Hamburger polyomaviruses

Journal of General Virology

Volumn 96, Issue 4, 2015, Pages 833-839

  Peretti, Alberto ^a   Fitzgerald, Peter C ^a   Bliskovsky, Valery ^a   Buck, Christopher B ^a   Pastrana, Diana V ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ADENOVIRIDAE; ARTICLE; BEEF; BIOINFORMATICS; BOVINAE; BOVINE PAPILLOMAVIRUS TYPE 1; CHICKEN MEAT; CIRCOVIRUS; CONTIG MAPPING; DNA SEQUENCE; DNA VIRUS; FOOD CONTAMINATION; GYROVIRUS; HERPESVIRIDAE; INDEL MUTATION; MEAT; MERKEL CELL POLYOMAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYOMA VIRUS; PORCINE PARVOVIRUS; PORK; PRIORITY JOURNAL; RACCOON; REAL TIME POLYMERASE CHAIN REACTION; VIRION; VIRUS DETECTION; VIRUS GENOME; ANIMAL; BOVINE; CATTLE DISEASE; CHICKEN; FOOD CONTROL; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PIG; POLYOMAVIRUS; POLYOMAVIRUS INFECTION; VETERINARY; VIROLOGY;

ANIMALIA; BOVINE POLYOMAVIRUS; DNA VIRUSES; MIRIDAE; POLYOMAVIRUS; PROCYON;

ANIMALS; CATTLE; CATTLE DISEASES; CHICKENS; FOOD MICROBIOLOGY; GENOME, VIRAL; HUMANS; MEAT; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYOMAVIRUS; POLYOMAVIRUS INFECTIONS; SWINE;

EID: 84924973183     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.000033     Document Type: Article

References (32)

