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Volumn 160, Issue 1, 2015, Pages 215-224

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BAYES THEOREM; BIRD; EGYPT; HUMAN; INFLUENZA IN BIRDS; INFLUENZA VIRUS A H5N1; INFLUENZA, HUMAN; PHYLOGEOGRAPHY; VIROLOGY; ZOONOSIS;

EID: 84925284261     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-014-2262-5     Document Type: Article
Times cited : (26)

References (45)
  • 1
    • 3843050110 scopus 로고    scopus 로고
    • Zoonoses: Infectious Diseases Transmissible from Animals to Humans
    • Krauss H (2003) Zoonoses: Infectious Diseases Transmissible from Animals to Humans. ASM Press
    • (2003) ASM Press
    • Krauss, H.1
  • 2
    • 84887387058 scopus 로고    scopus 로고
    • A One-Step RT-PCR Array for Detection and Differentiation of Zoonotic Influenza Viruses H5N1, H9N2, and H1N1
    • COI: 1:CAS:528:DC%2BC3sXhslKnsb3P, PID: 24218127
    • Chen Y, Liu T, Cai L, Du H, Li M (2013) A One-Step RT-PCR Array for Detection and Differentiation of Zoonotic Influenza Viruses H5N1, H9N2, and H1N1. J Clin Lab Anal 27(6):450–460. doi:10.1002/jcla.21627
    • (2013) J Clin Lab Anal , vol.27 , Issue.6 , pp. 450-460
    • Chen, Y.1    Liu, T.2    Cai, L.3    Du, H.4    Li, M.5
  • 3
    • 84878815248 scopus 로고    scopus 로고
    • A global model of avian influenza prediction in wild birds: the importance of northern regions
    • PID: 23763792
    • Herrick K, Huettmann F, Lindgren M (2013) A global model of avian influenza prediction in wild birds: the importance of northern regions. Vet Res 44(1):42
    • (2013) Vet Res , vol.44 , Issue.1 , pp. 42
    • Herrick, K.1    Huettmann, F.2    Lindgren, M.3
  • 4
    • 33646006370 scopus 로고    scopus 로고
    • Synchrony, Waves, and spatial hierarchies in the spread of influenza
    • COI: 1:CAS:528:DC%2BD28XjslSktbs%3D, PID: 16574822
    • Viboud C, Bjørnstad ON, Smith DL, Simonsen L, Miller MA, Grenfell BT (2006) Synchrony, Waves, and spatial hierarchies in the spread of influenza. Science 312(5772):447–451. doi:10.1126/science.1125237
    • (2006) Science , vol.312 , Issue.5772 , pp. 447-451
    • Viboud, C.1    Bjørnstad, O.N.2    Smith, D.L.3    Simonsen, L.4    Miller, M.A.5    Grenfell, B.T.6
  • 5
    • 84875974125 scopus 로고    scopus 로고
    • Environmental predictors of seasonal influenza epidemics across temperate and tropical climates
    • COI: 1:CAS:528:DC%2BC3sXmtVejtL4%3D, PID: 23505366
    • Tamerius JD, Shaman J, Alonso WJ, Bloom-Feshbach K, Uejio CK, Comrie A, Viboud C (2013) Environmental predictors of seasonal influenza epidemics across temperate and tropical climates. PLoS Pathog 9(3):e1003194. doi:10.1371/journal.ppat.1003194
    • (2013) PLoS Pathog , vol.9 , Issue.3 , pp. e1003194
    • Tamerius, J.D.1    Shaman, J.2    Alonso, W.J.3    Bloom-Feshbach, K.4    Uejio, C.K.5    Comrie, A.6    Viboud, C.7
  • 6
    • 84869851108 scopus 로고    scopus 로고
    • Improving risk models for avian influenza: the role of intensive poultry farming and flooded land during the 2004 Thailand epidemic
    • PID: 23185352
    • Van Boeckel TP, Thanapongtharm W, Robinson T, Biradar CM, Xiao X, Gilbert M (2012) Improving risk models for avian influenza: the role of intensive poultry farming and flooded land during the 2004 Thailand epidemic. PLOS One 7(11):e49528. doi:10.1371/journal.pone.0049528
    • (2012) PLOS One , vol.7 , Issue.11 , pp. e49528
    • Van Boeckel, T.P.1    Thanapongtharm, W.2    Robinson, T.3    Biradar, C.M.4    Xiao, X.5    Gilbert, M.6
  • 8
    • 84055176877 scopus 로고    scopus 로고
    • Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data
    • COI: 1:STN:280:DC%2BC38%2Fptlenug%3D%3D
    • Ypma RJF, Bataille AMA, Stegeman A, Koch G, Wallinga J, van Ballegooijen WM (2012) Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data. Proc R Soc B: Biol Sci 279(1728):444–450. doi:10.1098/rspb.2011.0913
