-
1
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel D: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004,116(2):281-297. 10.1016/S0092-8674(04)00045-5
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.1
-
2
-
-
26944495173
-
MicroRNA function in animal development
-
Wienholds E, Plasterk R: MicroRNA function in animal development. FEBS Lett 2005,579(26):5911-5922. 10.1016/j.febslet.2005.07.070
-
(2005)
FEBS Lett
, vol.579
, Issue.26
, pp. 5911-5922
-
-
Wienholds, E.1
Plasterk, R.2
-
3
-
-
70349320158
-
Causes and consequences of microRNA dysregulation in cancer
-
Croce C: Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet 2009,10(10):704-714. 10.1038/nrg2634
-
(2009)
Nat Rev Genet
, vol.10
, Issue.10
, pp. 704-714
-
-
Croce, C.1
-
4
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin G, Croce C: MicroRNA signatures in human cancers. Nat Rev Cancer 2006,6(11):857-866. 10.1038/nrc1997
-
(2006)
Nat Rev Cancer
, vol.6
, Issue.11
, pp. 857-866
-
-
Calin, G.1
Croce, C.2
-
5
-
-
54849408182
-
An analysis of human microRNA and disease associations
-
Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, Cui Q: An analysis of human microRNA and disease associations. PLoS One 2008,3(10):e3420. 10.1371/journal.pone.0003420
-
(2008)
PLoS One
, vol.3
, Issue.10
-
-
Lu, M.1
Zhang, Q.2
Deng, M.3
Miao, J.4
Guo, Y.5
Gao, W.6
Cui, Q.7
-
6
-
-
84868343901
-
The human gene mutation database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution
-
Chapter 1 Unit1.13
-
Stenson PD, Ball EV, Mort M, Phillips AD, Shaw K, Cooper DN: The human gene mutation database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution. Curr Protoc Bioinformatics 2012, Chapter 1:Unit1.13.
-
(2012)
Curr Protoc Bioinformatics
-
-
Stenson, P.D.1
Ball, E.V.2
Mort, M.3
Phillips, A.D.4
Shaw, K.5
Cooper, D.N.6
-
7
-
-
84862805272
-
Comparative analysis of the structural and expressional parameters of microRNA target genes
-
Mok Y, Park S, Choi S: Comparative analysis of the structural and expressional parameters of microRNA target genes. Gene 2012,497(1):103-109. 10.1016/j.gene.2012.01.033
-
(2012)
Gene
, vol.497
, Issue.1
, pp. 103-109
-
-
Mok, Y.1
Park, S.2
Choi, S.3
-
8
-
-
70350113884
-
Abundant conserved microRNA target sites in the 5'-untranslated region and coding sequence
-
Zhou X, Duan X, Qian J, Li F: Abundant conserved microRNA target sites in the 5'-untranslated region and coding sequence. Genetica 2009,137(2):159-164. 10.1007/s10709-009-9378-7
-
(2009)
Genetica
, vol.137
, Issue.2
, pp. 159-164
-
-
Zhou, X.1
Duan, X.2
Qian, J.3
Li, F.4
-
9
-
-
70350469040
-
The relationship between the evolution of microRNA targets and the length of their UTRs.