1. Bouvard, V., Baan, R. A., Grosse, Y., Lauby-Secretan, B., El Ghissassi, F., Benbrahim-Tallaa, L., Guha, N., Straif, K. & WHO International Agency for Research on Cancer Monograph Working Group (2012). Carcinogenicity of malaria and of some polyomaviruses. Lancet Oncol 13, 339–340.
2. Carter, J. J., Daugherty, M. D., Qi, X., Bheda-Malge, A., Wipf, G. C., Robinson, K., Roman, A., Malik, H. S. & Galloway, D. A. (2013). Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A 110, 12744–12749.
3. Crouse, J. & Amorese, D. (1987). Ethanol precipitation: ammonium acetate as an alternative to sodium acetate. Focus 19, 13–16.
4. Dela Cruz, F. N., Jr, Giannitti, F., Li, L., Woods, L. W., Del Valle, L., Delwart, E. & Pesavento, P. A. (2013). Novel polyomavirus associated with brain tumors in free-ranging raccoons, western United States. Emerg Infect Dis 19, 77–84.
5. Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J. F., Guindon, S., Lefort, V. & other authors (2008). Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36 (Web Server issue), W465–W469.
6. Drexler, M. (2002). Secret Agents: The Menace of Emerging Infections. Washington, DC: The National Academies Press.
7. Feng, H., Shuda, M., Chang, Y. & Moore, P. S. (2008). Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319, 1096–1100.
8. Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R. & other authors (2011). Full-length transcriptome assembly from RNASeq data without a reference genome. Nat Biotechnol 29, 644 652.
9. Howley, P. M., Newell, N., Shah, K. V., Law, M. F., Gruss, P., Sauer, G. & Kelly, T. J., Jr (1979). Identification of the primate papovavirus HD as the stump-tailed macaque virus. J Virol 30, 400–403.
10. Johne, R., Müller, H., Rector, A., van Ranst, M. & Stevens, H. (2009). Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol 17, 205–211.
11. Johne, R., Buck, C. B., Allander, T., Atwood, W. J., Garcea, R. L., Imperiale, M. J., Major, E. O., Ramqvist, T. & Norkin, L. C. (2011). Taxonomical developments in the family Polyomaviridae. Arch Virol 156, 1627–1634.
12. Kilcher, S., Loessner, M. J. & Klumpp, J. (2010). Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites. J Bacteriol 192, 5441–5453.
13. Langmead, B. & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357–359.
14. Leendertz, F. H., Scuda, N., Cameron, K. N., Kidega, T., Zuberbühler, K., Leendertz, S. A., Couacy-Hymann, E., Boesch, C., Calvignac, S. & Ehlers, B. (2011). African great apes are naturally infected with polyomaviruses closely related to Merkel cell polyomavirus. J Virol 85, 916–924.
15. Nims, R. W. & Plavsic, M. (2013). Polyomavirus inactivation – a review. Biologicals 41, 63–70.
16. Parry, J. V. & Gardner, S. D. (1986). Human exposure to bovine polyomavirus: a zoonosis? Arch Virol 87, 287–296.
17. Pastrana, D. V., FitzGerald, P. C., Phan, G. Q., Raiji, M. T., Murphy, P. M., McDermott, D. H., Velez, D., Bliskovsky, V., McBride, A. A. & Buck, C. B. (2013a). A divergent variant of the eleventh human polyomavirus species, Saint Louis Polyomavirus. Genome Announcements 1, e00812–e00813.
18. Pastrana, D. V., Ray, U., Magaldi, T. G., Schowalter, R. M., Çuburu, N. & Buck, C. B. (2013b). BK polyomavirus genotypes represent distinct serotypes with distinct entry tropism. J Virol 87, 10105–10113.
19. Paulson, K. G., Carter, J. J., Johnson, L. G., Cahill, K. W., Iyer, J. G., Schrama, D., Becker, J. C., Madeleine, M. M., Nghiem, P. & Galloway, D. A. (2010). Antibodies to merkel cell polyomavirus T antigen oncoproteins reflect tumor burden in merkel cell carcinoma patients. Cancer Res 70, 8388–8397.
20. Richmond, J. E., Parry, J. V. & Gardner, S. D. (1984). Characterisation of a polyomavirus in two foetal rhesus monkey kidney cell lines used for the growth of hepatitis A virus. Arch Virol 80, 131–146.
21. Rusiñol, M., Fernandez-Cassi, X., Hundesa, A., Vieira, C., Kern, A., Eriksson, I., Ziros, P., Kay, D., Miagostovich, M. & other authors (2014). Application of human and animal viral microbial source tracking tools in fresh and marine waters from five different geographical areas. Water Res 59, 119–129.
22. Sauerbrei, A. & Wutzler, P. (2009). Testing thermal resistance of viruses. Arch Virol 154, 115–119.
23. Schowalter, R. M. & Buck, C. B. (2013). The Merkel cell polyomavirus minor capsid protein. PLoS Pathog 9, e1003558.
24. Schowalter, R. M., Pastrana, D. V., Pumphrey, K. A., Moyer, A. L. & Buck, C. B. (2010). Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe 7, 509–515.
25. Schuurman, R., van Steenis, B., van Strien, A., van der Noordaa, J. & Sol, C. (1991). Frequent detection of bovine polyomavirus in commercial batches of calf serum by using the polymerase chain reaction. J Gen Virol 72, 2739–2745.
26. Veterinary Record editorial board (2014). Horsemeat in ‘beef’ products: European Commission summarises progress. Vet Rec 174, 264.
27. Waldeck, W. & Sauer, G. (1977). New oncogenic papova virus from primate cells. Nature 269, 171–173.
28. Yamaguchi, H., Kobayashi, S., Ishii, A., Ogawa, H., Nakamura, I., Moonga, L., Hang’ombe, B. M., Mweene, A. S., Thomas, Y. & other authors (2013). Identification of a novel polyomavirus from vervet monkeys in Zambia. J Gen Virol 94, 1357–1364.
29. Zhang, W., Li, L., Deng, X., Kapusinszky, B. & Delwart, E. (2014). What is for dinner? Viral metagenomics of US store bought beef, pork, and chicken. Virology 468-470, 303–310.
30. Zur Hausen, H. (2008). The Search for Infectious Causes of Human Cancers: Where and Why. http://www.nobelprize.org/nobel_prizes/ medicine/laureates/2008/hausen_lecture.pdf.
31. Zur Hausen, H. (2009). Papillomaviruses in the causation of human cancers – a brief historical account. Virology 384, 260–265.
32. Zur Hausen, H. (2012). Red meat consumption and cancer: reasons to suspect involvement of bovine infectious factors in colorectal cancer. Int J Cancer 130, 2475–2483.