메뉴 건너뛰기




Volumn 189, Issue 3, 2015, Pages 195-206

Corrigendum to "Progressive Stochastic Reconstruction Technique (PSRT) for cryo electron tomography" [J. Struct. Biol. 189, (3), (2015), 195-206], doi 10.1016/j.jsb.2015.01.011;Progressive stochastic reconstruction technique (PSRT) for cryo electron tomography

Author keywords

3D reconstruction; Cryo electron tomography; Metropolis Hastings; Monte Carlo; Stochastic reconstruction; Subtomogram averaging

Indexed keywords

ALGORITHM; ARTICLE; ARTIFACT; ELECTRON TOMOGRAPHY; ESCHERICHIA COLI; IMAGE RECONSTRUCTION; IMAGING PHANTOM; MONTE CARLO METHOD; PRIORITY JOURNAL; PROGRESSIVE STOCHASTIC RECONSTRUCTION TECHNIQUE; RIBOSOME; SIGNAL NOISE RATIO; CHEMISTRY; CRYOELECTRON MICROSCOPY; IMAGE PROCESSING; MACROMOLECULE; MARKOV CHAIN; PROCEDURES; REPRODUCIBILITY; THREE DIMENSIONAL IMAGING;

EID: 84923421382     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2015.04.011     Document Type: Erratum
Times cited : (8)

