Expression of BKV and JCV encoded microRNA in human cerebrospinal fluid, plasma and urine

Journal of Clinical Virology

Volumn 65, Issue , 2015, Pages 1-5

  Pietilä, Tuuli ^a,b   Nummi, Maaret ^a   Auvinen, Petri ^a   Mannonen, Laura ^a   Auvinen, Eeva ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b Metropolilab   (Finland)

Author keywords

BKV; JCV; Laboratory diagnostics; MicroRNA

Indexed keywords

MICRORNA; MICRORNA 122 5P; MICRORNA 126 3P; MICRORNA 19A 3P; MICRORNA 19B 3P; MICRORNA 20B 5P; MICRORNA 22 3P; MICRORNA B1 3P; MICRORNA B1 5P; MICRORNA J1 3P; MICRORNA J1 5P; UNCLASSIFIED DRUG; VIRUS DNA; BIOLOGICAL MARKER; VIRUS RNA;

ARTICLE; BK VIRUS; CEREBROSPINAL FLUID; CONTROLLED STUDY; DISEASE ASSOCIATION; DOWN REGULATION; GENE EXPRESSION REGULATION; HUMAN; JC VIRUS; LABORATORY DIAGNOSIS; MICROARRAY ANALYSIS; NONHUMAN; PLASMA; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; UPREGULATION; URINE; VIRUS LOAD; BLOOD; GENETICS; ISOLATION AND PURIFICATION; NUCLEOTIDE SEQUENCE; PILOT STUDY; POLYMERASE CHAIN REACTION; POLYOMAVIRUS INFECTIONS; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; TUMOR VIRUS INFECTIONS; VIROLOGY;

BASE SEQUENCE; BIOMARKERS; BK VIRUS; HUMANS; JC VIRUS; MICROARRAY ANALYSIS; MICRORNAS; PILOT PROJECTS; POLYMERASE CHAIN REACTION; POLYOMAVIRUS INFECTIONS; REAL-TIME POLYMERASE CHAIN REACTION; RNA, VIRAL; TUMOR VIRUS INFECTIONS; VIRAL LOAD;

EID: 84924288494     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2015.01.019     Document Type: Article

References (41)

