-
1
-
-
40849145295
-
Assembly and disassembly dynamics of the cyanobacterial periodosome
-
Akiyama, S., Nohara, A., Ito, K. & Maéda, Y. (2008) Assembly and disassembly dynamics of the cyanobacterial periodosome. Mol. Cell 29, 703-716.
-
(2008)
Mol. Cell
, vol.29
, pp. 703-716
-
-
Akiyama, S.1
Nohara, A.2
Ito, K.3
Maéda, Y.4
-
2
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
3
-
-
84863275177
-
Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism
-
Egli, M., Mori, T., Pattanayek, R., Xu, Y., Qin, X. & Johnson, C.H. (2012) Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism. Biochemistry 51, 1547-1558.
-
(2012)
Biochemistry
, vol.51
, pp. 1547-1558
-
-
Egli, M.1
Mori, T.2
Pattanayek, R.3
Xu, Y.4
Qin, X.5
Johnson, C.H.6
-
4
-
-
0022528868
-
Dinitrogen-fixing endogenous rhythm in Synechococcus RF-1
-
Grobbelaar, N., Huang, T.C., Lin, H.Y. & Chow, T.J. (1986) Dinitrogen-fixing endogenous rhythm in Synechococcus RF-1. FEMS Microbiol. Lett. 37, 173-177.
-
(1986)
FEMS Microbiol. Lett.
, vol.37
, pp. 173-177
-
-
Grobbelaar, N.1
Huang, T.C.2
Lin, H.Y.3
Chow, T.J.4
-
5
-
-
1542345751
-
Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC
-
Hayashi, F., Ito, H., Fujita, M., Iwase, R., Uzumaki, T. & Ishiura, M. (2004) Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC. Biochem. Biophys. Res. Commun. 316, 195-202.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.316
, pp. 195-202
-
-
Hayashi, F.1
Ito, H.2
Fujita, M.3
Iwase, R.4
Uzumaki, T.5
Ishiura, M.6
-
6
-
-
33747253552
-
Hexamerization by the N-terminal domain and intersubunit phosphorylation by the C-terminal domain of cyanobacterial circadian clock protein KaiC
-
Hayashi, F., Iwase, R., Uzumaki, T. & Ishiura, M. (2006) Hexamerization by the N-terminal domain and intersubunit phosphorylation by the C-terminal domain of cyanobacterial circadian clock protein KaiC. Biochem. Biophys. Res. Commun. 348, 864-872.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.348
, pp. 864-872
-
-
Hayashi, F.1
Iwase, R.2
Uzumaki, T.3
Ishiura, M.4
-
7
-
-
0348026753
-
ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC
-
Hayashi, F., Suzuki, H., Iwase, R., Uzumaki, T., Miyake, A., Shen, J.R., Imada, K., Furukawa, Y., Yonekura, K., Namba, K. & Ishiura, M. (2003) ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC. Genes Cells 8, 287-296.
-
(2003)
Genes Cells
, vol.8
, pp. 287-296
-
-
Hayashi, F.1
Suzuki, H.2
Iwase, R.3
Uzumaki, T.4
Miyake, A.5
Shen, J.R.6
Imada, K.7
Furukawa, Y.8
Yonekura, K.9
Namba, K.10
Ishiura, M.11
-
8
-
-
21444458211
-
Tetrameric architecture of the circadian clock protein KaiB - a novel interface for intermolecular interactions and its impact on the circadian rhythm
-
Hitomi, K., Oyama, T., Han, S.G., Arvai, A.S. & Getzoff, E.D. (2005) Tetrameric architecture of the circadian clock protein KaiB - a novel interface for intermolecular interactions and its impact on the circadian rhythm. J. Biol. Chem. 280, 19127-19135.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 19127-19135
-
-
Hitomi, K.1
Oyama, T.2
Han, S.G.3
Arvai, A.S.4
Getzoff, E.D.5
-
9
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C.R., Tanabe, A., Golden, S.S., Johnson, C.H. & Kondo, T. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281, 1519-1523.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
Tanabe, A.6
Golden, S.S.7
Johnson, C.H.8
Kondo, T.9
-
10
-
-
0034646509
-
A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria
-
Iwasaki, H., Williams, S.B., Kitayama, Y., Ishiura, M., Golden, S.S. & Kondo, T. (2000) A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101, 223-233.