-
BMC Genomics
-
Cheng C, Bhardwaj N, Gerstein M: The relationship between the evolution of microRNA targets and the length of their UTRs. BMC Genomics 2009., 10:
-
(2009)
-
-
Cheng, C.1
Bhardwaj, N.2
Gerstein, M.3
-
10
-
-
38449119517
-
Gene duplication: a drive for phenotypic diversity and cause of human disease
-
Conrad B, Antonarakis S: Gene duplication: a drive for phenotypic diversity and cause of human disease. Annu Rev Genomics Hum Genet 2007, 8:17-35. 10.1146/annurev.genom.8.021307.110233
-
(2007)
Annu Rev Genomics Hum Genet
, vol.8
, pp. 17-35
-
-
Conrad, B.1
Antonarakis, S.2
-
11
-
-
84879690363
-
Complex-forming proteins escape the robust regulations of miRNA in human
-
Das J, Chakraborty S, Podder S, Ghosh T: Complex-forming proteins escape the robust regulations of miRNA in human. FEBS Lett 2013,587(14):2284-2287. 10.1016/j.febslet.2013.05.062
-
(2013)
FEBS Lett
, vol.587
, Issue.14
, pp. 2284-2287
-
-
Das, J.1
Chakraborty, S.2
Podder, S.3
Ghosh, T.4
-
12
-
-
0038586458
-
Evolutionary dynamics of oncogenes and tumor suppressor genes: Higher intensities of purifying selection than other genes
-
Thomas M, Weston B, Joseph M, Wu W, Nekrutenko A, Tonellato P: Evolutionary dynamics of oncogenes and tumor suppressor genes: Higher intensities of purifying selection than other genes. Mol Biol Evol 2003,20(6):964-968. 10.1093/molbev/msg110
-
(2003)
Mol Biol Evol
, vol.20
, Issue.6
, pp. 964-968
-
-
Thomas, M.1
Weston, B.2
Joseph, M.3
Wu, W.4
Nekrutenko, A.5
Tonellato, P.6
-
13
-
-
84868154284
-
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels
-
Pai A, Cain C, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras J, Degner J, Gaffney D, Pickrell J, Stephens M, Pritchard JK, Gilad Y: The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. PLoS Genet 2012,8(10):e1003000. 10.1371/journal.pgen.1003000
-
(2012)
PLoS Genet
, vol.8
, Issue.10
-
-
Pai, A.1
Cain, C.2
Mizrahi-Man, O.3
De Leon, S.4
Lewellen, N.5
Veyrieras, J.6
Degner, J.7
Gaffney, D.8
Pickrell, J.9
Stephens, M.10
Pritchard, J.K.11
Gilad, Y.12
-
14
-
-
20044388720
-
Involvement of MicroRNA in AU-rich element-mediated mRNA instability
-
Jing Q, Huang S, Guth S, Zarubin T, Motoyama A, Chen J, Di Padova F, Lin S, Gram H, Han J: Involvement of MicroRNA in AU-rich element-mediated mRNA instability. Cell 2005,120(5):623-634. 10.1016/j.cell.2004.12.038
-
(2005)
Cell
, vol.120
, Issue.5
, pp. 623-634
-
-
Jing, Q.1
Huang, S.2
Guth, S.3
Zarubin, T.4
Motoyama, A.5
Chen, J.6
Di Padova, F.7
Lin, S.8
Gram, H.9
Han, J.10
-
15
-
-
79955581917
-
MicroRNAs and epigenetics
-
Sato F, Tsuchiya S, Meltzer S, Shimizu K: MicroRNAs and epigenetics. FEBS J 2011,278(10):1598-1609. 10.1111/j.1742-4658.2011.08089.x
-
(2011)
FEBS J
, vol.278
, Issue.10
, pp. 1598-1609
-
-
Sato, F.1
Tsuchiya, S.2
Meltzer, S.3
Shimizu, K.4
-
16
-
-
34247540446
-
Epigenetics and microRNAs
-
Chuang J, Jones P: Epigenetics and microRNAs. Pediatr Res 2007,61(5):24R-29R.
-
(2007)
Pediatr Res
, vol.61
, Issue.5
, pp. 24R-29R
-
-
Chuang, J.1
Jones, P.2
-
17
-
-
40649111338
-
Non-coding RNAs, epigenetics and complexity
-
Costa F: Non-coding RNAs, epigenetics and complexity. Gene 2008,410(1):9-17. 10.1016/j.gene.2007.12.008
-
(2008)
Gene
, vol.410
, Issue.1
, pp. 9-17
-
-
Costa, F.1
-
18
-
-
30744441602
-
A single determinant dominates the rate of yeast protein evolution
-
Drummond D, Raval A, Wilke C: A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol 2006,23(2):327-337.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.2
, pp. 327-337
-
-
Drummond, D.1
Raval, A.2
Wilke, C.3
-
19
-
-
33644768174
-
Control of translation and mRNA degradation by miRNAs and siRNAs
-
Valencia-Sanchez M, Liu J, Hannon G, Parker R: Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev 2006,20(5):515-524. 10.1101/gad.1399806
-
(2006)
Genes Dev
, vol.20
, Issue.5
, pp. 515-524
-
-
Valencia-Sanchez, M.1
Liu, J.2
Hannon, G.3
Parker, R.4
-
20
-
-
0038692119
-
Human housekeeping genes are compact
-
Eisenberg E, Levanon E: Human housekeeping genes are compact. Trends Genet 2003,19(7):362-365. 10.1016/S0168-9525(03)00140-9
-
(2003)
Trends Genet
, vol.19
, Issue.7
, pp. 362-365
-
-
Eisenberg, E.1
Levanon, E.2
-
21
-
-
84864052594
-
Patterns of evolutionary conservation of essential genes correlate with their compensability
-
Bergmiller T, Ackermann M, Silander O: Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genet 2012,8(6):e1002803. 10.1371/journal.pgen.1002803
-
(2012)
PLoS Genet
, vol.8
, Issue.6
-
-
Bergmiller, T.1
Ackermann, M.2
Silander, O.3
-
22
-
-
77957355926
-
Epigenetics and miRNAs in human cancer
-
Fabbri M, Calin G, Herceg Z, Ushijima T: Epigenetics and miRNAs in human cancer. Epigenetics Cancer Pt A 2010, 70:87-99.
