A comparison between traditional kernel-based methods and network analysis: An example from two nearshore shark species

Animal Behaviour

Volumn 103, Issue , 2015, Pages 17-28

  Lédée, Elodie J I ^a   Heupel, Michelle R ^a,b   Tobin, Andrew J ^a   Knip, Danielle M ^a   Simpfendorfer, Colin A ^a  

^a JAMES COOK UNIVERSITY   (Australia)

^b AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

Author keywords

Acoustic telemetry; Animal pathways; Carcharhinus amboinensis; Carcharhinus sorrah; Kernel utilization distribution; Movement pattern

Indexed keywords

ANIMALIA; CARCHARHINUS AMBOINENSIS; CARCHARHINUS SORRAH; CHONDRICHTHYES;

EID: 84924085110     PISSN: 00033472     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.anbehav.2015.01.039     Document Type: Note

References (47)

1. Acevedo-Gutiérrez A. Habitat use. Encyclopedia of marine mammals - Second edition 2009, 524-529. Academic Press, London. F.P. William, W. Bernd, J.G.M. Thewissen (Eds.).
2. Airoldi L., Beck M.W. Loss, status and trends for coastal marine habitats of Europe. Oceanography and marine biology: An annual review 2007, Vol. 45:345-405. CRC Press-Taylor & Francis Group, Boca Raton.
3. Barrat A., Barthelemy M., Pastor-Satorras R., Vespignani A. The architecture of complex weighted networks. Proceedings of the National Academy of Sciences of the United States of America 2004, 101(11):3747-3752. 10.1073/pnas.0400087101.
4. Bodin Ö., Ramirez-Sanchez S., Ernstson H., Prell C. Some basic structural characteristics of networks. Social networks and natural resource management - Uncovering the social fabric of environmental governance 2011, 29-43. Cambridge University Press, United Kingdom at the University Press, Cambridge. T. Bodin, C. Prell (Eds.).
5. Borgatti S.P. NetDraw software for network visualization 2002, Analytic Technologies, Lexington, KY.
6. Borgatti S.P. Identifying sets of key players in a social network. Computational and Mathematical Organization Theory 2006, 12(1):21-34. 10.1007/s10588-006-7084-x.
7. Borgatti S.P., Everett M.G. Agraph-theoretic perspective on centrality. Social Networks 2006, 28(4):466-484. 10.1016/j.socnet.2005.11.005.
8. Borgatti S.P., Everett M.G., Freeman L.C. Ucinet 6 for Windows: Software for social network analysis 2002, Analytic Technologies, Harvard, MA.
9. Brooks C.P., Antonovics J., Keitt T.H. Spatial and temporal heterogeneity explain disease dynamics in a spatially explicit network model. American Naturalist 2008, 172(2):149-159. 10.1086/589451.
10. Burnham K.P., Anderson D.R. Introduction. Model selection and multimodel inference 2002, 1-48. Springer New York, United States of America. K. Burnham, D. Anderson (Eds.).
11. Butts C.T. sna: Tools for social network analysis (version R package version 2.3-1) 2013, Retrieved from. http://CRAN.R-project.org/package=sna.
12. Calenge C. The package "adehabitat" for the R software: a tool for the analysis of space and habitat use by animals. Ecological Modelling 2006, 197(3-4):516-519. 10.1016/j.ecolmodel.2006.03.017.
13. Chetkiewicz C.L.B., Clair C.C.S., Boyce M.S. Corridors for conservation: integrating pattern and process. Annual Review of Ecology Evolution and Systematics 2006, 37:317-342. 10.1146/annurev.ecolsys.37.091305.110050.
14. Croft D., James R., Krause J. Exploring animal social networks 2008, Princeton University Press, Princeton, New Jersey.
15. Csardi G., Nepusz T. The igraph software package for complex network. InterJournal, Complex Systems 2006, 1695.
16. Fall A., Fortin M.J., Manseau M., O'Brien D. Spatial graphs: principles and applications for habitat connectivity. Ecosystems 2007, 10(3):448-461. 10.1007/s10021-007-9038-7.
17. Faust K. Comparison of methods for positional analysis - structural and general equivalences. Social Networks 1988, 10(4):313-341. 10.1016/0378-8733(88)90002-0.
18. Finn J.T., Brownscombe J.W., Haak C.R., Cooke S.J., Cormier R., Gagne T., et al. Applying network methods to acoustic telemetry data: modeling the movements of tropical marine fishes. Ecological Modelling 2014, 293:139-149. 10.1016/j.ecolmodel.2013.12.014.
19. Fraschetti S., D'Ambrosio P., Micheli F., Pizzolante F., Bussotti S., Terlizzi A. Design of marine protected areas in a human-dominated seascape. Marine Ecology Progress Series 2009, 375:13-24. 10.3354/meps07781.
20. Greene C.H., Block B.A., Welch D., Jackson G., Lawson G.L., Rechisky E.L. Advances in conservation oceanography new tagging and tracking technologies and their potential for transforming the science underlying fisheries management. Oceanography 2009, 22(1):210-223.
21. Greenwood P.J., Swingland I.R. Animal movements: approaches, adaptations, and constraints. The ecology of animal movement 1983, 1-5. Clarendon Press, Oxford. I.R. Swingland, P.J. Greenwood (Eds.).