-
(2000)
Cell
, vol.101
, pp. 223-233
-
-
Iwasaki, H.1
Williams, S.B.2
Kitayama, Y.3
Ishiura, M.4
Golden, S.S.5
Kondo, T.6
-
11
-
-
0037180442
-
KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria
-
Iwasaki, H., Nishiwaki, T., Kitayama, Y., Nakajima, M. & Kondo, T. (2002) KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc. Natl Acad. Sci. USA 99, 15788-15793.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 15788-15793
-
-
Iwasaki, H.1
Nishiwaki, T.2
Kitayama, Y.3
Nakajima, M.4
Kondo, T.5
-
12
-
-
30044441280
-
Unique homo-tetrameric structure and functionally important sub-structures of the circadian clock protein KaiB
-
Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Morishita, M., Onai, K., Furukawa, Y., Namba, K. & Ishiura, M. (2005) Unique homo-tetrameric structure and functionally important sub-structures of the circadian clock protein KaiB. J. Biol. Chem. 280, 43141-43149.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 43141-43149
-
-
Iwase, R.1
Imada, K.2
Hayashi, F.3
Uzumaki, T.4
Morishita, M.5
Onai, K.6
Furukawa, Y.7
Namba, K.8
Ishiura, M.9
-
13
-
-
33746147001
-
Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro
-
Kageyama, H., Nishiwaki, T., Nakajima, M., Iwasaki, H., Oyama, T. & Kondo, T. (2006) Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro. Mol. Cell 23, 161-171.
-
(2006)
Mol. Cell
, vol.23
, pp. 161-171
-
-
Kageyama, H.1
Nishiwaki, T.2
Nakajima, M.3
Iwasaki, H.4
Oyama, T.5
Kondo, T.6
-
14
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system
-
Kitayama, Y., Iwasaki, H., Nishiwaki, T. & Kondo, T. (2003) KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J. 22, 2127-2134.
-
(2003)
EMBO J.
, vol.22
, pp. 2127-2134
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
15
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
16
-
-
0025212142
-
Determination of size, molecular weight, and presence of subunits
-
In: (ed. M.P. Deutscher). San Diego, CA: Academic Press.
-
Laue, T.M. & Rhodes, D.G. (1990) Determination of size, molecular weight, and presence of subunits. In: Methods in Enzymology (ed. M.P. Deutscher ), 182, pp. 566-587. San Diego, CA: Academic Press.
-
(1990)
Methods in Enzymology
, vol.182
, pp. 566-587
-
-
Laue, T.M.1
Rhodes, D.G.2
-
17
-
-
0002498995
-
Computer-aided interpretation of analytical sedimentation data for proteins
-
In: (eds S.E. Harding, A.J. Rowe & J.C. Horton) - Cambridge, Cambridgeshire: Royal Society of Chemistry.
-
Laue, T.M., Shah, B.D., Ridgeway, T.M. & Pelletier, S.L. (1992) Computer-aided interpretation of analytical sedimentation data for proteins. In: Analytical Ultracentrifugation in Biochemistry and Polymer Science (eds S.E. Harding, A.J. Rowe & J.C. Horton ), pp. 90-125. Cambridge, Cambridgeshire: Royal Society of Chemistry.
-
(1992)
Analytical Ultracentrifugation in Biochemistry and Polymer Science
, pp. 90-125
-
-
Laue, T.M.1
Shah, B.D.2
Ridgeway, T.M.3
Pelletier, S.L.4
-
18
-
-
0037168601
-
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
-
Mori, T., Saveliev, S.V., Xu, Y., Stafford, W.F., Cox, M.M., Inman, R.B. & Johnson, C.H. (2002) Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc. Natl Acad. Sci. USA 99, 17203-17208.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 17203-17208
-
-
Mori, T.1
Saveliev, S.V.2
Xu, Y.3
Stafford, W.F.4
Cox, M.M.5
Inman, R.B.6
Johnson, C.H.7
-
19
-
-
41149123332
-
ATPase activity and its temperature compensation of the cyanobacterial clock protein KaiC
-
Murakami, R., Miyake, A., Iwase, R., Hayashi, F., Uzumaki, T. & Ishiura, M. (2008) ATPase activity and its temperature compensation of the cyanobacterial clock protein KaiC. Genes Cells 13, 387-395.
