ORCA: A COBRA toolbox extension for model-driven discovery and analysis

Bioinformatics

Volumn 30, Issue 4, 2014, Pages 584-585

  Mao, Longfei ^a   Verwoerd, Wynand S ^a  

^a LINCOLN UNIVERSITY   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME;

ARTICLE; BIOLOGICAL MODEL; BIOLOGY; BIOMASS; BIOREACTOR; COMPUTER PROGRAM; COMPUTER SIMULATION; METABOLISM; METABOLOMICS;

BIOMASS; BIOREACTORS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; ENZYMES; METABOLIC NETWORKS AND PATHWAYS; METABOLOMICS; MODELS, BIOLOGICAL; SOFTWARE;

EID: 84894550994     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt723     Document Type: Article

References (7)

1. Kostromins, A. and Stalidzans, E. (2012) Paint4Net: COBRA toolbox extension for visualization of stoichiometric models of metabolism. Biosystems, 109, 233-239.
2. Lakshmanan, M. et al. (2012) Software applications for flux balance analysis. Brief. Bioinform., [Epub ahead of print.].
3. Mahadevan, R. et al. (2002) Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J., 83, 1331-1340.
4. Mao, L. and Verwoerd, W.S. (2013a) Exploration and comparison of inborn microbial capacity of aerobic and anaerobic metabolisms of Saccharomyces cerevisiae for current production. Bioengineered, 4, 420-430.
5. Mao, L. and Verwoerd, W.S. (2013b) Genome-scale stoichiometry analysis to elucidate the innate capability of the cyanobacterium Synechocystis for electricity generation. J. Ind. Microbiol. Biotechnol., 40, 1161-1180.
6. Mao, L. and Verwoerd, W.S. (2013c) Model-driven elucidation of the inherent capacity of Geobacter sulfurreducens for electricity generation. J. Biol. Eng., 7, 14.
7. Schellenberger, J. et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox v2.0. Nat. Protoc., 6, 1290-1307.