wcs.org/conservation-challenges/wildlife-health/disease-investigations/avian-influenza-h5n1.aspx
13. Vincent A, Awada L, Brown I, Chen H, Claes F, Dauphin G, et al. Review of influenza A virus in swine worldwide: a call for increased surveillance and research. Zoonoses Public Health. 2014;61:4–17 and http://dx.doi.org/10.1111/zph.12049
14. Shi W, Shi Y, Wu Y, Liu D, Gao GF. Origin and molecular characterization of the human-infecting H6N1 influenza virus in Taiwan. Protein Cell. 2013;4:846–53
15. World Organisation for Animal Health–Food and Agriculture Organization of the United Nations OFFLU. OFFLU strategy document for surveillance and monitoring of influenzas in animals, May 2013 [cited 2014 Dec 18]. http://www.offlu.net/fileadmin/home/en/publications/pdf/OFFLUsurveillance.pdf
16. OFFLU and STAR-IDAZ. A consultation to develop a global animal influenza research agenda. Paris, April 8–9, 2014 [cited 2014 Dec 18]. http://www.offlu.net/fileadmin/home/en/publications/pdf/300714/OFFLU_STAR-IDAZ_Executive_Summary_final.pdf
17. World Organization for Animal Health. World Animal Health Information Database (WAHID) interface. December 30, 2013 [cited 2014 Dec 18]. http://www.oie.int/wahis_2/public/wahid.php/Wahidhome/Home
18. Squires RB, Noronha J, Hunt V, Garcia-Sastre A, Macken C, Baumgarth N, et al. Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir Viruses. 2012;6:404–16.
19. Hesterberg U, Harris K, Stroud D, Guberti V, Busani L, Pittman M, et al. Avian influenza surveillance in wild birds in the European Union in 2006. Influenza Other Respir Viruses. 2009;3:1–14.
20. Fries AC, Nolting JM, Bowman AS, Killian ML, Wentworth DE, Slemons RD. Genomic analyses detect Eurasian-lineage H10 and additional H14 influenza A viruses recovered from waterfowl in the Central United States. Influenza Other Respir Viruses. 2014; 8:493–8.
21. Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, et al. The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog. 2008;4:1000076 and http://dx.doi.org/10.1371/journal.ppat.1000076
22. Gaidet N, Caron A, Cappelle J, Cumming GS, Balanca G, Hammoumi S, et al. Understanding the ecological drivers of avian influenza virus infection in wildfowl: a continental-scale study across Africa. Proc Biol Sci. 2012;279:1131–41 and http://dx.doi.org/10.1098/rspb.2011.1417
23. Fuller TL, Gilbert M, Martin V, Cappelle J, Hosseini P, Njabo K, et al. Predicting hotspots for influenza virus reassortment. Emerg Infect Dis. 2013;19:581–8 and http://dx.doi.org/10.3201/eid1904.120903
24. Olson SH, Parmley J, Soos C, Gilbert M, Latorre-Margalef N, Hall JS, et al. Sampling strategies and biodiversity of influenza a subtypes in wild birds. PLoS ONE. 2014;9:90826 and http://dx.doi.org/10.1371/journal.pone.0090826
25. Bevins SN, Pedersen K, Lutman MW, Baroch JA, Schmit BS, Kohler D, et al. Large-scale avian influenza surveillance in wild birds throughout the United States. PLoS ONE. 2014;9:104360 http://dx.doi.org/10.1371/journal.pone.0104360
26. Chmielewski R, Swayne DE. Avian influenza: public health and food safety concerns. Annu Rev Food Sci Technol. 2011;2:37–57.
27. Horimoto T, Rivera E, Pearson J, Senne D, Krauss S, Kawaoka Y, et al. Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Virology. 1995;213:223–30 and http://dx.doi.org/10.1006/viro.1995.1562
28. Bahl J, Krauss S, Kuhnert D, Fourment M, Raven G, Pryor SP, et al. Influenza a virus migration and persistence in North American wild birds. PLoS Pathog. 2013;9:e1003570 and http://dx.doi.org/10.1371/journal.ppat.1003570
29. Newcomb J, Harrington T, Aldrich S. The economic impact of selected infectious disease outbreaks. Cambridge (MA): Bio-Economic Research Associates; 2011.