-
1
-
-
35148839490
-
A Translation Approach to Portable Ontology Specifications
-
Gruber TR: A Translation Approach to Portable Ontology Specifications. Knowledge Acquisition 1993, 5(2):199-220.
-
(1993)
Knowledge Acquisition
, vol.5
, Issue.2
, pp. 199-220
-
-
Gruber, T.R.1
-
2
-
-
47149117822
-
Gene Ontology annotations: what they mean and where they come from
-
Hill DP, Smith B, McAndrews-Hill MS, Blake JA: Gene Ontology annotations: what they mean and where they come from. BMC Bioinformatics 2008, 9(Suppl 5):S2.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S2
-
-
Hill, D.P.1
Smith, B.2
McAndrews-Hill, M.S.3
Blake, J.A.4
-
3
-
-
84874253819
-
Gene Ontology annotations and resources
-
Gene Ontology Consortium: Gene Ontology annotations and resources. Nucl Acids Res 2013, 41:D530-D535.
-
(2013)
Nucl Acids Res
, vol.41
, pp. D530-D535
-
-
-
4
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nature Genetics 2000, 25:25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
-
5
-
-
84867331444
-
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
-
Smith CL, Eppig JT: The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm Genome 2012, 23(910):653-668.
-
(2012)
Mamm Genome
, vol.23
, Issue.910
, pp. 653-668
-
-
Smith, C.L.1
Eppig, J.T.2
-
6
-
-
84891788593
-
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse
-
Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE, Mouse Genome Database Group: The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucl Acids Res 2014, 42(1):D810-D817.
-
(2014)
Nucl Acids Res
, vol.42
, Issue.1
, pp. D810-D817
-
-
-
8
-
-
42249096794
-
Mining phenotypes for gene function prediction
-
Groth P, Weiss B, Pohlenz HD, Leser U: Mining phenotypes for gene function prediction. BMC Bioinformatics 2008, 9:136.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 136
-
-
Groth, P.1
Weiss, B.2
Pohlenz, H.D.3
Leser, U.4
-
9
-
-
34547840224
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function
-
Tao Y, Li J, Friedman C, Lussier YA: Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics 2007, 23(13):i529-i538.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. i529-i538
-
-
Tao, Y.1
Li, J.2
Friedman, C.3
Lussier, Y.A.4
-
10
-
-
4544383732
-
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study
-
Azuaje F, Bodenreider O: Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. Proc BIBE 2004, 4:317-324.
-
(2004)
Proc BIBE
, vol.4
, pp. 317-324
-
-
Azuaje, F.1
Bodenreider, O.2
-
11
-
-
84876177516
-
Systematic analysis of experimental phenotype data reveals gene functions
-
Hoehndorf R, Hardy NW, Osumi-Sutherland D, Tweedie S, Schofield PN, Gkoutos GV: Systematic analysis of experimental phenotype data reveals gene functions. PLOS One 2013, 8(4):e60847.
-
(2013)
PLOS One
, vol.8
, Issue.4
, pp. e60847
-
-
Hoehndorf, R.1
Hardy, N.W.2
Osumi-Sutherland, D.3
Tweedie, S.4
Schofield, P.N.5
Gkoutos, G.V.6
-
12
-
-
1542272766
-
Predicting phenotype from patterns of annotation
-
King OD, Lee JC, Dudley AM, Janse DM, Church GM, Roth FP: Predicting phenotype from patterns of annotation. Bioinformatics 2003, 19(Suppl 1):i183-i189.
-
(2003)
Bioinformatics
, vol.19
, pp. i183-i189
-
-
King, O.D.1
Lee, J.C.2
Dudley, A.M.3
Janse, D.M.4
Church, G.M.5
Roth, F.P.6
-
13
-
-
17444416487
-
Predicting gene function through systematic analysis and quality assessment of high-throughput data
-
Kemmeren P, Kockelkorn TT, Bijma T, Donders R, Holstege FC: Predicting gene function through systematic analysis and quality assessment of high-throughput data. Bioinformatics 2005, 21(8):1644-1652.
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1644-1652
-
-
Kemmeren, P.1
Kockelkorn, T.T.2
Bijma, T.3
Donders, R.4
Holstege, F.C.5
-
14
-
-
79953848785
-
Gene Ontology function prediction in Mollicutes using protein-protein association networks
-
Gómez A, Cedano J, Amela I, Planas A, Piñol J, Querol E: Gene Ontology function prediction in Mollicutes using protein-protein association networks. BMC Systems Biology 2011, 5:49.
-
(2011)
BMC Systems Biology
, vol.5
, pp. 49
-
-
Gómez, A.1
Cedano, J.2
Amela, I.3
Planas, A.4
Piñol, J.5
Querol, E.6
-
15
-
-
0742304254
-
Prediction of Protein Function Using Protein-Protein Interaction Data
-
Deng M, Zhang K, Mehta S, Chen T, Sun F: Prediction of Protein Function Using Protein-Protein Interaction Data. J Comput Biol 2004, 10(6):947-960.
-
(2004)
J Comput Biol
, vol.10
, Issue.6
, pp. 947-960
-
-
Deng, M.1
Zhang, K.2
Mehta, S.3
Chen, T.4
Sun, F.5
-
16
-
-
2342435295
-
Mapping gene ontology to proteins based on protein-protein interaction data
-
Deng M, Tu Z, Sun F, Chen T: Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics 2003, 20(6):895-902.