References (52)
  • 1
    • 79951541783 scopus 로고    scopus 로고
    • Fast tomographic reconstruction on multicore computers
    • Agulleiro J.I., Fernández J.J. Fast tomographic reconstruction on multicore computers. Bioinformatics 2011, 27:582-583.
    • (2011) Bioinformatics , vol.27 , pp. 582-583
    • Agulleiro, J.I.1    Fernández, J.J.2
  • 3
    • 0021344602 scopus 로고
    • Simultaneous Algebraic Reconstruction Technique (SART): a superior implementation of the ART algorithm
    • Andersen A.H., Kak A.C. Simultaneous Algebraic Reconstruction Technique (SART): a superior implementation of the ART algorithm. Ultrason. Imaging 1984, 6:81-94.
    • (1984) Ultrason. Imaging , vol.6 , pp. 81-94
    • Andersen, A.H.1    Kak, A.C.2
  • 4
    • 79952331778 scopus 로고    scopus 로고
    • Metropolis Monte Carlo for tomographic reconstruction with prior smoothness information
    • Barbuzza R., Clausse A. Metropolis Monte Carlo for tomographic reconstruction with prior smoothness information. IET-IPR 2011, 5:198-204.
    • (2011) IET-IPR , vol.5 , pp. 198-204
    • Barbuzza, R.1    Clausse, A.2
  • 5
    • 44449179947 scopus 로고    scopus 로고
    • Classification and 3D averaging with missing wedge correction in biological electron tomography
    • Bartesaghi A., Sprechmann P., Liu J., Randall G., Sapiro G., Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. J. Struct. Biol. 2008, 162:436-450.
    • (2008) J. Struct. Biol. , vol.162 , pp. 436-450
    • Bartesaghi, A.1    Sprechmann, P.2    Liu, J.3    Randall, G.4    Sapiro, G.5    Subramaniam, S.6
  • 6
    • 0000484921 scopus 로고
    • Inversion of fan-beam scans in radio astronomy
    • Bracewell R.N., Riddle A.C. Inversion of fan-beam scans in radio astronomy. Astrophys. J. 1967, 150:427-434.
    • (1967) Astrophys. J. , vol.150 , pp. 427-434
    • Bracewell, R.N.1    Riddle, A.C.2
  • 7
    • 84878527131 scopus 로고    scopus 로고
    • Structural biology in situ the potential of subtomogram averaging
    • Briggs J.A. Structural biology in situ the potential of subtomogram averaging. Curr. Opin. Struct. Biol. 2013, 23:261-267.
    • (2013) Curr. Opin. Struct. Biol. , vol.23 , pp. 261-267
    • Briggs, J.A.1
  • 8
    • 84860574289 scopus 로고    scopus 로고
    • Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-em data in high-performance computing environments
    • Castaño-Díez D., Kudryashev M., Arheit M., Henning S. Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-em data in high-performance computing environments. J. Struct. Biol. 2012, 178:139-151.
    • (2012) J. Struct. Biol. , vol.178 , pp. 139-151
    • Castaño-Díez, D.1    Kudryashev, M.2    Arheit, M.3    Henning, S.4
  • 9
    • 84894450833 scopus 로고    scopus 로고
    • Iterative reconstruction of cryo-electron tomograms using nonuniform fast fourier transforms
    • Chen Y., Förster F. Iterative reconstruction of cryo-electron tomograms using nonuniform fast fourier transforms. J. Struct. Biol. 2013, 185(3):309-316.
    • (2013) J. Struct. Biol. , vol.185 , Issue.3 , pp. 309-316
    • Chen, Y.1    Förster, F.2
  • 11
    • 0014894609 scopus 로고
    • The reconstruction of a three-dimensional structure from projections and its application to electron microscopy
    • Crowther R.A., DeRosier D.J., Klug A. The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. Proc. R. Soc. Lond. A. Math. Phys. Sci. 1970, 317:319-340.
    • (1970) Proc. R. Soc. Lond. A. Math. Phys. Sci. , vol.317 , pp. 319-340
    • Crowther, R.A.1    DeRosier, D.J.2    Klug, A.3
  • 12
    • 41849101999 scopus 로고    scopus 로고
    • Electron tomography: a short overview with an emphasis on the absorption potential model for the forward problem
    • Fanelli D., Öktem O. Electron tomography: a short overview with an emphasis on the absorption potential model for the forward problem. Inverse Probl. 2008, 24.
    • (2008) Inverse Probl. , vol.24
    • Fanelli, D.1    Öktem, O.2
  • 13
    • 51549115028 scopus 로고    scopus 로고
    • High performance computing in structural determination by electron cryomicroscopy
    • Fernández J.J. High performance computing in structural determination by electron cryomicroscopy. J. Struct. Biol. 2008, 164:1-6.
    • (2008) J. Struct. Biol. , vol.164 , pp. 1-6
    • Fernández, J.J.1
  • 14
    • 84862136069 scopus 로고    scopus 로고
    • Computational methods for electron tomography
    • Fernández J.J. Computational methods for electron tomography. Micron 2012, 43:1010-1030.
    • (2012) Micron , vol.43 , pp. 1010-1030
    • Fernández, J.J.1
  • 15
    • 33847232164 scopus 로고    scopus 로고
    • Structure determination in situ by averaging of tomograms
    • Academic Press, J.R. McIntosh (Ed.) Cellular Electron Microscopy
    • Förster F., Hegerl R. Structure determination in situ by averaging of tomograms. Methods in Cell Biology 2007, vol. 79:741-767. Academic Press. J.R. McIntosh (Ed.).
    • (2007) Methods in Cell Biology , vol.79 , pp. 741-767
    • Förster, F.1    Hegerl, R.2
  • 18