    • (2012) Proc R Soc B: Biol Sci , vol.279 , Issue.1728 , pp. 444-450
    • Ypma, R.J.F.1    Bataille, A.M.A.2    Stegeman, A.3    Koch, G.4    Wallinga, J.5    van Ballegooijen, W.M.6
  • 9
    • 84887054328 scopus 로고    scopus 로고
    • Relating phylogenetic trees to transmission trees of infectious disease outbreaks
    • PID: 24037268
    • Ypma RJF, van Ballegooijen WM, Wallinga J (2013) Relating phylogenetic trees to transmission trees of infectious disease outbreaks. Genetics. doi:10.1534/genetics.113.154856
    • (2013) Genetics
    • Ypma, R.J.F.1    van Ballegooijen, W.M.2    Wallinga, J.3
  • 10
    • 33645421057 scopus 로고    scopus 로고
    • Cumulative number of confirmed human cases for avian influenza A (H5N1) reported to WHO
    • WHO (2013) Cumulative number of confirmed human cases for avian influenza A (H5N1) reported to WHO, 2003–2013
    • (2013)
  • 11
    • 79957673671 scopus 로고    scopus 로고
    • An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: epidemiology and control challenges
    • COI: 1:STN:280:DC%2BC3Mzot1OjtA%3D%3D
    • Abdelwhab E, Hafez H (2011) An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: epidemiology and control challenges. Epidemiol Infecti 139(05):647–657. doi:10.1017/S0950268810003122
    • (2011) Epidemiol Infecti , vol.139 , Issue.5 , pp. 647-657
    • Abdelwhab, E.1    Hafez, H.2
  • 12
    • 77953840811 scopus 로고    scopus 로고
    • Circulation of avian influenza H5N1 in live bird markets in Egypt
    • COI: 1:STN:280:DC%2BC3cnlsVKmsQ%3D%3D, PID: 20608538
    • Abdelwhab EM, Selim AA, Arafa A, Galal S, Kilany WH, Hassan MK, Aly MM, Hafez MH (2010) Circulation of avian influenza H5N1 in live bird markets in Egypt. Avian Dis 54(2):911–914. doi:10.1637/9099-100809-RESNOTE.1
    • (2010) Avian Dis , vol.54 , Issue.2 , pp. 911-914
    • Abdelwhab, E.M.1    Selim, A.A.2    Arafa, A.3    Galal, S.4    Kilany, W.H.5    Hassan, M.K.6    Aly, M.M.7    Hafez, M.H.8
  • 13
    • 83555173308 scopus 로고    scopus 로고
    • Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature
    • WHO (2012) Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza Other Respir Viruses 6(1):1–5. doi:10.1111/j.1750-2659.2011.00298.x
    • (2012) Influenza Other Respir Viruses , vol.6 , Issue.1 , pp. 1-5
    • WHO1
  • 18
    • 0011373760 scopus 로고    scopus 로고
    • Variable selection for regression models
    • Kuo L, Mallick B (1998) Variable selection for regression models. Sankhya 60(1):65–81
    • (1998) Sankhya , vol.60 , Issue.1 , pp. 65-81
    • Kuo, L.1    Mallick, B.2
  • 19
    • 84870288271 scopus 로고    scopus 로고
    • BART: Bayesian additive regression trees
    • Chipman H, George E, McCulloch R (2010) BART: Bayesian additive regression trees. Ann Appl Stat 4(1):266–298
    • (2010) Ann Appl Stat , vol.4 , Issue.1 , pp. 266-298
    • Chipman, H.1    George, E.2    McCulloch, R.3
  • 20
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • COI: 1:CAS:528:DC%2BC38XhtFagu7fO, PID: 22367748
    • Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29(8):1969–1973. doi:10.1093/molbev/mss075
    • (2012) Mol Biol Evol , vol.29 , Issue.8 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 22
    • 84924344095 scopus 로고    scopus 로고
    • CAPMAS (2012 est) Statistical tables for population at governorate level
    • CAPMAS (2012 est) Statistical tables for population at governorate level
  • 23
    • 84924344094 scopus 로고    scopus 로고
    • FAOSTAT (2014). Accessed 21 July 2014
    • FAOSTAT (2014) http://faostat3.fao.org/faostat-gateway/go/to/home/E. Accessed 21 July 2014
  • 24
    • 84924344093 scopus 로고    scopus 로고
    • Global livestock production and health atlas (2014). Accessed 2014 Jul 21
    • Global livestock production and health atlas (2014) http://kids.fao.org/glipha/index.html. Accessed 2014 Jul 21
