-
1
-
-
79951541783
-
Fast tomographic reconstruction on multicore computers
-
Agulleiro J.I., Fernández J.J. Fast tomographic reconstruction on multicore computers. Bioinformatics 2011, 27:582-583.
-
(2011)
Bioinformatics
, vol.27
, pp. 582-583
-
-
Agulleiro, J.I.1
Fernández, J.J.2
-
2
-
-
77955086484
-
Subtomogram alignment by adaptive fourier coefficient thresholding
-
Amat F., Comolli L.R., Moussavi F., Smit J., Downing K.H., Horowitz M. Subtomogram alignment by adaptive fourier coefficient thresholding. J. Struct. Biol. 2010, 171:332-344.
-
(2010)
J. Struct. Biol.
, vol.171
, pp. 332-344
-
-
Amat, F.1
Comolli, L.R.2
Moussavi, F.3
Smit, J.4
Downing, K.H.5
Horowitz, M.6
-
3
-
-
0021344602
-
Simultaneous Algebraic Reconstruction Technique (SART): a superior implementation of the ART algorithm
-
Andersen A.H., Kak A.C. Simultaneous Algebraic Reconstruction Technique (SART): a superior implementation of the ART algorithm. Ultrason. Imaging 1984, 6:81-94.
-
(1984)
Ultrason. Imaging
, vol.6
, pp. 81-94
-
-
Andersen, A.H.1
Kak, A.C.2
-
4
-
-
79952331778
-
Metropolis Monte Carlo for tomographic reconstruction with prior smoothness information
-
Barbuzza R., Clausse A. Metropolis Monte Carlo for tomographic reconstruction with prior smoothness information. IET-IPR 2011, 5:198-204.
-
(2011)
IET-IPR
, vol.5
, pp. 198-204
-
-
Barbuzza, R.1
Clausse, A.2
-
5
-
-
44449179947
-
Classification and 3D averaging with missing wedge correction in biological electron tomography
-
Bartesaghi A., Sprechmann P., Liu J., Randall G., Sapiro G., Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. J. Struct. Biol. 2008, 162:436-450.
-
(2008)
J. Struct. Biol.
, vol.162
, pp. 436-450
-
-
Bartesaghi, A.1
Sprechmann, P.2
Liu, J.3
Randall, G.4
Sapiro, G.5
Subramaniam, S.6
-
6
-
-
0000484921
-
Inversion of fan-beam scans in radio astronomy
-
Bracewell R.N., Riddle A.C. Inversion of fan-beam scans in radio astronomy. Astrophys. J. 1967, 150:427-434.
-
(1967)
Astrophys. J.
, vol.150
, pp. 427-434
-
-
Bracewell, R.N.1
Riddle, A.C.2
-
7
-
-
84878527131
-
Structural biology in situ the potential of subtomogram averaging
-
Briggs J.A. Structural biology in situ the potential of subtomogram averaging. Curr. Opin. Struct. Biol. 2013, 23:261-267.
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 261-267
-
-
Briggs, J.A.1
-
8
-
-
84860574289
-
Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-em data in high-performance computing environments
-
Castaño-Díez D., Kudryashev M., Arheit M., Henning S. Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-em data in high-performance computing environments. J. Struct. Biol. 2012, 178:139-151.
-
(2012)
J. Struct. Biol.
, vol.178
, pp. 139-151
-
-
Castaño-Díez, D.1
Kudryashev, M.2
Arheit, M.3
Henning, S.4
-
9
-
-
84894450833
-
Iterative reconstruction of cryo-electron tomograms using nonuniform fast fourier transforms
-
Chen Y., Förster F. Iterative reconstruction of cryo-electron tomograms using nonuniform fast fourier transforms. J. Struct. Biol. 2013, 185(3):309-316.
