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Journal of Clinical Microbiology

Volumn 53, Issue 4, 2015, Pages 1054-1055

Integration of whole-genome sequencing into infection control practices: The potential and the hurdles

(2) Robilotti, Elizabeth a Kamboj, Mini a

a MEMORIAL SLOAN KETTERING CANCER CENTER (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACINETOBACTER BAUMANNII; DNA FRAGMENTATION ASSAY; ENDEMIC DISEASE; EPIDEMIC; GENE SEQUENCE; GENOME ANALYSIS; HUMAN; INFECTION CONTROL; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; MICROBIAL IDENTIFICATION; MICROBIOLOGY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NOTE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RIBOTYPING; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM; VANCOMYCIN RESISTANT ENTEROCOCCUS; VARIABLE NUMBER OF TANDEM REPEAT; WHOLE GENOME SEQUENCING; BACTERIAL GENOME; DNA SEQUENCE; GENETICS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; PROCEDURES; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA INFECTIONS; STATISTICS AND NUMERICAL DATA;

DISEASE OUTBREAKS; GENOME, BACTERIAL; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; SALMONELLA INFECTIONS; SALMONELLA TYPHIMURIUM; SEQUENCE ANALYSIS, DNA;

EID: 84925245476 PISSN: 00951137 EISSN: 1098660X Source Type: Journal
DOI: 10.1128/JCM.00349-15 Document Type: Note

Times cited : (10)

References (13)

1
- 84880432120
- Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis
- Köser CU, Bryant JM, Becq J, Torok ME, Ellington MJ, Marti-Renom MA, Carmichael AJ, Parkhill J, Smith GP, Peacock SJ. 2013. Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis. N Engl J Med 369:290-292. http://dx.doi.org/10.1056/NEJMc1215305.
- (2013) N Engl J Med , vol.369 , pp. 290-292
- Köser, C.U.¹ Bryant, J.M.² Becq, J.³ Torok, M.E.⁴ Ellington, M.J.⁵ Marti-Renom, M.A.⁶ Carmichael, A.J.⁷ Parkhill, J.⁸ Smith, G.P.⁹ Peacock, S.J.¹⁰

2
- 84874469388
- Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: A longitudinal molecular epidemiological study
- Roetzer A, Diel R, Kohl TA, Ruckert C, Nubel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rusch-Gerdes S, Supply P, Kalinowski J, Niemann S. 2013. Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study. PLoS Med 10:e1001387. http://dx.doi.org/10.1371/journal.pmed.1001387.
- (2013) PLoS Med , vol.10 , pp. e1001387
- Roetzer, A.¹ Diel, R.² Kohl, T.A.³ Ruckert, C.⁴ Nubel, U.⁵ Blom, J.⁶ Wirth, T.⁷ Jaenicke, S.⁸ Schuback, S.⁹ Rusch-Gerdes, S.¹⁰ Supply, P.¹¹ Kalinowski, J.¹² Niemann, S.¹³

3
- 84926623978
- Whole-genome sequencing and epidemiological analysis do not provide evidence for cross-transmission of Mycobacterium abscessus in a cohort of pediatric cystic fibrosis patients
- 1 December posting date
- Harris KA, Underwood A, Kenna DT, Brooks A, Kavaliunaite E, Kapatai G, Tewolde R, Aurora P, Dixon G. 1 December 2014, posting date. Whole-genome sequencing and epidemiological analysis do not provide evidence for cross-transmission of Mycobacterium abscessus in a cohort of pediatric cystic fibrosis patients. Clin Infect Dis http://dx.doi.org/10.1093/cid/ciu967.
- (2014) Clin Infect Dis
- Harris, K.A.¹ Underwood, A.² Kenna, D.T.³ Brooks, A.⁴ Kavaliunaite, E.⁵ Kapatai, G.⁶ Tewolde, R.⁷ Aurora, P.⁸ Dixon, G.⁹

4
- 84862199752
- Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
- Köser CU, Holden MT, Ellington MJ, Cartwright EJ, Brown NM, Ogilvy-Stuart AL, Hsu LY, Chewapreecha C, Croucher NJ, Harris SR, Sanders M, Enright MC, Dougan G, Bentley SD, Parkhill J, Fraser LJ, Betley JR, Schulz-Trieglaff OB, Smith GP, Peacock SJ. 2012. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med 366: 2267-2275. http://dx.doi.org/10.1056/NEJMoa1109910.
- (2012) N Engl J Med , vol.366 , pp. 2267-2275
- Köser, C.U.¹ Holden, M.T.² Ellington, M.J.³ Cartwright, E.J.⁴ Brown, N.M.⁵ Ogilvy-Stuart, A.L.⁶ Hsu, L.Y.⁷ Chewapreecha, C.⁸ Croucher, N.J.⁹ Harris, S.R.¹⁰ Sanders, M.¹¹ Enright, M.C.¹² Dougan, G.¹³ Bentley, S.D.¹⁴ Parkhill, J.¹⁵ Fraser, L.J.¹⁶ Betley, J.R.¹⁷ Schulz-Trieglaff, O.B.¹⁸ Smith, G.P.¹⁹ Peacock, S.J.²⁰ more..