1. Gardner S.D., Field A.M., Coleman D.V., Hulme B. New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet 1971, 1:1253-1257.
2. Ramos E., Drachenberg C.B., Wali R., Hirsch H.H. The decade of polyomavirus BK-associated nephropathy: state of affairs. Transplantation 2009, 87:621-630.
3. Gorczynska E., Turkiewicz D., Rybka K., Toporski J., Kalwak K., Dyla A., Szczyra Z., Chybicka A. Incidence, clinical outcome, and management of virus-induced hemorrhagic cystitis in children and adolescents after allogeneic hematopoietic cell transplantation. Biol. Blood Marrow Transplant. 2005, 11:797-804.
4. Lautenschlager I., Jahnukainen T., 'Kardas P., Lohi J., Auvinen E., Mannonen L., Dumoulin A., Hirsch H.H., Jalanko H. A case of primary JC polyomavirus infection-associated nephropathy. American Journal of Transplantation 2014, 14:2887-2892.
5. Padgett B.L., Walker D.L., ZuRhein G.M., Ackroade R.J., Dessel B.H. Cultivation of a papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1971, 1:1257-1260.
6. Tan C.S., Ellis L.C., Wüthrich C., Ngo L., Broge T.A., Saint-Aubyn J., Miller J.S., Koralnik I.J. JC virus latency in the brain and extraneural organs of patients with and without progressive multifocal leukoencephalopathy. J. Virol. 2010, 84:9200-9209.
7. Bloomgren G., Richman S., Hotermans C., Subramanyam M., Goelz S., Natarajan A., Lee S., Plavina T., Scanlon J.V., Sandrock A., Bozic C. Risk of natalizumab-associated progressive multifocal leukoencephalopathy. N. Engl. J. Med. 2012, 366:1870-1880.
8. Molloy E.S., Calabrese L.H. Progressive multifocal leukoencephalopathy associated with immunosuppressive therapy in rheumatic diseases: evolving role of biologic therapies. Arthritis Rheumatol. 2012, 64:3043-3051.
9. Verbeeck J., Van Assche G., Ryding J., Wollants E., Rans K., Vermeire S., Pourkarim M.R., Noman M., Dillner J., Van Ranst M., Rutgeerts P. JC viral loads in patients with Crohn's disease treated with immunosuppression: can we screen for elevated risk of progressive multifocal leukoencephalopathy?. Gut 2008, 57:1393-1397.
10. Egli A., Infanti L., Dumoulin A., Buser A., Samaridis J., Stebler C., Gosert R., Hirsch H.H. Prevalence of polyomavirus BK and JC infection and replication in 400 healthy blood donors. J. Infect. Dis. 2009, 199:837-846.
11. Kean J.M., Rao S., Wang M., Garcea R.L. Seroepidemiology of human polyomaviruses. PLoS Pathog. 2009, 5:e1000363.
12. Hirsch H.H., Babel N., Comoli P., Friman V., Ginevri F., Jardine A., Lautenschlager I., Legendre C., Midtvedt K., Muñoz P., Randhawa P., Rinaldo C.H., Wieszek A. ESCMID study group of infection in compromised hosts (ESGICH). European perspective on human polyomavirus infection, replication and disease in solid organ transplantation. Clin. Microbiol. Infect. 2014, 20(S7):74-88.
13. Mentzer D., Prestel J., Adams O., Gold R., Hartung H.P., Hengel H., Kieseier B.C., Ludwig W.D., Keller-Stanislawski B. Case definition for progressive multifocal leukoencephalopathy following treatment with monoclonal antibodies. J. Neurol. Neurosurg. Psychiatry 2012, 83:927-933.
14. Bozic C., Richman S., Plavina T., Natarajan A., Scanlon J.V., Subramanyam M., Sandrock A., Bloomgren G. Anti-John Cunnigham virus antibody prevalence in multiple sclerosis patients: baseline results of STRATIFY-1. Ann. Neurol. 2011, 70:742-750.
15. Bartels C.L., Tsongalis G.J. MicroRNAs novel biomarkers for human cancer. Clin. Chem. 2009, 55:623-631.
16. Lee S., Paulson K.G., Murchison E.P., Afanasiev O.K., Alkan C., Leonard J.H., Byrd D.R., Hannon G.J., Nghiem P. Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas. J. Clin. Virol. 2011, 52:272-275.
17. Seo G.J., Chen C.J., Sullivan C.S. Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression. Virology 2009, 383:183-187.
18. Seo G.J., Fink L.H.L., O'Hara B., Atwood W.J., Sullivan C.S. Evolutionarily conserved function of a viral microRNA. J. Virol. 2008, 82:9823-9828.
19. Bauman Y., Nachmani D., Vitenshtein A., Tsukerman P., Drayman N., Stern-Ginossar N., Lankry D., Gruda R., Mandelboim O. An identical miRNA of the human JC and BK polyoma viruses targets the stress-induced ligand ULBP3 to escape immune elimination. Cell Host Microbe 2011, 9:93-102.
20. Qian K., Pietilä T., Rönty M., Michon F., Frilander M.J., Ritari J., Tarkkanen J., Paulín L., Auvinen P., Auvinen E. Identification and validation of human papillomavirus encoded microRNAs. PLoS One 2013, 8:e70202.
