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Volumn 12, Issue 1, 2015, Pages

A molecular switch in immunodominant HIV-1-specific CD8 T-cell epitopes shapes differential HLA-restricted escape

Author keywords

HIV 1*CD8+ T Cells; pHLA structure; Viral escape

Indexed keywords

EPITOPE; GAG PROTEIN; GAG PROTEIN (180-188); HLA ANTIGEN CLASS 1; HLA B ANTIGEN; NEF PROTEIN; NEF PROTEIN (71-79); UNCLASSIFIED DRUG; HUMAN IMMUNODEFICIENCY VIRUS ANTIGEN;

EID: 84924198550     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/s12977-015-0149-5     Document Type: Article
Times cited : (36)

References (30)
  • 1
    • 23944489940 scopus 로고    scopus 로고
    • HLA genomics in the third millennium
    • Trowsdale J. HLA genomics in the third millennium. Curr Opin Immunol. 2005;17:498-504.
    • (2005) Curr Opin Immunol , vol.17 , pp. 498-504
    • Trowsdale, J.1
  • 2
    • 0029855347 scopus 로고    scopus 로고
    • Structure of the complex between human T-cell receptor, viral peptide and HLA-A2
    • Garboczi DN, Ghosh P, Utz U, Fan QR, Biddison WE, Wiley DC. Structure of the complex between human T-cell receptor, viral peptide and HLA-A2. Nature. 1996;384:134-41.
    • (1996) Nature , vol.384 , pp. 134-141
    • Garboczi, D.N.1    Ghosh, P.2    Utz, U.3    Fan, Q.R.4    Biddison, W.E.5    Wiley, D.C.6
  • 3
    • 0035978824 scopus 로고    scopus 로고
    • Effect of a single amino acid change in MHC class I molecules on the rate of progression to AIDS
    • Gao X, Nelson GW, Karacki P, Martin MP, Phair J, Kaslow R, et al. Effect of a single amino acid change in MHC class I molecules on the rate of progression to AIDS. N Engl J Med. 2001;344:1668-75.
    • (2001) N Engl J Med , vol.344 , pp. 1668-1675
    • Gao, X.1    Nelson, G.W.2    Karacki, P.3    Martin, M.P.4    Phair, J.5    Kaslow, R.6
  • 4
    • 70349565594 scopus 로고    scopus 로고
    • Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response
    • Geldmacher C, Metzler IS, Tovanabutra S, Asher TE, Gostick E, Ambrozak DR, et al. Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response. Blood. 2009;114:1553-62.
    • (2009) Blood , vol.114 , pp. 1553-1562
    • Geldmacher, C.1    Metzler, I.S.2    Tovanabutra, S.3    Asher, T.E.4    Gostick, E.5    Ambrozak, D.R.6
  • 5
    • 84866490075 scopus 로고    scopus 로고
    • HIV and HLA class I: an evolving relationship
    • Goulder PJ, Walker BD. HIV and HLA class I: an evolving relationship. Immunity. 2012;37:426-40.
    • (2012) Immunity , vol.37 , pp. 426-440
    • Goulder, P.J.1    Walker, B.D.2
  • 6
    • 0036893174 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 (HIV-1)-specific CD8 + -T-cell responses for groups of HIV-1-infected individuals with different HLA-B*35 genotypes
    • Jin X, Gao X, Ramanathan Jr M, Deschenes GR, Nelson GW, O'Brien SJ, et al. Human immunodeficiency virus type 1 (HIV-1)-specific CD8 + -T-cell responses for groups of HIV-1-infected individuals with different HLA-B*35 genotypes. J Virol. 2002;76:12603-10.
    • (2002) J Virol , vol.76 , pp. 12603-12610
    • Jin, X.1    Gao, X.2    Ramanathan, M.3    Deschenes, G.R.4    Nelson, G.W.5    O'Brien, S.J.6
  • 8
    • 84856861433 scopus 로고    scopus 로고
    • HLA-B*57 micropolymorphism shapes1 in HIV-1 infe HLA allele-specific epitope immunogenicity, selection pressure, and HIV immune control
    • Kloverpris HN, Stryhn A, Harndahl M, van der Stok M, Payne RP, Matthews PC, et al. HLA-B*57 micropolymorphism shapes HLA allele-specific epitope immunogenicity, selection pressure, and HIV immune control. J Virol. 2012;86:919-29.
