-
1
-
-
31744440502
-
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
-
Yu J, Pressoir G, Briggs WH, Bi IV, Yamasaki M, Doebley JF, et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 2006;38:203-8.
-
(2006)
Nat Genet.
, vol.38
, pp. 203-208
-
-
Yu, J.1
Pressoir, G.2
Briggs, W.H.3
Bi, I.V.4
Yamasaki, M.5
Doebley, J.F.6
-
2
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006;38:904-9.
-
(2006)
Nat Genet.
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
3
-
-
77950301214
-
Variance component model to account for sample structure in genome-wide association studies
-
Kang HM, Sul JH, Zaitlen NA, Kong S-Y, Freimer NB, Sabatti C, et al. Variance component model to account for sample structure in genome-wide association studies. Nat Genet. 2010;42:348-54.
-
(2010)
Nat Genet.
, vol.42
, pp. 348-354
-
-
Kang, H.M.1
Sul, J.H.2
Zaitlen, N.A.3
Kong, S.-Y.4
Freimer, N.B.5
Sabatti, C.6
-
4
-
-
84972511893
-
Practical markov chain monte carlo
-
Geyer CJ. Practical Markov Chain Monte Carlo. Stat Sci. 1992;7:473-83.
-
(1992)
Stat Sci.
, vol.7
, pp. 473-483
-
-
Geyer, C.J.1
-
5
-
-
84859588748
-
Detecting rare variant associations by identityby-descent mapping in case-control studies
-
Browning SR, Thompson EA. Detecting rare variant associations by identityby-descent mapping in case-control studies. Genetics. 2012;190:1521-31.
-
(2012)
Genetics
, vol.190
, pp. 1521-1531
-
-
Browning, S.R.1
Thompson, E.A.2
-
6
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen THE, Hayes BJ, Goddard ME. Prediction of total genetic value using genome-wide dense marker maps. Genetics. 2001;157:1819-29.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
7
-
-
0037297614
-
Estimating polygenic effects using markers of the entire genome
-
Xu S. Estimating polygenic effects using markers of the entire genome. Genetics. 2003;163:789-801.
-
(2003)
Genetics
, vol.163
, pp. 789-801
-
-
Xu, S.1
-
8
-
-
49849103360
-
Bayesian LASSO for quantitative trait loci mapping
-
Yi N, Xu S. Bayesian LASSO for quantitative trait loci mapping. Genetics. 2008;179:1045-55.
-
(2008)
Genetics
, vol.179
, pp. 1045-1055
-
-
Yi, N.1
Xu, S.2
-
9
-
-
77954181530
-
Comparison of association mapping methods in a complex pedigreed population
-
Sahana G, Guldbrandtsen B, Janss L, Lund MS. Comparison of association mapping methods in a complex pedigreed population. Genet Epidemiol. 2010;34:455-62.
-
(2010)
Genet Epidemiol.
, vol.34
, pp. 455-462
-
-
Sahana, G.1
Guldbrandtsen, B.2
Janss, L.3
Lund, M.S.4
-
10
-
-
45849144059
-
Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map
-
Druet T, Fritz S, Boussaha M, Ben-Jemaa S, Guillaume F, Derbala D, et al. Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map. Genetics. 2008;178:2227-35.
-
(2008)
Genetics
, vol.178
, pp. 2227-2235
-
-
Druet, T.1
Fritz, S.2
Boussaha, M.3
Ben-Jemaa, S.4
Guillaume, F.5
Derbala, D.6
-
11
-
-
84871361925
-
Statistical distributions of test statistics used for quantitative trait association mapping in structured populations
-
Teyssèdre S, Elsen J-M, Ricard A. Statistical distributions of test statistics used for quantitative trait association mapping in structured populations. Genet Sel Evol. 2012;44:32.
-
(2012)
Genet Sel Evol.
, vol.44
, pp. 32
-
-
Teyssèdre, S.1
Elsen, J.-M.2
Ricard, A.3
-
12
-
-
84863003734
-
Genome-wide efficient mixed-model analysis for association studies
-
Zhou X, Stephens M. Genome-wide efficient mixed-model analysis for association studies. Nat Genet. 2012;44:821-4.
-
(2012)
Nat Genet.