  • 25
    • 84875767720 scopus 로고    scopus 로고
    • A single amino acid at the hemagglutinin cleavage site contributes to the pathogenicity but not the transmission of Egyptian highly pathogenic H5N1 influenza virus in chickens
    • COI: 1:CAS:528:DC%2BC3sXotVyqur0%3D, PID: 23408622
    • Yoon S-W, Kayali G, Ali MA, Webster RG, Webby RJ, Ducatez MF (2013) A single amino acid at the hemagglutinin cleavage site contributes to the pathogenicity but not the transmission of Egyptian highly pathogenic H5N1 influenza virus in chickens. J Virol 87(8):4786–4788. doi:10.1128/jvi.03551-12
    • (2013) J Virol , vol.87 , Issue.8 , pp. 4786-4788
    • Yoon, S.-W.1    Kayali, G.2    Ali, M.A.3    Webster, R.G.4    Webby, R.J.5    Ducatez, M.F.6
  • 26
    • 84924344092 scopus 로고    scopus 로고
    • NOAA (2014) National Climatic Data Center. Accessed 21 July 2014
    • NOAA (2014) National Climatic Data Center. http://www.ncdc.noaa.gov/. Accessed 21 July 2014
  • 27
    • 84924344091 scopus 로고    scopus 로고
    • WMO (2013) Climate data and data related products. Accessed 21 July 2014
    • WMO (2013) Climate data and data related products. http://www.wmo.int/pages/themes/climate/climate_data_and_products.php. Accessed 21 July 2014
  • 28
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • COI: 1:CAS:528:DC%2BD3MXjtVagtLY%3D, PID: 11287657
    • Beerli P, Felsenstein J (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA 98(8):4563–4568. doi:10.1073/pnas.081068098
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.8 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 29
    • 77955288981 scopus 로고    scopus 로고
    • Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats
    • COI: 1:CAS:528:DC%2BC3cXps1ehtLc%3D, PID: 20689015
    • Streicker DG, Turmelle AS, Vonhof MJ, Kuzmin IV, McCracken GF, Rupprecht CE (2010) Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats. Science 329(5992):676–679. doi:10.1126/science.1188836
    • (2010) Science , vol.329 , Issue.5992 , pp. 676-679
    • Streicker, D.G.1    Turmelle, A.S.2    Vonhof, M.J.3    Kuzmin, I.V.4    McCracken, G.F.5    Rupprecht, C.E.6
  • 30
    • 84880470217 scopus 로고    scopus 로고
    • Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints
    • PID: 23382420
    • Faria NR, Suchard MA, Rambaut A, Streicker DG, Lemey P (2013) Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Philos Trans R Soc Lond B Biol Sci 368(1614):20120196. doi:10.1098/rstb.2012.0196
    • (2013) Philos Trans R Soc Lond B Biol Sci , vol.368 , Issue.1614 , pp. 20120196
    • Faria, N.R.1    Suchard, M.A.2    Rambaut, A.3    Streicker, D.G.4    Lemey, P.5
  • 31
    • 59249086637 scopus 로고    scopus 로고
    • Estimation of transmission parameters of H5N1 avian influenza virus in chickens
    • PID: 19180190
    • Bouma A, Claassen I, Natih K, Klinkenberg D, Donnelly CA, Koch G, van Boven M (2009) Estimation of transmission parameters of H5N1 avian influenza virus in chickens. PLoS Pathog 5(1):e1000281. doi:10.1371/journal.ppat.1000281
    • (2009) PLoS Pathog , vol.5 , Issue.1 , pp. e1000281
    • Bouma, A.1    Claassen, I.2    Natih, K.3    Klinkenberg, D.4    Donnelly, C.A.5    Koch, G.6    van Boven, M.7
  • 32
    • 21444440302 scopus 로고    scopus 로고
    • Models for estimating Bayes factors with applications to phylogeny and tests of monophyly
    • PID: 16135017
    • Suchard MA, Weiss RE, Sinsheimer JS (2005) Models for estimating Bayes factors with applications to phylogeny and tests of monophyly. Biometrics 61(3):665–673. doi:10.1111/j.1541-0420.2005.00352.x
    • (2005) Biometrics , vol.61 , Issue.3 , pp. 665-673
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 33
    • 70349675664 scopus 로고    scopus 로고
    • Bayesian phylogeography finds its roots
    • PID: 19779555
