BK polyomavirus genotypes represent distinct serotypes with distinct entry tropism

Journal of Virology

Volumn 87, Issue 18, 2013, Pages 10105-10113

  Pastrana, Diana V ^a   Ray, Upasana ^a   Magaldi, Thomas G ^a   Schowalter, Rachel M ^a   çuburu, Nicolas ^a   Buck, Christopher B ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL SURFACE RECEPTOR; GANGLIOSIDE; NEUTRALIZING ANTIBODY;

ANIMAL EXPERIMENT; ANTIBODY RESPONSE; ANTIBODY TITER; ANTIGEN EXPRESSION; ARTICLE; BINDING AFFINITY; BINDING SITE; BK VIRUS; CONTROLLED STUDY; FEMALE; GENOTYPE; HUMAN; HUMAN CELL; IMMUNE RESPONSE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RECEPTOR BINDING; SEROLOGY; SEROTYPE; VIRAL TROPISM; VIRION; VIRUS ENTRY; VIRUS ISOLATION; VIRUS NEUTRALIZATION; VIRUS PARTICLE; VIRUS TITRATION;

ANIMALS; ANTIBODIES, NEUTRALIZING; ANTIBODIES, VIRAL; BK VIRUS; DNA, VIRAL; FEMALE; GENOTYPE; HUMANS; MICE; MICE, INBRED BALB C; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SEROTYPING; VIRAL TROPISM; VIRAL VACCINES; VIRUS INTERNALIZATION;

EID: 84883296889     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01189-13     Document Type: Article

References (42)