, vol.44
, pp. 821-824
-
-
Zhou, X.1
Stephens, M.2
-
14
-
-
0026210775
-
Derivation, calculation, and use of national animal model information
-
Van Raden PM, Wiggans GR. Derivation, calculation, and use of national animal model information. J Dairy Sci. 1991;74:2737-46.
-
(1991)
J Dairy Sci.
, vol.74
, pp. 2737-2746
-
-
Van Raden, P.M.1
Wiggans, G.R.2
-
15
-
-
75949105667
-
The two mutations, Q204X and nt821, of the myostatin gene affect carcass and meat quality in young heterozygous bulls of French beef breeds
-
Allais S, Levéziel H, Payet-Duprat N, Hocquette J, Lepetit J, Rousset S, et al. The two mutations, Q204X and nt821, of the myostatin gene affect carcass and meat quality in young heterozygous bulls of French beef breeds. J Anim Sci. 2010;88:446-54.
-
(2010)
J Anim Sci.
, vol.88
, pp. 446-454
-
-
Allais, S.1
Levéziel, H.2
Payet-Duprat, N.3
Hocquette, J.4
Lepetit, J.5
Rousset, S.6
-
16
-
-
34247123604
-
Genetics of disease resistance in sheep and goats
-
Bishop SC, Morris CA. Genetics of disease resistance in sheep and goats. Small Ruminant Res. 2007;70:48-59.
-
(2007)
Small Ruminant Res.
, vol.70
, pp. 48-59
-
-
Bishop, S.C.1
Morris, C.A.2
-
17
-
-
84882667245
-
A genome scan for QTL affecting resistance to Haemonchus contortus in sheep
-
Salle G, Jacquiet P, Gruner L, Cortet J, Sauve C, Prevot F, et al. A genome scan for QTL affecting resistance to Haemonchus contortus in sheep. J Anim Sci. 2012;90:4690-705.
-
(2012)
J Anim Sci.
, vol.90
, pp. 4690-4705
-
-
Salle, G.1
Jacquiet, P.2
Gruner, L.3
Cortet, J.4
Sauve, C.5
Prevot, F.6
-
18
-
-
84882613384
-
Genome-wide association studies for osteochondrosis in French Trotter horses
-
Teyssèdre S, Dupuis MC, Guérin G, Schibler L, Denoix JM, Elsen JM, et al. Genome-wide association studies for osteochondrosis in French Trotter horses. J Anim Sci. 2012;90:45-53.
-
(2012)
J Anim Sci.
, vol.90
, pp. 45-53
-
-
Teyssèdre, S.1
Dupuis, M.C.2
Guérin, G.3
Schibler, L.4
Denoix, J.M.5
Elsen, J.M.6
-
19
-
-
84893795812
-
A genome-wide association study of production traits in a commercial population of Large White pigs: Evidence of haplotypes affecting meat quality
-
Sanchez MP, Tribout T, Iannuccelli N, Bouffaud M, Servin B, Tenghe A, Dehais P, Muller D, Del Schneider MP, Mercat MJ, Rogel-Gaillard C, Milan D, Bidanel JP, Gilbert H. A genome-wide association study of production traits in a commercial population of Large White pigs: evidence of haplotypes affecting meat quality. Genet Sel Evol 2014, 46:12.
-
(2014)
Genet Sel Evol
, vol.46
, pp. 12
-
-
Sanchez, M.P.1
Tribout, T.2
Iannuccelli, N.3
Bouffaud, M.4
Servin, B.5
Tenghe, A.6
Dehais, P.7
Muller, D.8
Del Schneider, M.P.9
Mercat, M.J.10
Rogel-Gaillard, C.11
Milan, D.12
Bidanel, J.P.13
Gilbert, H.14
-
20
-
-
0036259757
-
Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping
-
Meuwissen THE, Karlsen A, Lien S, Olsaker I, Goddard ME. Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics. 2002;161:373-9.
-
(2002)
Genetics
, vol.161
, pp. 373-379
-
-
Meuwissen, T.H.E.1
Karlsen, A.2
Lien, S.3
Olsaker, I.4
Goddard, M.E.5
-
21
-
-
77950613737
-
A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping
-
Druet T, Georges M. A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics. 2010;184:789-98.
-
(2010)
Genetics
, vol.184
, pp. 789-798
-
-
Druet, T.1
Georges, M.2
-
22
-
-
33750127274
-
A note on the asymptotic distribution of likelihood ratio tests to test variance components
-
Visscher PM. A note on the asymptotic distribution of likelihood ratio tests to test variance components. Twin Res Hum Genet. 2006;9:490-5.