-
(2013)
J. Struct. Biol.
, vol.185
, Issue.3
, pp. 309-316
-
-
Chen, Y.1
Förster, F.2
-
10
-
-
84878285959
-
Fast and accurate reference-free alignment of subtomograms
-
Chen Y., Pfeffer S., Hrabe T., Schuller J.M., Förster F. Fast and accurate reference-free alignment of subtomograms. J. Struct. Biol. 2013, 182(3):235-245.
-
(2013)
J. Struct. Biol.
, vol.182
, Issue.3
, pp. 235-245
-
-
Chen, Y.1
Pfeffer, S.2
Hrabe, T.3
Schuller, J.M.4
Förster, F.5
-
11
-
-
0014894609
-
The reconstruction of a three-dimensional structure from projections and its application to electron microscopy
-
Crowther R.A., DeRosier D.J., Klug A. The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. Proc. R. Soc. Lond. A. Math. Phys. Sci. 1970, 317:319-340.
-
(1970)
Proc. R. Soc. Lond. A. Math. Phys. Sci.
, vol.317
, pp. 319-340
-
-
Crowther, R.A.1
DeRosier, D.J.2
Klug, A.3
-
12
-
-
41849101999
-
Electron tomography: a short overview with an emphasis on the absorption potential model for the forward problem
-
Fanelli D., Öktem O. Electron tomography: a short overview with an emphasis on the absorption potential model for the forward problem. Inverse Probl. 2008, 24.
-
(2008)
Inverse Probl.
, vol.24
-
-
Fanelli, D.1
Öktem, O.2
-
13
-
-
51549115028
-
High performance computing in structural determination by electron cryomicroscopy
-
Fernández J.J. High performance computing in structural determination by electron cryomicroscopy. J. Struct. Biol. 2008, 164:1-6.
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 1-6
-
-
Fernández, J.J.1
-
14
-
-
84862136069
-
Computational methods for electron tomography
-
Fernández J.J. Computational methods for electron tomography. Micron 2012, 43:1010-1030.
-
(2012)
Micron
, vol.43
, pp. 1010-1030
-
-
Fernández, J.J.1
-
15
-
-
33847232164
-
Structure determination in situ by averaging of tomograms
-
Academic Press, J.R. McIntosh (Ed.) Cellular Electron Microscopy
-
Förster F., Hegerl R. Structure determination in situ by averaging of tomograms. Methods in Cell Biology 2007, vol. 79:741-767. Academic Press. J.R. McIntosh (Ed.).
-
(2007)
Methods in Cell Biology
, vol.79
, pp. 741-767
-
-
Förster, F.1
Hegerl, R.2
-
18
-
-
0019707963
-
Spider a modular software system for electron image processing
-
Frank J., Shimkin B., Dowse H. Spider a modular software system for electron image processing. Ultramicroscopy 1981, 6:343-357.
-
(1981)
Ultramicroscopy
, vol.6
, pp. 343-357
-
-
Frank, J.1
Shimkin, B.2
Dowse, H.3
-
19
-
-
0015372442
-
Iterative methods for the three-dimensional reconstruction of an object from projections
-
Gilbert P. Iterative methods for the three-dimensional reconstruction of an object from projections. J. Theor. Biol. 1972, 36:105-117.
-
(1972)
J. Theor. Biol.
, vol.36
, pp. 105-117
-
-
Gilbert, P.1
-
20
-
-
0015523343
-
The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods
-
Gilbert P.F.C. The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods. Proc. R. Soc. B Biol. Sci. 1972, 182:89-102.
-
(1972)
Proc. R. Soc. B Biol. Sci.
, vol.182
, pp. 89-102
-
-
Gilbert, P.F.C.1
-
21
-
-
0015204559
-
Reconstruction of pictures from their projections
-
Gordon R., Herman G.T. Reconstruction of pictures from their projections. Commun. ACM 1971, 14:759-768.