    • Lemey P, Rambaut A, Drummond AJ, Suchard MA (2009) Bayesian phylogeography finds its roots. PLoS Comput Biol 5(9):e1000520. doi:10.1371/journal.pcbi.1000520
    • (2009) PLoS Comput Biol , vol.5 , Issue.9 , pp. e1000520
    • Lemey, P.1    Rambaut, A.2    Drummond, A.J.3    Suchard, M.A.4
  • 35
    • 77956488734 scopus 로고    scopus 로고
    • Bayesian random local clocks, or one rate to rule them all
    • PID: 20807414
    • Drummond A, Suchard M (2010) Bayesian random local clocks, or one rate to rule them all. BMC Biol 8(1):114
    • (2010) BMC Biol , vol.8 , Issue.1 , pp. 114
    • Drummond, A.1    Suchard, M.2
  • 37
    • 84924344090 scopus 로고    scopus 로고
    • Canada S (2013) Population estimate. Accessed December 18 2013
    • Canada S (2013) Population estimate. http://www.statcan.gc.ca/start-debut-eng.html. Accessed December 18 2013
  • 38
    • 84924344089 scopus 로고    scopus 로고
    • Egypt CAfPMaS (2012) Arab Republic of Egypt. Accessed Sep 26 2013
    • Egypt CAfPMaS (2012) Arab Republic of Egypt. http://www.citypopulation.de/Egypt.html. Accessed Sep 26 2013
  • 39
    • 84858680287 scopus 로고    scopus 로고
    • Ecological determinants of highly pathogenic avian influenza (H5N1) outbreaks in Bangladesh
    • COI: 1:CAS:528:DC%2BC38XltVynu7Y%3D, PID: 22470496
    • Ahmed SSU, Ersbøll AK, Biswas PK, Christensen JP, Hannan ASMA, Toft N (2012) Ecological determinants of highly pathogenic avian influenza (H5N1) outbreaks in Bangladesh. PLoS One 7(3):e33938. doi:10.1371/journal.pone.0033938
    • (2012) PLoS One , vol.7 , Issue.3 , pp. e33938
    • Ahmed, S.S.U.1    Ersbøll, A.K.2    Biswas, P.K.3    Christensen, J.P.4    Hannan, A.S.M.A.5    Toft, N.6
  • 41
    • 84860392716 scopus 로고    scopus 로고
    • Identifying risk factors of highly pathogenic avian influenza (H5N1 subtype) in Indonesia
    • Loth L, Gilbert M, Wu J, Czarnecki C, Hidayat M, Xiao X (2011) Identifying risk factors of highly pathogenic avian influenza (H5N1 subtype) in Indonesia. Preventive Vet Med 102 (1):50–58. doi:10.1016/j.prevetmed.2011.06.006
    • (2011) Preventive Vet Med , vol.102 , Issue.1 , pp. 50-58
    • Loth, L.1    Gilbert, M.2    Wu, J.3    Czarnecki, C.4    Hidayat, M.5    Xiao, X.6
  • 42
    • 34548733567 scopus 로고    scopus 로고
    • An analysis of the spatial and temporal patterns of highly pathogenic avian influenza occurrence in Vietnam using national surveillance data
    • Pfeiffer DU, Minh PQ, Martin V, Epprecht M, Otte MJ (2007) An analysis of the spatial and temporal patterns of highly pathogenic avian influenza occurrence in Vietnam using national surveillance data. Vet J 174 (2):302–309. doi:10.1016/j.tvjl.2007.05.010
    • (2007) Vet J , vol.174 , Issue.2 , pp. 302-309
    • Pfeiffer, D.U.1    Minh, P.Q.2    Martin, V.3    Epprecht, M.4    Otte, M.J.5
  • 44
    • 84872146640 scopus 로고    scopus 로고
    • Different environmental drivers of highly pathogenic avian influenza H5N1 outbreaks in poultry and wild birds
    • COI: 1:CAS:528:DC%2BC3sXhtFamtLo%3D, PID: 23308201
    • Si Y, de Boer WF, Gong P (2013) Different environmental drivers of highly pathogenic avian influenza H5N1 outbreaks in poultry and wild birds. PLoS One 8(1):e53362. doi:10.1371/journal.pone.0053362
    • (2013) PLoS One , vol.8 , Issue.1 , pp. e53362
    • Si, Y.1    de Boer, W.F.2    Gong, P.3
  • 45
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • COI: 1:CAS:528:DC%2BD2cXjtFGmuw%3D%3D, PID: 14726583
    • Grenfell BT, Pybus OG, Gog JR, Wood JLN, Daly JM, Mumford JA, Holmes EC (2004) Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303(5656):327–332. doi:10.1126/science.1090727
    • (2004) Science , vol.303 , Issue.5656 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.N.4    Daly, J.M.5    Mumford, J.A.6    Holmes, E.C.7


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