-
(2008)
Genes Cells
, vol.13
, pp. 387-395
-
-
Murakami, R.1
Miyake, A.2
Iwase, R.3
Hayashi, F.4
Uzumaki, T.5
Ishiura, M.6
-
20
-
-
84865446780
-
The roles of the dimeric and tetrameric structures of the clock protein KaiB in the generation of circadian oscillations in cyanobacteria
-
Murakami, R., Mutoh, R., Iwase, R., Furukawa, Y., Imada, K., Onai, K., Morishita, M., Yasui, S., Ishii, K., Valencia, J.S., Uzumaki, T., Namba, K. & Ishiura, M. (2012) The roles of the dimeric and tetrameric structures of the clock protein KaiB in the generation of circadian oscillations in cyanobacteria. J. Biol. Chem. 287, 29506-29515.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 29506-29515
-
-
Murakami, R.1
Mutoh, R.2
Iwase, R.3
Furukawa, Y.4
Imada, K.5
Onai, K.6
Morishita, M.7
Yasui, S.8
Ishii, K.9
Valencia, J.S.10
Uzumaki, T.11
Namba, K.12
Ishiura, M.13
-
21
-
-
77951191008
-
Direct interaction between KaiA and KaiB revealed by a site-directed spin labeling electron spin resonance analysis
-
Mutoh, R., Mino, H., Murakami, R., Uzumaki, T., Takabayashi, A., Ishii, K. & Ishiura, M. (2010) Direct interaction between KaiA and KaiB revealed by a site-directed spin labeling electron spin resonance analysis. Genes Cells 15, 269-280.
-
(2010)
Genes Cells
, vol.15
, pp. 269-280
-
-
Mutoh, R.1
Mino, H.2
Murakami, R.3
Uzumaki, T.4
Takabayashi, A.5
Ishii, K.6
Ishiura, M.7
-
22
-
-
84893197360
-
The ATP-mediated regulation of KaiB-KaiC interaction in the cyanobacterial circadian clock
-
Mutoh, R., Nishimura, A., Yasui, S., Onai, K. & Ishiura, M. (2013) The ATP-mediated regulation of KaiB-KaiC interaction in the cyanobacterial circadian clock. PLoS ONE 8, e80200.
-
(2013)
PLoS ONE
, vol.8
, pp. e80200
-
-
Mutoh, R.1
Nishimura, A.2
Yasui, S.3
Onai, K.4
Ishiura, M.5
-
23
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima, M., Imai, K., Ito, H., Nishiwaki, T., Murayama, Y., Iwasaki, H., Oyama, T. & Kondo, T. (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308, 414-415.
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
24
-
-
0018525793
-
Methods for cosinor-rhythmometry
-
Nelson, W., Tong, Y.L., Lee, J.K. & Halberg, F. (1979) Methods for cosinor-rhythmometry Chronobiologia 6, 305-323.
-
(1979)
Chronobiologia
, vol.6
, pp. 305-323
-
-
Nelson, W.1
Tong, Y.L.2
Lee, J.K.3
Halberg, F.4
-
25
-
-
84861547472
-
Circadian autodephosphorylation of cyanobacterial clock protein KaiC occurs via formation of ATP as intermediate
-
Nishiwaki, T. & Kondo, T. (2012) Circadian autodephosphorylation of cyanobacterial clock protein KaiC occurs via formation of ATP as intermediate. J. Biol. Chem. 287, 18030-18035.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 18030-18035
-
-
Nishiwaki, T.1
Kondo, T.2
-
26
-
-
17444364481
-
RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time
-
Okamoto, K., Onai, K. & Ishiura, M. (2005) RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time. Anal. Biochem. 340, 193-200.
-
(2005)
Anal. Biochem.
, vol.340
, pp. 193-200
-
-
Okamoto, K.1
Onai, K.2
Ishiura, M.3
-
27
-
-
3242812815
-
Circadian rhythms in the thermophilic cyanobacterium Thermosynechococcus elongatus: compensation of period length over a wide temperature range
-
Onai, K., Morishita, M., Itoh, S., Okamoto, K. & Ishiura, M. (2004) Circadian rhythms in the thermophilic cyanobacterium Thermosynechococcus elongatus: compensation of period length over a wide temperature range. J. Bacteriol. 186, 4972-4977.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4972-4977
-
-
Onai, K.1
Morishita, M.2
Itoh, S.3
Okamoto, K.4
Ishiura, M.5
-
28
-
-
4143103631
-
Visualizing a circadian clock protein: crystal structure of KaiC and functional insights
-
Pattanayek, R., Wang, J., Mori, T., Xu, Y., Johnson, C.H. & Egli, M. (2004) Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. Mol. Cell 15, 375-388.
-
(2004)
Mol. Cell
, vol.15
, pp. 375-388
-
-
Pattanayek, R.1
Wang, J.2
Mori, T.3
Xu, Y.4
Johnson, C.H.5
Egli, M.6
-
29
-
-
47049084270
-
Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation
-
Pattanayek, R., Williams, D.R., Pattanayek, S., Mori, T., Johnson, C.H., Stewart, P.L. & Egli, M. (2008) Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation. EMBO J. 27, 1767-1778.
-
(2008)
EMBO J.