-
(2003)
Bioinformatics
, vol.20
, Issue.6
, pp. 895-902
-
-
Deng, M.1
Tu, Z.2
Sun, F.3
Chen, T.4
-
17
-
-
84924074517
-
-
private communication
-
Wood V, private communication
-
-
-
Wood, V.1
-
18
-
-
84924068691
-
Automated Annotation-Based Bio-Ontology Alignment with Structural Validation
-
Joslyn C, Baddeley B, Blake J, Bult C, Dolan M, Riensche R, Rodland K, Sanfilippo A, White A: Automated Annotation-Based Bio-Ontology Alignment with Structural Validation. Nature Proceedings 2009< http://dx.doi.org/10.1038/npre.2009.3518.1 >
-
Nature Proceedings 2009
-
-
Joslyn, C.1
Baddeley, B.2
Blake, J.3
Bult, C.4
Dolan, M.5
Riensche, R.6
Rodland, K.7
Sanfilippo, A.8
White, A.9
-
19
-
-
77954470646
-
Ontology Alignment and Merging
-
Edited by Burger A, Davidson D, Baldock R. London: Springer
-
Lambrix P, Tan H: Ontology Alignment and Merging. In Anatomy Ontologies for Bioinformatics. Edited by Burger A, Davidson D, Baldock R. London: Springer; 2008:133-149.
-
(2008)
Anatomy Ontologies for Bioinformatics
, pp. 133-149
-
-
Lambrix, P.1
Tan, H.2
-
20
-
-
84883772644
-
Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships
-
Manda P, McCarthy F, Bridges SM: Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships. J Biomed Informat 2013, 46(5):849-856.
-
(2013)
J Biomed Informat
, vol.46
, Issue.5
, pp. 849-856
-
-
Manda, P.1
McCarthy, F.2
Bridges, S.M.3
-
21
-
-
33747860914
-
Additional Gene Ontology structure for improved biological reasoning
-
Myhre S, Tveit H, Mollestad T, Lægreid A: Additional Gene Ontology structure for improved biological reasoning. Bioinformatics 2006, 22(16):2020-2027.
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 2020-2027
-
-
Myhre, S.1
Tveit, H.2
Mollestad, T.3
Lægreid, A.4
-
22
-
-
0002255910
-
New Splotch Alleles in Mouse
-
Dickie MM: New Splotch Alleles in Mouse. J Hered 1964, 55:97-101.
-
(1964)
J Hered
, vol.55
, pp. 97-101
-
-
Dickie, M.M.1
-
23
-
-
0024392649
-
Spinal ganglia reduction in the splotch-delayed mouse neural tube defect mutant
-
Moase CE, Trasler DG: Spinal ganglia reduction in the splotch-delayed mouse neural tube defect mutant. Teratology 1989, 40(1):67-75.
-
(1989)
Teratology
, vol.40
, Issue.1
, pp. 67-75
-
-
Moase, C.E.1
Trasler, D.G.2
-
24
-
-
7544243041
-
Alveolar rhabdomyosarcomas in conditional Pax3:Fkhr mice: cooperativity of Ink4a/ARF and Trp53 loss of function
-
Keller C, Arenkiel BR, Coffin CM, El-Bardeesy N, DePinho RA, Capecchi MR: Alveolar rhabdomyosarcomas in conditional Pax3:Fkhr mice: cooperativity of Ink4a/ARF and Trp53 loss of function. Genes Dev 2004, 18(21):2614-2626.
-
(2004)
Genes Dev
, vol.18
, Issue.21
, pp. 2614-2626
-
-
Keller, C.1
Arenkiel, B.R.2
Coffin, C.M.3
El-Bardeesy, N.4
DePinho, R.A.5
Capecchi, M.R.6
-
25
-
-
76949102298
-
Distinct enhancers at the Pax3 locus can function redundantly to regulate neural tube and neural crest expressions
-
Degenhardt KR, Milewski RC, Padmanabhan A, Miller M, Singh MK, Lang D, Engleka KA, Wu M, Li J, Zhou D, Antonucci N, Li L, Epstein JA: Distinct enhancers at the Pax3 locus can function redundantly to regulate neural tube and neural crest expressions. Dev Biol 2010, 339(2):519-527.
-
(2010)
Dev Biol
, vol.339
, Issue.2
, pp. 519-527
-
-
Degenhardt, K.R.1
Milewski, R.C.2
Padmanabhan, A.3
Miller, M.4
Singh, M.K.5
Lang, D.6
Engleka, K.A.7
Wu, M.8
Li, J.9
Zhou, D.10
Antonucci, N.11
Li, L.12
Epstein, J.A.13
-
26
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T: Cytoscape 2.8: New features for data integration and network visualization. Bioinformatics 2010, 27(3):431-432.
-
(2010)
Bioinformatics
, vol.27
, Issue.3
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
27
-
-
34247500374
-
Python for scientific computing
-
Oliphant TE: Python for scientific computing. Comput Sci Eng 2007, 9(3):10-20.
-
(2007)
Comput Sci Eng
, vol.9
, Issue.3
, pp. 10-20
-
-
Oliphant, T.E.1
-
28
-
-
84873421955
-
Zic3 is required in the extracardiac perinodal region of the lateral plate mesoderm for left-right patterning and heart development
-
Jiang Z, Zhu L, Hu L, Slesnick TC, Pautler RG, Justice MJ, Belmont JW: Zic3 is required in the extracardiac perinodal region of the lateral plate mesoderm for left-right patterning and heart development. Hum Mol Genet 2013, 22(5):879-889.
-
(2013)
Hum Mol Genet
, vol.22
, Issue.5
, pp. 879-889
-
-
Jiang, Z.1
Zhu, L.2
Hu, L.3
Slesnick, T.C.4
Pautler, R.G.5
Justice, M.J.6
Belmont, J.W.7
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