    • (2012) J Virol , vol.86 , pp. 919-929
    • Kloverpris, H.N.1    Stryhn, A.2    Harndahl, M.3    Stok, M.4    Payne, R.P.5    Matthews, P.C.6
  • 9
    • 84861325273 scopus 로고    scopus 로고
    • Widespread impact of HLA restriction on immune control and escape pathways of HIV-1
    • Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, et al. Widespread impact of HLA restriction on immune control and escape pathways of HIV-1. J Virol. 2012;86:5230-43.
    • (2012) J Virol , vol.86 , pp. 5230-5243
    • Carlson, J.M.1    Listgarten, J.2    Pfeifer, N.3    Tan, V.4    Kadie, C.5    Walker, B.D.6
  • 10
    • 50149117938 scopus 로고    scopus 로고
    • Central role of reverting mutations in HLA associations with human immunodeficiency virus set point
    • Matthews PC, Prendergast A, Leslie A, Crawford H, Payne R, Rousseau C, et al. Central role of reverting mutations in HLA associations with human immunodeficiency virus set point. J Virol. 2008;82:8548-59.
    • (2008) J Virol , vol.82 , pp. 8548-8559
    • Matthews, P.C.1    Prendergast, A.2    Leslie, A.3    Crawford, H.4    Payne, R.5    Rousseau, C.6
  • 11
    • 0034034277 scopus 로고    scopus 로고
    • Differential narrow focusing of immunodominant human immunodeficiency virus gag-specific cytotoxic T-lymphocyte responses in infected African and caucasoid adults and children
    • Goulder PJ, Brander C, Annamalai K, Mngqundaniso N, Govender U, Tang Y, et al. Differential narrow focusing of immunodominant human immunodeficiency virus gag-specific cytotoxic T-lymphocyte responses in infected African and caucasoid adults and children. J Virol. 2000;74:5679-90.
    • (2000) J Virol , vol.74 , pp. 5679-5690
    • Goulder, P.J.1    Brander, C.2    Annamalai, K.3    Mngqundaniso, N.4    Govender, U.5    Tang, Y.6
  • 12
    • 33645765507 scopus 로고    scopus 로고
    • Motif inference reveals optimal CTL epitopes presented by HLA class I alleles highly prevalent in southern Africa
    • Honeyborne I, Rathod A, Buchli R, Ramduth D, Moodley E, Rathnavalu P, et al. Motif inference reveals optimal CTL epitopes presented by HLA class I alleles highly prevalent in southern Africa. J Immunol. 2006;176:4699-705.
    • (2006) J Immunol , vol.176 , pp. 4699-4705
    • Honeyborne, I.1    Rathod, A.2    Buchli, R.3    Ramduth, D.4    Moodley, E.5    Rathnavalu, P.6
  • 14
    • 10644267588 scopus 로고    scopus 로고
    • Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA
    • Kiepiela P, Leslie AJ, Honeyborne I, Ramduth D, Thobakgale C, Chetty S, et al. Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA. Nature. 2004;432:769-75.
    • (2004) Nature , vol.432 , pp. 769-775
    • Kiepiela, P.1    Leslie, A.J.2    Honeyborne, I.3    Ramduth, D.4    Thobakgale, C.5    Chetty, S.6
  • 16
    • 77956827161 scopus 로고    scopus 로고
    • Additive contribution of HLA class I alleles in the immune control of HIV-1 infection
    • Leslie A, Matthews PC, Listgarten J, Carlson JM, Kadie C, Ndung'u T, et al. Additive contribution of HLA class I alleles in the immune control of HIV-1 infection. J Virol. 2010;84:9879-88.
    • (2010) J Virol , vol.84 , pp. 9879-9888
    • Leslie, A.1    Matthews, P.C.2    Listgarten, J.3    Carlson, J.M.4    Kadie, C.5    Ndung'u, T.6
  • 17
    • 33749137810 scopus 로고    scopus 로고
    • Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype
    • Leslie A, Price DA, Mkhize P, Bishop K, Rathod A, Day C, et al. Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype. J Immunol. 2006;177:4699-708.
    • (2006) J Immunol , vol.177 , pp. 4699-4708