-
(2010)
Epigenetics Cancer Pt A
, vol.70
, pp. 87-99
-
-
Fabbri, M.1
Calin, G.2
Herceg, Z.3
Ushijima, T.4
-
23
-
-
77149125896
-
Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information
-
Zhang Y, De S, Garner J, Smith K, Wang S, Becker K: Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information. BMC Med Genomics 2010, 3:1. 10.1186/1755-8794-3-1
-
(2010)
BMC Med Genomics
, vol.3
, pp. 1
-
-
Zhang, Y.1
De, S.2
Garner, J.3
Smith, K.4
Wang, S.5
Becker, K.6
-
24
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B, Burge C, Bartel D: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005,120(1):15-20. 10.1016/j.cell.2004.12.035
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.1
Burge, C.2
Bartel, D.3
-
25
-
-
84862176128
-
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
-
Vergoulis T, Vlachos I, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou A: TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res 2012,40(D1):D222-D229. 10.1093/nar/gkr1161
-
(2012)
Nucleic Acids Res
, vol.40 D
, Issue.1
, pp. D222-D229
-
-
Vergoulis, T.1
Vlachos, I.2
Alexiou, P.3
Georgakilas, G.4
Maragkakis, M.5
Reczko, M.6
Gerangelos, S.7
Koziris, N.8
Dalamagas, T.9
Hatzigeorgiou, A.10
-
26
-
-
80455154984
-
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
-
Garcia D, Baek D, Shin C, Bell G, Grimson A, Bartel D: Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nat Struct Mol Biol 2011,18(10):1139-1146. 10.1038/nsmb.2115
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.10
, pp. 1139-1146
-
-
Garcia, D.1
Baek, D.2
Shin, C.3
Bell, G.4
Grimson, A.5
Bartel, D.6
-
27
-
-
84859865967
-
The UCSC genome browser database: extensions and updates 2011
-
Dreszer T, Karolchik D, Zweig A, Hinrichs A, Raney B, Kuhn R, Meyer L, Wong M, Sloan C, Rosenbloom K, Roe G, Rhead B, Pohl A, Malladi VS, Li CH, Learned K, Kirkup V, Hsu F, Harte RA, Guruvadoo L, Goldman M, Giardine BM, Fujita PA, Diekhans M, Cline MS, Clawson H, Barber GP, Haussler D, James Kent W: The UCSC genome browser database: extensions and updates 2011. Nucleic Acids Res 2012,40(D1):D918-D923. 10.1093/nar/gkr1055
-
(2012)
Nucleic Acids Res
, vol.40 D
, Issue.1
, pp. D918-D923
-
-
Dreszer, T.1
Karolchik, D.2
Zweig, A.3
Hinrichs, A.4
Raney, B.5
Kuhn, R.6
Meyer, L.7
Wong, M.8
Sloan, C.9
Rosenbloom, K.10
Roe, G.11
Rhead, B.12
Pohl, A.13
Malladi, V.S.14
Li, C.H.15
Learned, K.16
Kirkup, V.17
Hsu, F.18
Harte, R.A.19
Guruvadoo, L.20
Goldman, M.21
Giardine, B.M.22
Fujita, P.A.23
Diekhans, M.24
Cline, M.S.25
Clawson, H.26
Barber, G.P.27
Haussler, D.28
James Kent, W.29
more..