21. Hirsch H.H., Mohaupt M., Klimkait T. Prospective monitoring of BK virus load after discontinuing sirolimus treatment in a renal transplant patient with BK virus nephropathy. J. Infect. Dis. 2001, 184:1494-1495.
22. Dumoulin A., Hirsch H.H. Reevaluating and optimizing polyomavirus BK and JC real-time PCR assays to detect rare sequence polymorphisms. J. Clin. Microbiol. 2011, 49:1382-1388.
23. Kroh E.M., Parkin R.K., Mitchell P.S., Tewari M. Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR). Methods 2010, 50:298-301.
24. Hauser S., Wulfken L.M., Holdenrieder S., Moritz R., Ohlmann C.H., Jung V., Becker F., Herrmann E., Walgenbach-Brünagel G., von Ruecker A., Müller S.C., Ellinger J. Analysis of serum microRNAs (miR-26a-2*, miR-191, miR-337-3p and miR-378) as potential biomarkers in renal cell carcinoma. Cancer Epidemiol. 2012, 36:391-394.
25. Fleischhacker M., Schmidt B. Free circulating nucleic acids in plasma and serum (CNAPS)-useful for the detection of lung cancer patients. Cancer Biomark. 2009, 6:211-219.
26. Hébert S.S., Horré K., Nicolaï L., Papadopoulou A.S., Mandemakers W., Silahtaroglu A.N., Kauppinen S., Delacourte A., De Strooper B. Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:6415-6420.
27. Cox M.B., Cairns M.J., Gandhi K.S., Carroll A.P., Moscovis S., Stewart G.J., Broadley S., Scott R.J., Booth D.R., Lechner-Scott J. ANZgene Multiple Sclerosis Genetics Consortium: microRNAs miR-17 and miR-20a inhibit T cell activation genes and are under-expressed in MS whole blood. PLoS One 2010, 5:e12132.
28. Guo J., Miao Y., Xiao B., Huan R., Jiang Z., Meng D., Wang Y. Differential expression of microRNA species in human gastric cancer versus non-tumorous tissues. J. Gastroenterol. Hepatol. 2009, 24:652-657.
29. Keller A., Leidinger P., Steinmeyer F., Stähler C., Franke A., Hemmrich-Stanisak G., Kappel A., Wright I., Dörr J., Paul F., Diem R., Tocariu-Krick B., Meder B., Backes C., Meese E., Ruprecht K. Comprehensive analysis of microRNA profiles in multiple sclerosis including next-generation sequencing. Mult. Scler. 2014, 20:295-303.
30. Motoyama K., Inoue H., Takatsuno Y., Tanaka F., Mimori K., Uetake H., Sugihara K., Mori M. Over- and under-expressed microRNAs in human colorectal cancer. Int. J. Oncol. 2009, 34:1069-1075.
31. Volinia S., Calin G.A., Liu C.G., Ambs S., Cimmino A., Petrocca F., Visone R., Iorio M., Roldo C., Ferracin M., Prueitt R.L., Yanaihara N., Lanza G., Scarpa A., Vecchione A., Negrini M., Harris C.C., Croce C.M. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:2257-2261.
32. Xu Q., Dong Q.G., Sun L., He C., Yuan Y. Expression of serum miR-20a-5p, let-7a, and miR-320a and their correlations with pepsinogen in atrophic gastritis and gastric cancer: a case-control study. BMC Clin. Pathol. 2013, 13:11.
33. Yan S., Wang J., Zhang W., Dai J. Circulating microRNA profiles altered in mice after 28 days exposure to perfluorooctanoic acid. Toxicol. Lett. 2014, 224:24-31.
34. Fish J.E., Santoro M.M., Morton S.U., Yu S., Yeh R.F., Wythe J.D., Ivey K.N., Bruneau B.G., Stainier D.Y., Srivastava D. miR-126 regulates angiogenic signaling and vascular integrity. Dev. Cell 2008, 15:272-284.
35. Jin W., Ibeagha-Awemu E.M., Liang G., Beaudoin F., Zhao X., Guan L.L. Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. BMC Genomics 2014, 15:181.
36. Link A., Balaguer F., Nagasaka T., Boland C.R., Goel A. MicroRNA miR-J1-5p as a potential biomarker for JC virus infection in the gastrointestinal tract. PLoS One 2014, 9:e100036.
37. Lagatie O., Van Loy T., Tritsmans L., Stuyver L.J. Viral miRNAs in plasma and urine divulge JC polyomavirus infetion. Virol. J. 2014, 11:158.
38. Li J.Y.Z., McNicholas K., Yong T.Y., Rao N., Coates P.T., Higgins G.D., Carroll R.P., Woodman R.J., Michael M.Z., Gleadle J.M. BK virus encoded microRNAs are present in blood of renal transplant recipients with BK viral nephropathy. Am. J. Transplant. 2014, 14:1183-1190.
39. Tian Y.C., Li Y.J., Chen H.C., Wu H.H., Weng C.H., Chen Y.C., Lee C.C., Chang M.Y., Hsu H.H., Yen T.H., Hung C.C., Yang C.W. Polyomavirus BK-encoded microRNA suppresses autoregulation of viral replication. Biochem. Biophys. Res. Commun. 2014, 447:543-549.
40. Houben R., Shuda M., Weinkam R., Schrama D., Feng H., Chang Y., Moore P.S., Becker J.C. Merkel cell polyomavirus infected Merkel cell carcinoma cells require expression of viral T antigens. J. Virol. 2010, 84:7064-7072.
41. Lagatie O., Van Loy T., Tritsmans L., Stuyver L.J. Circulating human microRNAs are not linked to JC polyomavirus serology or urinary viral load in healthy subjects. Virol. J. 2014, 11:41.