High-resolution time-resolved imaging of in vitro Arabidopsis rosette growth

Plant Journal

Volumn 80, Issue 1, 2014, Pages 172-184

  Dhondt, Stijn ^a,b   Gonzalez, Nathalie ^a,b   Blomme, Jonas ^a,b   De Milde, Liesbeth ^a,b   Van Daele, Twiggy ^a,b   Van Akoleyen, Dirk ^a,b   Storme, Veronique ^a,b   Coppens, Frederik ^a,b   Beemster, Gerrit T S ^c   Inzé, Dirk ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c UNIVERSITY OF ANTWERP   (Belgium)

Author keywords

Arabidopsis thaliana; Growth dynamics; Imaging; Leaf movement; Phenotyping platform; Rosette; Technical advance

Indexed keywords

IMAGING TECHNIQUES; PLANTS (BOTANY); ROTATING DISKS;

ARABIDOPSIS THALIANA; GROWTH DYNAMICS; LEAF MOVEMENT; PHENOTYPING; ROSETTE; TECHNICAL ADVANCES;

COMPLEX NETWORKS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS; DEVICES; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; IMAGE PROCESSING; LIGHT; MUTATION; PHENOTYPE; PLANT LEAF; PROCEDURES; RADIATION RESPONSE; SEEDLING; TIME; TRANSGENIC PLANT;

ARABIDOPSIS; GENOTYPE; IMAGE PROCESSING, COMPUTER-ASSISTED; LIGHT; MUTATION; PHENOTYPE; PLANT LEAVES; PLANTS, GENETICALLY MODIFIED; SEEDLING; TIME FACTORS;

EID: 84924812181     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12610     Document Type: Article

References (40)

