DNA Exit Ramps Are Revealed in the Binding Landscapes Obtained from Simulations in Helical Coordinates

PLoS Computational Biology

Volumn 11, Issue 2, 2015, Pages

  Echeverria, Ignacia ^a   Papoian, Garegin A ^a  

^a University of Maryland   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BINDING ENERGY; BIOINFORMATICS; DNA; FREE ENERGY; MOLECULAR DYNAMICS;

BIOLOGICAL PROCESS; CURVILINEAR COORDINATE SYSTEMS; DNA MOLECULES; DNA SEGMENTS; DYNAMICAL PROCESS; HELICAL COORDINATES; HELICAL SYMMETRY; MINOR GROOVES; SEMIFLEXIBLE POLYMERS; SPATIAL ORGANIZATION;

LIGANDS;

ARGININE DERIVATIVE; DNA; LIGAND; METHYLGUANIDINE; POLYMER; PROTEIN; SODIUM ION; DNA BINDING PROTEIN; SODIUM;

ARTICLE; CONTROLLED STUDY; DNA BINDING; DNA EXIT RAMP; DNA HELIX; DNA SEQUENCE; DNA STRUCTURE; ENERGY TRANSFER; FORCE; GENETIC TRANSCRIPTION; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; RNA TRANSLATION; SIMULATION; CHEMISTRY; CONFORMATION; DNA METHYLATION; METABOLISM; THERMODYNAMICS; ULTRASTRUCTURE;

DNA; DNA METHYLATION; DNA-BINDING PROTEINS; METHYLGUANIDINE; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; SODIUM; THERMODYNAMICS; TRANSCRIPTION, GENETIC;

EID: 84924390104     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003980     Document Type: Article

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