    • 0019707963 scopus 로고
    • Spider a modular software system for electron image processing
    • Frank J., Shimkin B., Dowse H. Spider a modular software system for electron image processing. Ultramicroscopy 1981, 6:343-357.
    • (1981) Ultramicroscopy , vol.6 , pp. 343-357
    • Frank, J.1    Shimkin, B.2    Dowse, H.3
  • 19
    • 0015372442 scopus 로고
    • Iterative methods for the three-dimensional reconstruction of an object from projections
    • Gilbert P. Iterative methods for the three-dimensional reconstruction of an object from projections. J. Theor. Biol. 1972, 36:105-117.
    • (1972) J. Theor. Biol. , vol.36 , pp. 105-117
    • Gilbert, P.1
  • 20
    • 0015523343 scopus 로고
    • The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods
    • Gilbert P.F.C. The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods. Proc. R. Soc. B Biol. Sci. 1972, 182:89-102.
    • (1972) Proc. R. Soc. B Biol. Sci. , vol.182 , pp. 89-102
    • Gilbert, P.F.C.1
  • 21
    • 0015204559 scopus 로고
    • Reconstruction of pictures from their projections
    • Gordon R., Herman G.T. Reconstruction of pictures from their projections. Commun. ACM 1971, 14:759-768.
    • (1971) Commun. ACM , vol.14 , pp. 759-768
    • Gordon, R.1    Herman, G.T.2
  • 22
    • 84867534029 scopus 로고    scopus 로고
    • Stochastic tomography and its applications in 3D imaging of mixing fluids
    • Gregson J., Krimerman M., Hullin M.B., Heidrich W. Stochastic tomography and its applications in 3D imaging of mixing fluids. ACM Trans. Graph. 2012, 31:52:1-10.
    • (2012) ACM Trans. Graph. , vol.31 , Issue.52 , pp. 1-10
    • Gregson, J.1    Krimerman, M.2    Hullin, M.B.3    Heidrich, W.4
  • 23
    • 84945708500 scopus 로고
    • Algorithm 247: radical-inverse quasi-random point sequence
    • Halton J.H. Algorithm 247: radical-inverse quasi-random point sequence. Commun. ACM 1964, 7:701-702.
    • (1964) Commun. ACM , vol.7 , pp. 701-702
    • Halton, J.H.1
  • 25
    • 77956890234 scopus 로고
    • Monte carlo sampling methods using Markov chains and their applications
    • Hastings W.K. Monte carlo sampling methods using Markov chains and their applications. Biometrika 1970, 57:97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 27
  • 28
    • 84860584901 scopus 로고    scopus 로고
    • Pytom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis
    • Hrabe T., Chen Y., Pfeffer S., Cuellar L.K., Mangold A.V., Förster F. Pytom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis. J. Struct. Biol. 2012, 178:177-188.
    • (2012) J. Struct. Biol. , vol.178 , pp. 177-188
    • Hrabe, T.1    Chen, Y.2    Pfeffer, S.3    Cuellar, L.K.4    Mangold, A.V.5    Förster, F.6
  • 29
    • 0001554939 scopus 로고
    • Angenäherte auflösung von systemen linearer gleichungen
    • Kaczmarz S. Angenäherte auflösung von systemen linearer gleichungen. Bull. Int. Acad. Pol. Sci. Let. Cl. Med. 1937, A35:355-357.
    • (1937) Bull. Int. Acad. Pol. Sci. Let. Cl. Med. , vol.A35 , pp. 355-357
    • Kaczmarz, S.1
  • 30
  • 31
    • 79953668784 scopus 로고    scopus 로고
    • Fast and high-quality reconstruction in electron tomography based on an enhanced linear forward model
    • Kohr H., Louis A.K. Fast and high-quality reconstruction in electron tomography based on an enhanced linear forward model. Inverse Probl. 2011, 27.
    • (2011) Inverse Probl. , pp. 27
    • Kohr, H.1    Louis, A.K.2
  • 32
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using IMOD
    • Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 33
    • 0000518587 scopus 로고
    • An iteration formula for Fredholm integral equations of the first kind
    • Landweber L. An iteration formula for Fredholm integral equations of the first kind. Am. J. Math. 1951, 73:615-624.
    • (1951) Am. J. Math. , vol.73 , pp. 615-624
    • Landweber, L.1
  • 35
    • 0023430366 scopus 로고
    • Monte Carlo-minimization approach to the multiple-minima problem in protein folding
    • Li Z., Scheraga H.A. Monte Carlo-minimization approach to the multiple-minima problem in protein folding. Proc. Natl. Acad. Sci. 1987, 84:6611-6615.
    • (1987) Proc. Natl. Acad. Sci. , vol.84 , pp. 6611-6615
    • Li, Z.1    Scheraga, H.A.2
  • 36
    • 0003678262 scopus 로고
    • Inverse und schlecht gestellte Probleme
    • (Teubner Studienbucher) (German Edition). B.G. Teubner.
    • Louis, A.K., 1989. Inverse und schlecht gestellte Probleme (Teubner Studienbucher) (German Edition). B.G. Teubner.
    • (1989)
    • Louis, A.K.1
  • 37
    • 14844330221 scopus 로고    scopus 로고
    • Structure studies by electron tomography: from cells to molecules
    • Lucić V., Förster F., Baumeister W. Structure studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74:833-865.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 833-865
    • Lucić, V.1    Förster, F.2    Baumeister, W.3
  • 38
    • 0033377664 scopus 로고    scopus 로고
    • Eman: semiautomated software for high-resolution single-particle reconstructions