1. Armengaud, P., Zambaux, K., Hills, A., Sulpice, R., Pattison, R.J., Blatt, M.R. and Amtmann, A. (2009) EZ-RHIZO: integrated software for the fast and accurate measurement of root system architecture. Plant J. 57, 945-956.
2. Arvidsson, S., Perez-Rodriguez, P. and Mueller-Roeber, B. (2011) A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytol. 191, 895-907.
3. Bours, R., Muthuraman, M., Bouwmeester, H. and van der Krol, A. (2012) OSCILLATOR: a system for analysis of diurnal leaf growth using infrared photography combined with wavelet transformation. Plant Methods, 8, 29.
4. Boyer, J.S. (1982) Plant productivity and environment. Science, 218, 443-448.
5. Breuninger, H. and Lenhard, M. (2010) Control of tissue and organ growth in plants. Curr. Top. Dev. Biol. 91, 185-220.
6. Cole, B., Kay, S.A. and Chory, J. (2011) Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. Plant J. 65, 991-1000.
7. De Vylder, J., Vandenbussche, F., Hu, Y., Philips, W. and Van Der Straeten, D. (2012) Rosette Tracker: an open source image analysis tool for automatic quantification of genotype effects. Plant Physiol. 160, 1149-1159.
8. Dhondt, S., Wuyts, N. and Inze, D. (2013) Cell to whole-plant phenotyping: the best is yet to come. Trends Plant Sci. 18, 428-439.
9. Dunnett, C. W. (1980) Pairwise multiple comparisons in the homogeneous variance, unequal sample size case. J. Am. Statist. Assoc. 75, 789-795.
10. Edwards, K.D. and Millar, A.J. (2007) Analysis of circadian leaf movement rhythms in Arabidopsis thaliana. Methods Mol. Biol. 362, 103-113.
11. French, A., Ubeda-Tomas, S., Holman, T.J., Bennett, M.J. and Pridmore, T. (2009) High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol. 150, 1784-1795.
12. Gonzalez, N., De Bodt, S., Sulpice, R. et al. (2010) Increased leaf size: different means to an end. Plant Physiol. 153, 1261-1279.
13. Gonzalez, N., Vanhaeren, H. and Inze, D. (2012) Leaf size control: complex coordination of cell division and expansion. Trends Plant Sci. 17, 332-340.
14. Granier, C., Aguirrezabal, L., Chenu, K. et al. (2006) PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytol. 169, 623-635.
15. Halaban, R. (1968) The circadian rhythm of leaf movement of Coleus blumei x C. frederici, a short day plant. II. The effects of light and temperature signals. Plant Physiol. 43, 1887-1893.
16. Horiguchi, G., Kim, G.-T. and Tsukaya, H. (2005) The transcription factor At-GRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J. 43, 68-78.
17. Iyer-Pascuzzi, A.S., Symonova, O., Mileyko, Y., Hao, Y., Belcher, H., Harer, J., Weitz, J.S. and Benfey, P.N. (2010) Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol. 152, 1148-1157.
18. Jansen, M., Gilmer, F., Biskup, B. et al. (2009) Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance in Arabidopsis thaliana and other rosette plants. Funct. Plant Biol. 36, 902-914.
19. Kenward, M.G. and Roger, J.H. (1997) Small sample inference for fixed effects from restricted maximum likelihood. Biometrics, 53, 983-997.
20. Kheibarshekan Asl, L., Dhondt, S., Boudolf, V., Beemster, G.T.S., Beeckman, T., Inze, D., Govaerts, W. and De Veylder, L. (2011) Model-based analysis of Arabidopsis leaf epidermal cells reveals distinct division and expansion patterns for pavement and guard cells. Plant Physiol. 156, 2172-2183.
21. Leister, D., Varotto, C., Pesaresi, P., Niwergall, A. and Salamini, F. (1999) Large-scale evaluation of plant growth in Arabidopsis thaliana by non-invasive image analysis. Plant Physiol. Biochem. 37, 671-678.
22. Li, Y., Zheng, L., Corke, F., Smith, C. and Bevan, M.W. (2008) Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana. Genes Dev. 22, 1331-1336.
23. Mullen, J.L., Weinig, C. and Hangarter, R.P. (2006) Shade avoidance and the regulation of leaf inclination in Arabidopsis. Plant, Cell Environ. 29, 1099-1106.
24. Nagel, K.A., Putz, A., Gilmer, F. et al. (2012) GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons. Funct. Plant Biol. 39, 891-904.
25. Perez-Perez, J. M., Rubio-Dlaz, S., Dhondt, S., Hernalndez-Romero, D., Salnchez-Soriano, J., Beemster, G. T. S., Ponce, M. R. and Micol, J. L. (2011) Whole organ, venation and epidermal cell morphological variations are correlated in the leaves of Arabidopsis mutants. Plant Cell Environ. 34, 2200-2211.
26. Poire, R., Wiese-Klinkenberg, A., Parent, B., Mielewczik, M., Schurr, U., Tardieu, F. and Walter, A. (2010) Diel time-courses of leaf growth in monocot and dicot species: endogenous rhythms and temperature effects. J. Exp. Bot. 61, 1751-1759.
27. Polko, J.K., van Zanten, M., van Rooij, J.A., Maree, A.F.M., Voesenek, L.A.C.J., Peeters, A.J.M. and Pierik, R. (2012) Ethylene-induced differential petiole growth in Arabidopsis thaliana involves local microtubule reorientation and cell expansion. New Phytol. 193, 339-348.
28. Qi, X., Qi, J. and Wu, Y. (2007) RootLM: a simple color image analysis program for length measurement of primary roots in Arabidopsis. Plant Root, 1, 10-16.
29. Schaalje, G. B., McBride, J. B. and Fellingham, G. W. (2001) Approximations to Distributions of Test Statistics in Complex Mixed Linear Models Using SASR Proc MIXED. SAS Paper 262-26 Presented at SUGI 26.
30. Sidalk, Z. (1967) Rectangular confidence regions for the means of multivariate normal distributions. J. Am. Statist. Assoc. 62, 626-633.
31. Skirycz, A., Claeys, H., De Bodt, S. et al. (2011a) Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest. Plant Cell, 23, 1876-1888.
32. Skirycz, A., Vandenbroucke, K., Clauw, P. et al. (2011b) Survival and growth of Arabidopsis plants given limited water are not equal. Nat. Biotechnol. 29, 212-214.
33. Spartz, A.K., Lee, S.H., Wenger, J.P., Gonzalez, N., Itoh, H., Inze, D., Peer, W.A., Murphy, A.S., Overvoorde, P.J. and Gray, W.M. (2012) The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion. Plant J. 70, 978-990.
34. Tisne, S., Serrand, Y., Bach, L. et al. (2013) Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J. 74, 534-544.
35. Walter, A., Scharr, H., Gilmer, F. et al. (2007) Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: a setup and procedure designed for rapid optical phenotyping of different plant species. New Phytol. 174, 447-455.
36. Wang, L., Uilecan, I.V., Assadi, A.H., Kozmik, C.A. and Spalding, E.P. (2009) HYPOTrace: image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis. Plant Physiol. 149, 1632-1637.
37. White, D.W.R. (2006) PEAPOD regulates lamina size and curvature in Arabidopsis. Proc. Natl Acad. Sci. USA 103, 13238-13243.
38. Wiese, A., Christ, M.M., Virnich, O., Schurr, U. and Walter, A. (2007) Spatio-temporal leaf growth patterns of Arabidopsis thaliana and evidence for sugar control of the diel leaf growth cycle. New Phytol. 174, 752-761.
39. Yang, S., Vanderbeld, B., Wan, J. and Huang, Y. (2010) Narrowing down the targets: towards successful genetic engineering of drought-tolerant crops. Mol. Plant 3, 469-490.
40. Zhang, X., Hause, R.J. Jr and Borevitz, J.O. (2012) Natural genetic variation for growth and development revealed by high-throughput phenotyping in Arabidopsis thaliana. G3, 2, 29-34.