-
(2006)
Twin Res Hum Genet.
, vol.9
, pp. 490-495
-
-
Visscher, P.M.1
-
23
-
-
0036175484
-
Positiona candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
-
Grisart B, Coppieters W, Farnir F, Karim L, Ford C, Berzi P, et al. Positiona candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 2002;12:222-31
-
(2002)
Genome Res.
, vol.12
, pp. 222-231
-
-
Grisart, B.1
Coppieters, W.2
Farnir, F.3
Karim, L.4
Ford, C.5
Berzi, P.6
-
24
-
-
55849133422
-
Efficient methods to compute genomic predictions
-
Van Raden PM. Efficient methods to compute genomic predictions. J Dairy Sci. 2008;91:4414-23.
-
(2008)
J Dairy Sci.
, vol.91
, pp. 4414-4423
-
-
Van Raden, P.M.1
-
25
-
-
1642305462
-
BLUPF90 and related programs (BGF90)
-
Montpellier. CD-ROM Communication No 28-07
-
Misztal I, Tsuruta S, Strabel T, Auvray B, Druet T, Lee DH. BLUPF90 and related programs (BGF90). In Proceedings of the 7th World Congress on Genetics Applied to Livestock Production: 19-23 August 2002. Montpellier. CD-ROM Communication No 28-07;2002.
-
(2002)
Proceedings of the 7th World Congress on Genetics Applied to Livestock Production: 19-23 August 2002
-
-
Misztal, I.1
Tsuruta, S.2
Strabel, T.3
Auvray, B.4
Druet, T.5
Lee, D.H.6
-
26
-
-
48249096806
-
Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies
-
Hoggart CJ, Whittaker JC, De Iorio M, Balding DJ. Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies. PLoS Genet. 2008;4:e1000130.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000130
-
-
Hoggart, C.J.1
Whittaker, J.C.2
De Iorio, M.3
Balding, D.J.4
-
28
-
-
66049114148
-
Bayes factors for genome-wide association studies: Comparison with P-values
-
Wakefield J. Bayes factors for genome-wide association studies: comparison with P-values. Genet Epidemiol. 2009;33:79-86.
-
(2009)
Genet Epidemiol.
, vol.33
, pp. 79-86
-
-
Wakefield, J.1
-
31
-
-
84861895050
-
Evidence for a major QTL associated with host response to porcine reproductive and respiratory syndrome virus challenge
-
Boddicker N, Waide EH, Rowland RR, Lunney JK, Garrick DJ, Reecy JM, et al. Evidence for a major QTL associated with host response to porcine reproductive and respiratory syndrome virus challenge. J Anim Sci 2012;90:1733-46.
-
(2012)
J Anim Sci
, vol.90
, pp. 1733-1746
-
-
Boddicker, N.1
Waide, E.H.2
Rowland, R.R.3
Lunney, J.K.4
Garrick, D.J.5
Reecy, J.M.6
-
32
-
-
27744593287
-
Identification of carcass and meat quality quantitative trait loci in a Landrace pig population selected for growth and leanness
-
Vidal O, Noguera JL, Amills M, Varona L, Gil M, Jiménez N. Identification of carcass and meat quality quantitative trait loci in a Landrace pig population selected for growth and leanness. J Anim Sci. 2005;83:293-300.
-
(2005)
J Anim Sci.
, vol.83
, pp. 293-300
-
-
Vidal, O.1
Noguera, J.L.2
Amills, M.3
Varona, L.4
Gil, M.5
Jiménez, N.6
-
33
-
-
0001160153
-
A new distribution-free quantile estimator
-
Harrell FE, Davis C. A new distribution-free quantile estimator. Biometrika. 1982;69:635-40.
-
(1982)
Biometrika.
, vol.69
, pp. 635-640
-
-
Harrell, F.E.1
Davis, C.2
-
35
-
-
84898786106
-
Statistical power and significance testing in large-scale genetic studies
-
Sham PC, Purcell SM. Statistical power and significance testing in large-scale genetic studies. Nat Rev Genet. 2014;15:335-46.
-
(2014)
Nat Rev Genet.
, vol.15
, pp. 335-346
-
-
Sham, P.C.1
Purcell, S.M.2
|