    • Ludtke S.J., Baldwin P.R., Chiu W. Eman: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 1999, 128:82-97.
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 39
    • 84923399408 scopus 로고    scopus 로고
    • Different conformational states of ribosomes measured by cryo-electron tomography
    • (Unpublished results).
    • Maletta, M., Marsalek, L., Sani, M., Simonetti, A., Fabretti, A., Slusallek, P., Peters, J.P., 2014. Different conformational states of ribosomes measured by cryo-electron tomography. (Unpublished results).
    • (2014)
    • Maletta, M.1    Marsalek, L.2    Sani, M.3    Simonetti, A.4    Fabretti, A.5    Slusallek, P.6    Peters, J.P.7
  • 41
    • 84888087784 scopus 로고    scopus 로고
    • A cylindrical specimen holder for electron cryo-tomography
    • Palmer C.M., Loewe J. A cylindrical specimen holder for electron cryo-tomography. Ultramicroscopy 2014, 137:20-29.
    • (2014) Ultramicroscopy , vol.137 , pp. 20-29
    • Palmer, C.M.1    Loewe, J.2
  • 42
    • 0002580515 scopus 로고
    • Weighted back-projection methods
    • Plenum Press, New York, J. Frank (Ed.)
    • Radermacher M. Weighted back-projection methods. Electron Tomography 1992, 91-115. Plenum Press, New York. J. Frank (Ed.).
    • (1992) Electron Tomography , pp. 91-115
    • Radermacher, M.1
  • 43
    • 84985231782 scopus 로고
    • Three-dimensional reconstruction from a single-exposure random conical tilt series applied to the 50s ribosomal subunit of Escherichia coli
    • Radermacher M., Wagenknecht T., Verschoor A., Frank J. Three-dimensional reconstruction from a single-exposure random conical tilt series applied to the 50s ribosomal subunit of Escherichia coli. J. Microsc. 1987, 146:113-136.
    • (1987) J. Microsc. , vol.146 , pp. 113-136
    • Radermacher, M.1    Wagenknecht, T.2    Verschoor, A.3    Frank, J.4
  • 45
    • 0344011098 scopus 로고    scopus 로고
    • A fast reconstruction algorithm for electron microscope tomography
    • Sandberg K., Mastronarde D.N., Beylkin G. A fast reconstruction algorithm for electron microscope tomography. J. Struct. Biol. 2003, 144:61-72.
    • (2003) J. Struct. Biol. , vol.144 , pp. 61-72
    • Sandberg, K.1    Mastronarde, D.N.2    Beylkin, G.3
  • 46
    • 71049139404 scopus 로고    scopus 로고
    • Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
    • Scheres S.H., Melero R., Valle M., Carazo J.M. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure 2009, 17:1563-1572.
    • (2009) Structure , vol.17 , pp. 1563-1572
    • Scheres, S.H.1    Melero, R.2    Valle, M.3    Carazo, J.M.4
  • 47
    • 0016068330 scopus 로고
    • The Fourier reconstruction of a head section
    • Shepp L., Logan B.F. The Fourier reconstruction of a head section. IEEE Trans. Nucl. Sci. 1974, 21:21-43.
    • (1974) IEEE Trans. Nucl. Sci. , vol.21 , pp. 21-43
    • Shepp, L.1    Logan, B.F.2
  • 48
    • 0030295008 scopus 로고    scopus 로고
    • Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus
    • Skoglund U., Öfverstedt L.G., Burnett R.M., Bricogne G. Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus. J. Struct. Biol. 1996, 117:173-188.
    • (1996) J. Struct. Biol. , vol.117 , pp. 173-188
    • Skoglund, U.1    Öfverstedt, L.G.2    Burnett, R.M.3    Bricogne, G.4
  • 49
    • 0033166855 scopus 로고    scopus 로고
    • Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle
    • Winkler H., Taylor K.A. Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle. Ultramicroscopy 1999, 77:141-152.
    • (1999) Ultramicroscopy , vol.77 , pp. 141-152
    • Winkler, H.1    Taylor, K.A.2
  • 50
    • 77953811666 scopus 로고    scopus 로고
    • High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (gpus)
    • Xu W., Xu F., Jones M., Keszthelyi B., Sedat J., Agard D., Mueller K. High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (gpus). J. Struct. Biol. 2010, 171:142-153.
    • (2010) J. Struct. Biol. , vol.171 , pp. 142-153
    • Xu, W.1    Xu, F.2    Jones, M.3    Keszthelyi, B.4    Sedat, J.5    Agard, D.6    Mueller, K.7
  • 51
    • 79959477905 scopus 로고    scopus 로고
    • Template-free detection of macromolecular complexes in cryo electron tomograms
    • Xu M., Beck M., Alber F. Template-free detection of macromolecular complexes in cryo electron tomograms. Bioinformatics 2011, 27:69-76.
    • (2011) Bioinformatics , vol.27 , pp. 69-76
    • Xu, M.1    Beck, M.2    Alber, F.3
  • 52
    • 77953613557 scopus 로고    scopus 로고
    • Probabilistic principal component analysis with expectation maximization (ppca-em) facilitates volume classification and estimates the missing data
    • Yu L., Snapp R.R., Ruiz T., Radermacher M. Probabilistic principal component analysis with expectation maximization (ppca-em) facilitates volume classification and estimates the missing data. J. Struct. Biol. 2010, 171:18-30.
    • (2010) J. Struct. Biol. , vol.171 , pp. 18-30
    • Yu, L.1    Snapp, R.R.2    Ruiz, T.3    Radermacher, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.