22. Hedger R.D., Martin F., Dodson J.J., Hatin D., Caron F., Whoriskey F.G. The optimized interpolation of fish positions and speeds in an array of fixed acoustic receivers. ICES Journal of Marine Science 2008, 65(7):1248-1259. 10.1093/icesjms/fsn109.
23. Heupel M.R., Semmens J.M., Hobday A.J. Automated acoustic tracking of aquatic animals: scales, design and deployment of listening station arrays. Marine and Freshwater Research 2006, 57(1):1-13. 10.1071/Mf05091.
24. Heupel M.R., Simpfendorfer C.A., Hueter R.E. Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes 2004, 71(2):135-142.
25. Jacoby D.M.P., Brooks E.J., Croft D.P., Sims D.W. Developing a deeper understanding of animal movements and spatial dynamics through novel application of network analyses. Methods in Ecology and Evolution 2012, 3(3):574-583. 10.1111/j.2041-210X.2012.00187.x.
26. Jacoby D.M.P., Croft D.P., Sims D.W. Social behaviour in sharks and rays: analysis, patterns and implications for conservation. Fish and Fisheries 2012, 13(4):399-417. 10.1111/j.1467-2979.2011.00436.x.
27. Jolliffe I.T. Introduction principal component analysis 2002, 1-9. Springer, New York.
28. Jordán F., Magura T., Tóthmérész B., Vasas V., Ködöböcz V. Carabids (Coleoptera: Carabidae) in a forest patchwork: a connectivity analysis of the Bereg Plain landscape graph. Landscape Ecology 2007, 22(10):1527-1539. 10.1007/s10980-007-9149-8.
29. Knip D.M., Heupel M.R., Simpfendorfer C.A. Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology 2012, 80(4):767-784. 10.1111/j.1095-8649.2012.03223.x.
30. Knip D.M., Heupel M.R., Simpfendorfer C.A., Tobin A.J., Moloney J. Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series 2011, 425:233-246. 10.3354/meps09006.
31. Mourier J., Vercelloni J., Planes S. Evidence of social communities in a spatially structured network of a free-ranging shark species. Animal Behaviour 2012, 83(2):389-401. 10.1016/j.anbehav.2011.11.008.
32. Opsahl T. Structure and evolution of weighted networks 2009, (Doctoral thesis), University of London, London, UK, Retrieved from. http://toreopsahl.com/publications/thesis/.
33. Papastamatiou Y.P., Lowe C.G., Caselle J.E., Friedlander A.M. Scale-dependent effects of habitat on movements and path structure of reef sharks at a predator-dominated atoll. Ecology 2009, 90(4):996-1008. 10.1890/08-0491.1.
34. R Development Core Team R: A language and environment for statistical computing (version version 3.1.0) 2014, Vienna, Austria. Retrieved from. http://www.R-project.org.
35. Rayfield B., Fortin M.J., Fall A. Connectivity for conservation: a framework to classify network measures. Ecology 2011, 92(4):847-858.
36. Rogers K.B., White G.C. Analysis of movement and habitat use from telemetry data. Analysis and interpretation of freshwater fisheries data 2007, 625-676. American Fisheries Society, Bethesda, Maryland. M. Brown, C. Guy (Eds.).
37. Simpfendorfer C.A., Heupel M.R., Collins A.B. Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences 2008, 65:482-492.
38. Simpfendorfer C.A., Heupel M.R., Hueter R.E. Estimation of short-term centers of activity from an array of omnidirectional hydrophones and its use in studying animal movements. Canadian Journal of Fisheries and Aquatic Sciences 2002, 59(1):23-32. 10.1139/F01-191.
39. Stehfest K.M., Patterson T.A., Barnett A., Semmens J.M. Markov models and network analysis reveal sex-specific differences in the space-use of a coastal apex predator. Oikos 2014, EV-1-EV-12. 10.1111/oik.01429.
40. Stehfest K.M., Patterson T.A., Dagorn L., Holland K.N., Itano D., Semmens J.M. Network analysis of acoustic tracking data reveals the structure and stability of fish aggregations in the ocean. Animal Behaviour 2013, 85(4):839-848. 10.1016/j.anbehav.2013.02.003.
41. Turchin P. Quantitative analysis of movement: Measuring and modeling population redistribution in animals and plants 1998, Sunderland, MA.
42. Urban D.L., Keitt T. Landscape connectivity: a graph-theoretic perspective. Ecology 2001, 82(5):1205-1218. 10.1890/0012-9658(2001)082.
43. Urban D.L., Minor E.S., Treml E.A., Schick R.S. Graph models of habitat mosaics. Ecology Letters 2009, 12(3):260-273. 10.1111/j.1461-0248.2008.01271.x.
44. Van Nes E.H., Scheffer M. Astrategy to improve the contribution of complex simulation models to ecological theory. Ecological Modelling 2005, 185(2-4):153-164. 10.1016/j.ecolmodel.2004.12.001.
45. Voegeli F.A., Smale M.J., Webber D.M., Andrade Y., O'Dor R.K. Ultrasonic telemetry, tracking and automated monitoring technology for sharks. Environmental Biology of Fishes 2001, 60(1-3):267-281. 10.1023/a:1007682304720.
46. West D.B. Introduction to graph theory 2001, Vol. 2. Prentice Hall, London.
47. Whitehead H., Bejder L., Andrea Ottensmeyer C. Testing association patterns: issues arising and extensions. Animal Behaviour 2005, 69(5):e1-e6. 10.1016/j.anbehav.2004.11.004.