5
- 84865323065
- Tracking a hospital outbreak of car-bapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
- Snitkin ES, Zelazny AM, Thomas PJ, Stock F, Group NCSP, Henderson DK, Palmore TN, Segre JA. 2012. Tracking a hospital outbreak of car-bapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med 4:148ra116. http://dx.doi.org/10.1126/scitranslmed.3004129
- (2012) Sci Transl Med , vol.4 , pp. 148ra116
- Snitkin, E.S.¹ Zelazny, A.M.² Thomas, P.J.³ Stock, F.⁴ Group, N.C.S.P.⁵ Henderson, D.K.⁶ Palmore, T.N.⁷ Segre, J.A.⁸

6
- 84872513471
- Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: A retrospective observational study
- Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE. 2013. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study. Lancet Infect Dis 13:137-146. http://dx.doi.org/10.1016/S1473-3099(12)70277-3.
- (2013) Lancet Infect Dis , vol.13 , pp. 137-146
- Walker, T.M.¹ Ip, C.L.² Harrell, R.H.³ Evans, J.T.⁴ Kapatai, G.⁵ Dedicoat, M.J.⁶ Eyre, D.W.⁷ Wilson, D.J.⁸ Hawkey, P.M.⁹ Crook, D.W.¹⁰ Parkhill, J.¹¹ Harris, D.¹² Walker, A.S.¹³ Bowden, R.¹⁴ Monk, P.¹⁵ Smith, E.G.¹⁶ Peto, T.E.¹⁷

7
- 84884510020
- Diverse sources of C. difficile infection identified on whole-genome sequencing
- Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, Ip CL, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TE, Walker AS. 2013. Diverse sources of C. difficile infection identified on whole-genome sequencing. N Engl J Med 369:1195-1205. http://dx.doi.org/10.1056/NEJMoa1216064.
- (2013) N Engl J Med , vol.369 , pp. 1195-1205
- Eyre, D.W.¹ Cule, M.L.² Wilson, D.J.³ Griffiths, D.⁴ Vaughan, A.⁵ O'Connor, L.⁶ Ip, C.L.⁷ Golubchik, T.⁸ Batty, E.M.⁹ Finney, J.M.¹⁰ Wyllie, D.H.¹¹ Didelot, X.¹² Piazza, P.¹³ Bowden, R.¹⁴ Dingle, K.E.¹⁵ Harding, R.M.¹⁶ Crook, D.W.¹⁷ Wilcox, M.H.¹⁸ Peto, T.E.¹⁹ Walker, A.S.²⁰ more..

8
- 84866148001
- Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
- Köser CU, Ellington MJ, Cartwright EJ, Gillespie SH, Brown NM, Farrington M, Holden MT, Dougan G, Bentley SD, Parkhill J, Peacock SJ. 2012. Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PLoS Pathog 8:e1002824. http://dx.doi.org/10.1371/journal.ppat.1002824.
- (2012) PLoS Pathog , vol.8 , pp. e1002824
- Köser, C.U.¹ Ellington, M.J.² Cartwright, E.J.³ Gillespie, S.H.⁴ Brown, N.M.⁵ Farrington, M.⁶ Holden, M.T.⁷ Dougan, G.⁸ Bentley, S.D.⁹ Parkhill, J.¹⁰ Peacock, S.J.¹¹

9
- 84925274597
- Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak
- Octavia S, Wang Q, Tanaka MM, Kaur S, Sintchenko V, Lan R. 2015. Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak. J Clin Microbiol 53:1063-1071. http://dx.doi.org/10.1128/JCM.03235-14.
- (2015) J Clin Microbiol , vol.53 , pp. 1063-1071
- Octavia, S.¹ Wang, Q.² Tanaka, M.M.³ Kaur, S.⁴ Sintchenko, V.⁵ Lan, R.⁶

10
- 84925263609
- Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology
- Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT. 2015. Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology. J Clin Microbiol 53:1072-1079. http://dx.doi.org/10.1128/JCM.03385-14.
- (2015) J Clin Microbiol , vol.53 , pp. 1072-1079
- Salipante, S.J.¹ SenGupta, D.J.² Cummings, L.A.³ Land, T.A.⁴ Hoogestraat, D.R.⁵ Cookson, B.T.⁶

11
- 84877266636
- Updating benchtop sequencing performance comparison
- Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D. 2013. Updating benchtop sequencing performance comparison. Nat Biotechnol 31:294-296. http://dx.doi.org/10.1038/nbt.2522.
- (2013) Nat Biotechnol , vol.31 , pp. 294-296
- Jünemann, S.¹ Sedlazeck, F.J.² Prior, K.³ Albersmeier, A.⁴ John, U.⁵ Kalinowski, J.⁶ Mellmann, A.⁷ Goesmann, A.⁸ Von Haeseler, A.⁹ Stoye, J.¹⁰ Harmsen, D.¹¹

12
- 84860756398
- Performance comparison of benchtop high-throughput sequencing platforms
- Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, Pallen MJ. 2012. Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol 30:434-439. http://dx.doi.org/10.1038/nbt.2198.
- (2012) Nat Biotechnol , vol.30 , pp. 434-439
- Loman, N.J.¹ Misra, R.V.² Dallman, T.J.³ Constantinidou, C.⁴ Gharbia, S.E.⁵ Wain, J.⁶ Pallen, M.J.⁷

13
- 84890558766
- Bacterial genome sequencing in the clinic: Bioinformatic challenges and solutions
- Fricke WF, Rasko DA. 2014. Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions. Nat Rev Genet 15:49-55. http://dx.doi.org/10.1038/nrg3624.
- (2014) Nat Rev Genet , vol.15 , pp. 49-55
- Fricke, W.F.¹ Rasko, D.A.²

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