, vol.27
, pp. 1767-1778
-
-
Pattanayek, R.1
Williams, D.R.2
Pattanayek, S.3
Mori, T.4
Johnson, C.H.5
Stewart, P.L.6
Egli, M.7
-
30
-
-
0022186670
-
Measurement of protein using bicinchoninic acid
-
Smith, P.K., Krohn, R.I., Hermanson, G.T., Mallia, A.K., Gartner, F.H., Provenzano, M.D., Fujimoto, E.K., Goeke, N.M., Olson, B.J. & Klenk, D.C. (1985) Measurement of protein using bicinchoninic acid. Anal. Biochem. 150, 76-85.
-
(1985)
Anal. Biochem.
, vol.150
, pp. 76-85
-
-
Smith, P.K.1
Krohn, R.I.2
Hermanson, G.T.3
Mallia, A.K.4
Gartner, F.H.5
Provenzano, M.D.6
Fujimoto, E.K.7
Goeke, N.M.8
Olson, B.J.9
Klenk, D.C.10
-
31
-
-
33747061828
-
A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria
-
Takai, N., Nakajima, M., Oyama, T., Kito, R., Sugita, C., Sugita, M., Kondo, T. & Iwasaki, H. (2006) A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl Acad. Sci. USA 103, 12109-12114.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12109-12114
-
-
Takai, N.1
Nakajima, M.2
Oyama, T.3
Kito, R.4
Sugita, C.5
Sugita, M.6
Kondo, T.7
Iwasaki, H.8
-
32
-
-
36049042660
-
ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria
-
Terauchi, K., Kitayama, Y., Nishiwaki, T., Miwa, K., Murayama, Y., Oyama, T. & Kondo, T. (2007) ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria. Proc. Natl Acad. Sci. USA 104, 16377-16381.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 16377-16381
-
-
Terauchi, K.1
Kitayama, Y.2
Nishiwaki, T.3
Miwa, K.4
Murayama, Y.5
Oyama, T.6
Kondo, T.7
-
33
-
-
3042637775
-
Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein
-
Uzumaki, T., Fujita, M., Nakatsu, T., Hayashi, F., Shibata, H., Itoh, N., Kato, H. & Ishiura, M. (2004) Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein. Nat. Struct. Mol. Biol. 11, 623-631.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 623-631
-
-
Uzumaki, T.1
Fujita, M.2
Nakatsu, T.3
Hayashi, F.4
Shibata, H.5
Itoh, N.6
Kato, H.7
Ishiura, M.8
-
34
-
-
84859922635
-
Phase-dependent generation and transmission of time information by the KaiABC circadian clock oscillator through SasA-KaiC interaction in cyanobacteria
-
Valencia, S.J., Bitou, K., Ishii, K., Murakami, R., Morishita, M., Onai, K., Furukawa, Y., Imada, K., Namba, K. & Ishiura, M. (2012) Phase-dependent generation and transmission of time information by the KaiABC circadian clock oscillator through SasA-KaiC interaction in cyanobacteria. Genes Cells 17, 398-419.
-
(2012)
Genes Cells
, vol.17
, pp. 398-419
-
-
Valencia, S.J.1
Bitou, K.2
Ishii, K.3
Murakami, R.4
Morishita, M.5
Onai, K.6
Furukawa, Y.7
Imada, K.8
Namba, K.9
Ishiura, M.10
-
35
-
-
84883263085
-
CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts
-
Villarreal, S.A., Pattanayek, R., Williams, D.R., Mori, T., Qin, X., Johnson, C.H., Egli, M. & Stewart, P.L. (2013) CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts. J. Mol. Biol. 425, 3311-3324.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3311-3324
-
-
Villarreal, S.A.1
Pattanayek, R.2
Williams, D.R.3
Mori, T.4
Qin, X.5
Johnson, C.H.6
Egli, M.7
Stewart, P.L.8
-
36
-
-
0038219594
-
Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC
-
Xu, Y., Mori, T. & Johnson, C.H. (2003) Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J. 22, 2117-2126.
-
(2003)
EMBO J.
, vol.22
, pp. 2117-2126
-
-
Xu, Y.1
Mori, T.2
Johnson, C.H.3
-
37
-
-
77957187961
-
Photosynthetic activities of a thermophilic blue-green alga
-
Yamaoka, T., Satoh, K. & Katoh, S. (1978) Photosynthetic activities of a thermophilic blue-green alga. Plant Cell Physiol. 19, 943-954.
-
(1978)
Plant Cell Physiol.
, vol.19
, pp. 943-954
-
-
Yamaoka, T.1
Satoh, K.2
Katoh, S.3
|