-
28
-
-
84875608234
-
The UCSC genome browser and associated tools
-
Kuhn R, Haussler D, Kent W: The UCSC genome browser and associated tools. Brief Bioinform 2013,14(2):144-161. 10.1093/bib/bbs038
-
(2013)
Brief Bioinform
, vol.14
, Issue.2
, pp. 144-161
-
-
Kuhn, R.1
Haussler, D.2
Kent, W.3
-
29
-
-
84875391572
-
Ensembl 2013
-
Flicek P, Ahmed I, Amode M, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, García-Girón C, Gordon L, Hourlier T, Hunt S, Juettemann T, Kähäri AK, Keenan S, Komorowska M, Kulesha E, Longden I, Maurel T, McLaren WM, Muffato M, Nag R, Overduin B, Pignatelli M, Pritchard B, Pritchard E, et al.: Ensembl 2013. Nucleic Acids Res 2013,41(D1):D48-D55. 10.1093/nar/gks1236
-
(2013)
Nucleic Acids Res
, vol.41 D
, Issue.1
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
Fitzgerald, S.11
Gil, L.12
García-Girón, C.13
Gordon, L.14
Hourlier, T.15
Hunt, S.16
Juettemann, T.17
Kähäri, A.K.18
Keenan, S.19
Komorowska, M.20
Kulesha, E.21
Longden, I.22
Maurel, T.23
McLaren, W.M.24
Muffato, M.25
Nag, R.26
Overduin, B.27
Pignatelli, M.28
Pritchard, B.29
Pritchard, E.30
more..
-
30
-
-
84887499256
-
Analysis of microRNA-target interactions across diverse cancer types
-
Jacobsen A, Silber J, Harinath G, Huse J, Schultz N, Sander C: Analysis of microRNA-target interactions across diverse cancer types. Nat Struct Mol Biol 2013,20(11):1325-1332. 10.1038/nsmb.2678
-
(2013)
Nat Struct Mol Biol
, vol.20
, Issue.11
, pp. 1325-1332
-
-
Jacobsen, A.1
Silber, J.2
Harinath, G.3
Huse, J.4
Schultz, N.5
Sander, C.6
-
31
-
-
84857481099
-
Genome-wide assessment of AU-rich elements by the AREScore algorithm.
-
Spasic M, Friedel C, Schott J, Kreth J, Leppek K, Hofmann S, Ozgur S, Stoecklin G: Genome-wide assessment of AU-rich elements by the AREScore algorithm. PLoS Genet 2012.,8(1):
-
(2012)
PLoS Genet
, vol.8
, Issue.1
-
-
Spasic, M.1
Friedel, C.2
Schott, J.3
Kreth, J.4
Leppek, K.5
Hofmann, S.6
Ozgur, S.7
Stoecklin, G.8
-
32
-
-
75549084321
-
HHMD: the human histone modification database
-
Zhang Y, Lv J, Liu H, Zhu J, Su J, Wu Q, Qi Y, Wang F, Li X: HHMD: the human histone modification database. Nucleic Acids Res 2010, 38:D149-D154. 10.1093/nar/gkp968
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D149-D154
-
-
Zhang, Y.1
Lv, J.2
Liu, H.3
Zhu, J.4
Su, J.5
Wu, Q.6
Qi, Y.7
Wang, F.8
Li, X.9
-
33
-
-
78651291113
-
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data
-
Hackenberg M, Barturen G, Oliver J: NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data. Nucleic Acids Res 2011, 39:D75-D79. 10.1093/nar/gkq942
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D75-D79
-
-
Hackenberg, M.1
Barturen, G.2
Oliver, J.3
-
34
-
-
84858829389
-
The elements of statistical learning: data mining, inference and prediction
-
Marcoulides G: The elements of statistical learning: data mining, inference and prediction. Struct Equ Modeling 2004,11(1):150-151. 10.1207/S15328007SEM1101_10
-
(2004)
Struct Equ Modeling
, vol.11
, Issue.1
, pp. 150-151
-
-
Marcoulides, G.1
|