1. Luo C, Bueno M, Kant J, Martinson J, Randhawa P. 2009. Genotyping schemes for polyomavirus BK, using gene-specific phylogenetic trees and single nucleotide polymorphism analysis. J. Virol. 83:2285-2297.
2. Zhong S, Randhawa PS, Ikegaya H, Chen Q, Zheng HY, Suzuki M, Takeuchi T, Shibuya A, Kitamura T, Yogo Y. 2009. Distribution patterns of BK polyomavirus (BKV) subtypes and subgroups in American, European and Asian populations suggest co-migration of BKV and the human race. J. Gen. Virol. 90:144-152.
3. Stolt A, Sasnauskas K, Koskela P, Lehtinen M, Dillner J. 2003. Seroepidemiology of the human polyomaviruses. J. Gen. Virol. 84:1499-1504.
4. Zhong S, Zheng HY, Suzuki M, Chen Q, Ikegaya H, Aoki N, Usuku S, Kobayashi N, Nukuzuma S, Yasuda Y, Kuniyoshi N, Yogo Y, Kitamura T. 2007. Age-related urinary excretion of BK polyomavirus by nonimmunocompromised individuals. J. Clin. Microbiol. 45:193-198.
5. Husseiny MI, Anastasi B, Singer J, Lacey SF. 2010. A comparative study of Merkel cell, BK and JC polyomavirus infections in renal transplant recipients and healthy subjects. J. Clin. Virol. 49:137-140.
6. Abend JR, Jiang M, Imperiale MJ. 2009. BK virus and human cancer: innocent until proven guilty. Semin. Cancer Biol. 19:252-260.
7. Dalianis T, Hirsch HH. 2013. Human polyomaviruses in disease and cancer. Virology 437:63-72.
8. Kasiske BL ZM, Craig JC, Ekberg H, Garvey CA, Green MD, Jha V, Josephson MA, Kiberd BA, Kreis HA, McDonald RA, Newmann JM, Obrador GT, Chapman JR, Vincenti FG, Balk EM, Wagner M, Raman G, Earley A, Abariga S. 2009. KDIGO clinical practice guideline for the care of kidney transplant recipients. Am. J. Transplant 9 (Suppl. 3):S1-S155.
9. Pastrana DV, Brennan DC, Cuburu N, Storch GA, Viscidi RP, Randhawa PS, Buck CB. 2012. Neutralization serotyping of BK polyomavirus infection in kidney transplant recipients. PLoS Pathog. 8:e1002650. doi: 10.1371/journal.ppat.1002650.
10. Li C, Diprimio N, Bowles DE, Hirsch ML, Monahan PE, Asokan A, Rabinowitz J, Agbandje-McKenna M, Samulski RJ. 2012. Single amino acid modification of adeno-associated virus capsid changes transduction and humoral immune profiles. J. Virol. 86:7752-7759.
11. Ciarlet M, Hoshino Y, Liprandi F. 1997. Single point mutations may affect the serotype reactivity of serotype G11 porcine rotavirus strains: a widening spectrum? J. Virol. 71:8213-8220.
12. Pastrana DV, Tolstov YL, Becker JC, Moore PS, Chang Y, Buck CB. 2009. Quantitation of human seroresponsiveness to Merkel cell polyomavirus. PLoS Pathog. 5:e1000578. doi:10.1371/journal.ppat.1000578.
13. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
14. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
15. Nishimoto Y, Takasaka T, Hasegawa M, Zheng HY, Chen Q, Sugimoto C, Kitamura T, Yogo Y. 2006. Evolution of BK virus based on complete genome data. J. Mol. Evol. 63:341-352.
16. Sharma PM, Gupta G, Vats A, Shapiro R, Randhawa P. 2006. Phylogenetic analysis of polyomavirus BK sequences. J. Virol. 80:8869-8879.
17. Zheng HY, Nishimoto Y, Chen Q, Hasegawa M, Zhong S, Ikegaya H, Ohno N, Sugimoto C, Takasaka T, Kitamura T, Yogo Y. 2007. Relationships between BK virus lineages and human populations. Microbes Infect. 9:204-213.
18. Pastrana DV, Buck CB, Pang YY, Thompson CD, Castle PE, FitzGerald PC, Kruger Kjaer S, Lowy DR, Schiller JT. 2004. Reactivity of human sera in a sensitive, high-throughput pseudovirus-based papillomavirus neutralization assay for HPV16 and HPV18. Virology 321:205-216.
19. Nakanishi A, Chapellier B, Maekawa N, Hiramoto M, Kuge T, Takahashi RU, Handa H, Imai T. 2008. SV40 vectors carrying minimal sequence of viral origin with exchangeable capsids. Virology 379:110-117.
20. Buck CB, Thompson CD. 2007. Production of papillomavirus-based gene transfer vectors. Curr. Protoc.Cell Biol. Chapter 26:Unit 26.21. doi: 10.1002/0471143030.cb2601s37.
21. Buck CB, Pastrana DV, Lowy DR, Schiller JT. 2004. Efficient intracellular assembly of papillomaviral vectors. J. Virol. 78:751-757.
22. Wyatt RG, Greenberg HB, James WD, Pittman AL, Kalica AR, Flores J, Chanock RM, Kapikian AZ. 1982. Definition of human rotavirus serotypes by plaque reduction assay. Infect. Immun. 37:110-115.
23. Fauquet C, Mayo MA, Maniloff J, Desselberger U, Ball LA (ed). 2005. Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Elsevier/Academic Press, Amsterdam, the Netherlands.
24. Knowles WA, Gibson PE, Gardner SD. 1989. Serological typing scheme for BK-like isolates of human polyomavirus. J. Med. Virol. 28:118-123.
25. Yogo Y, Sugimoto C, Zhong S, Homma Y. 2009. Evolution of the BK polyomavirus: epidemiological, anthropological and clinical implications. Rev. Med. Virol. 19:185-199.
26. Murata H, Teferedegne B, Sheng L, Lewis AM, Jr, Peden K. 2008. Identification of a neutralization epitope in the VP1 capsid protein of SV40. Virology 381:116-122.
27. Dugan AS, Gasparovic ML, Tsomaia N, Mierke DF, O'Hara BA, Manley K, Atwood WJ. 2007. Identification of amino acid residues in BK virus VP1 that are critical for viability and growth. J. Virol. 81:11798-11808.
28. Low JA, Magnuson B, Tsai B, Imperiale MJ. 2006. Identification of gangliosides GD1b and GT1b as receptors for BK virus. J. Virol. 80:1361-1366.
29. Sinibaldi L, Viti D, Goldoni P, Cavallo G, Caroni C, Orsi N. 1987. Inhibition of BK virus haemagglutination by gangliosides. J. Gen. Virol. 68(Part 3):879-883.
30. Schowalter RM, Reinhold WC, Buck CB. 2012. Entry tropism of BK and Merkel cell polyomaviruses in cell culture. PLoS One 7:e42181. doi:10 .1371/journal.pone.0042181.
31. Hoag H. 2013. A universal problem. Nat. Med. 19:12-14.
32. Ichikawa S, Nakajo N, Sakiyama H, Hirabayashi Y. 1994. A mouse B16 melanoma mutant deficient in glycolipids. Proc. Natl. Acad. Sci. U. S. A. 91:2703-2707.
33. Schowalter RM, Pastrana DV, Buck CB. 2011. Glycosaminoglycans and sialylated glycans sequentially facilitate Merkel cell polyomavirus infectious entry. PLoS Pathog. 7:e1002161. doi:10.1371/journal.ppat.1002161.
34. Magaldi TG, Buch MH, Murata H, Erickson KD, Neu U, Garcea RL, Peden K, Stehle T, DiMaio D. 2012. Mutations in the GM1 binding site of simian virus 40 VP1 alter receptor usage and cell tropism. J. Virol. 86:7028-7042.
35. Neu U, Bauer J, Stehle T. 2011. Viruses and sialic acids: rules of engagement. Curr. Opin. Struct. Biol. 21:610-618.
36. O'Donnell CD, Vogel L, Wright A, Das SR, Wrammert J, Li GM, McCausland M, Zheng NY, Yewdell JW, Ahmed R, Wilson PC, Subbarao K. 2012. Antibody pressure by a human monoclonal antibody targeting the 2009 pandemic H1N1 virus hemagglutinin drives the emergence of a virus with increased virulence in mice. mBio 3:e00120-12. doi: 10.1128/mBio.00120-12.
37. Hoffman NG, Cook L, Atienza EE, Limaye AP, Jerome KR. 2008. Markedvariability of BK virus load measurement using quantitative real-time PCR among commonly used assays. J. Clin. Microbiol. 46:2671-2680.
38. Jin L, Gibson PE, Knowles WA, Clewley JP. 1993. BK virus antigenic variants: sequence analysis within the capsid VP1 epitope. J. Med. Virol. 39:50-56.
39. Krumbholz A, Zell R, Egerer R, Sauerbrei A, Helming A, Gruhn B, Wutzler P. 2006. Prevalence of BK virus subtype I in Germany. J. Med. Virol. 78:1588-1598.
40. Randhawa P, Kant J, Shapiro R, Tan H, Basu A, Luo C. 2011. The impact of genomic sequence variability on quantitative polymerase chain reaction assays for the diagnosis of polyomavirus BK infection. J. Clin. Microbiol. 49:4072-4076.
41. Chehadeh W, Nampoory MR. 2013. Genotypic diversity of polyomaviruses circulating among kidney transplant recipients in Kuwait. J. Med. Virol. [Epub ahead of print.] doi:10.1002/jmv.23639.
42. Purtha WE, Tedder TF, Johnson S, Bhattacharya D, Diamond MS. 2011. Memory B cells, but not long-lived plasma cells, possess antigen specificities for viral escape mutants. J. Exp. Med. 208:2599-2606.