    • Leslie, A.1    Price, D.A.2    Mkhize, P.3    Bishop, K.4    Rathod, A.5    Day, C.6
  • 19
    • 0034057892 scopus 로고    scopus 로고
    • Rfree and the rfree ratio. II. Calculation of the expected values and variances of cross-validation statistics in macromolecular least-squares refinement
    • Tickle IJ, Laskowski RA, Moss DS. Rfree and the rfree ratio. II. Calculation of the expected values and variances of cross-validation statistics in macromolecular least-squares refinement. Acta Crystallogr D Biol Crystallogr. 2000;56:442-50.
    • (2000) Acta Crystallogr D Biol Crystallogr , vol.56 , pp. 442-450
    • Tickle, I.J.1    Laskowski, R.A.2    Moss, D.S.3
  • 20
    • 70350438026 scopus 로고    scopus 로고
    • Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor
    • Cole DK, Yuan F, Rizkallah PJ, Miles JJ, Gostick E, Price DA, et al. Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor. J Biol Chem. 2009;284:27281-9.
    • (2009) J Biol Chem , vol.284 , pp. 27281-27289
    • Cole, D.K.1    Yuan, F.2    Rizkallah, P.J.3    Miles, J.J.4    Gostick, E.5    Price, D.A.6
  • 21
    • 77957195721 scopus 로고    scopus 로고
    • Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B*2705-restricted CD8+ T cells
    • Payne RP, Kloverpris H, Sacha JB, Brumme Z, Brumme C, Buus S, et al. Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B*57.
    • (2010) J Virol , vol.84 , pp. 10543-10557
    • Payne, R.P.1    Kloverpris, H.2    Sacha, J.B.3    Brumme, Z.4    Brumme, C.5    Buus, S.6
  • 22
    • 33846101731 scopus 로고    scopus 로고
    • CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
    • Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, Moodley E, et al. CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nat Med. 2007;13:46-53.
    • (2007) Nat Med , vol.13 , pp. 46-53
    • Kiepiela, P.1    Ngumbela, K.2    Thobakgale, C.3    Ramduth, D.4    Honeyborne, I.5    Moodley, E.6
  • 23
    • 81255157073 scopus 로고    scopus 로고
    • Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay
    • Harndahl M, Rasmussen M, Roder G, Buus S. Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay. J Immunol Methods. 2011;374(1-2):5-12.
    • (2011) J Immunol Methods , vol.374 , Issue.1-2 , pp. 5-12
    • Harndahl, M.1    Rasmussen, M.2    Roder, G.3    Buus, S.4
  • 24
    • 1642486696 scopus 로고    scopus 로고
    • Analysis of circular dichroism data
    • Greenfield NJ. Analysis of circular dichroism data. Methods Enzymol. 2004;383:282-317.
    • (2004) Methods Enzymol , vol.383 , pp. 282-317
    • Greenfield, N.J.1
  • 25
    • 0027501381 scopus 로고
    • Circular dichroic analysis of denatured proteins: inclusion of denatured proteins in the reference set
    • Venyaminov S, Baikalov IA, Shen ZM, Wu CS, Yang JT. Circular dichroic analysis of denatured proteins: inclusion of denatured proteins in the reference set. Anal Biochem. 1993;214:17-24.
    • (1993) Anal Biochem , vol.214 , pp. 17-24
    • Venyaminov, S.1    Baikalov, I.A.2    Shen, Z.M.3    Wu, C.S.4    Yang, J.T.5
  • 26
    • 40849095843 scopus 로고    scopus 로고
    • T cell receptor engagement of peptide-major histocompatibility complex class I does not modify CD8 binding
    • Cole DK, Dunn SM, Sami M, Boulter JM, Jakobsen BK, Sewell AK. T cell receptor engagement of peptide-major histocompatibility complex class I does not modify CD8 binding. Mol Immunol. 2008;45:2700-9.
    • (2008) Mol Immunol , vol.45 , pp. 2700-2709
    • Cole, D.K.1    Dunn, S.M.2    Sami, M.3    Boulter, J.M.4    Jakobsen, B.K.5    Sewell, A.K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.