-
(1971)
Commun. ACM
, vol.14
, pp. 759-768
-
-
Gordon, R.1
Herman, G.T.2
-
22
-
-
84867534029
-
Stochastic tomography and its applications in 3D imaging of mixing fluids
-
Gregson J., Krimerman M., Hullin M.B., Heidrich W. Stochastic tomography and its applications in 3D imaging of mixing fluids. ACM Trans. Graph. 2012, 31:52:1-10.
-
(2012)
ACM Trans. Graph.
, vol.31
, Issue.52
, pp. 1-10
-
-
Gregson, J.1
Krimerman, M.2
Hullin, M.B.3
Heidrich, W.4
-
23
-
-
84945708500
-
Algorithm 247: radical-inverse quasi-random point sequence
-
Halton J.H. Algorithm 247: radical-inverse quasi-random point sequence. Commun. ACM 1964, 7:701-702.
-
(1964)
Commun. ACM
, vol.7
, pp. 701-702
-
-
Halton, J.H.1
-
25
-
-
77956890234
-
Monte carlo sampling methods using Markov chains and their applications
-
Hastings W.K. Monte carlo sampling methods using Markov chains and their applications. Biometrika 1970, 57:97-109.
-
(1970)
Biometrika
, vol.57
, pp. 97-109
-
-
Hastings, W.K.1
-
27
-
-
40649123787
-
Computational resources for cryo-electron tomography in Bsoft
-
Heymann J.B., Cardone G., Winkler D.C., Steven A.C. Computational resources for cryo-electron tomography in Bsoft. J. Struct. Biol. 2008, 161:232-242.
-
(2008)
J. Struct. Biol.
, vol.161
, pp. 232-242
-
-
Heymann, J.B.1
Cardone, G.2
Winkler, D.C.3
Steven, A.C.4
-
28
-
-
84860584901
-
Pytom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis
-
Hrabe T., Chen Y., Pfeffer S., Cuellar L.K., Mangold A.V., Förster F. Pytom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis. J. Struct. Biol. 2012, 178:177-188.
-
(2012)
J. Struct. Biol.
, vol.178
, pp. 177-188
-
-
Hrabe, T.1
Chen, Y.2
Pfeffer, S.3
Cuellar, L.K.4
Mangold, A.V.5
Förster, F.6
-
29
-
-
0001554939
-
Angenäherte auflösung von systemen linearer gleichungen
-
Kaczmarz S. Angenäherte auflösung von systemen linearer gleichungen. Bull. Int. Acad. Pol. Sci. Let. Cl. Med. 1937, A35:355-357.
-
(1937)
Bull. Int. Acad. Pol. Sci. Let. Cl. Med.
, vol.A35
, pp. 355-357
-
-
Kaczmarz, S.1
-
31
-
-
79953668784
-
Fast and high-quality reconstruction in electron tomography based on an enhanced linear forward model
-
Kohr H., Louis A.K. Fast and high-quality reconstruction in electron tomography based on an enhanced linear forward model. Inverse Probl. 2011, 27.
-
(2011)
Inverse Probl.
, pp. 27
-
-
Kohr, H.1
Louis, A.K.2
-
32
-
-
0029879295
-
Computer visualization of three-dimensional image data using IMOD
-
Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 71-76
-
-
Kremer, J.R.1
Mastronarde, D.N.2
McIntosh, J.R.3
-
33
-
-
0000518587
-
An iteration formula for Fredholm integral equations of the first kind
-
Landweber L. An iteration formula for Fredholm integral equations of the first kind. Am. J. Math. 1951, 73:615-624.
-
(1951)
Am. J. Math.
, vol.73
, pp. 615-624
-
-
Landweber, L.1
-
34
-
-
85032751889
-
Cryo-electron tomography of biological specimens
-
Leis A.P., Beck M., Gruska M., Best C., Hegerl R., Baumeister W., Leis J.W. Cryo-electron tomography of biological specimens. Signal Process. Mag. 2006, 23:95-103.
-
(2006)
Signal Process. Mag.
, vol.23
, pp. 95-103
-
-
Leis, A.P.1
Beck, M.2
Gruska, M.3
Best, C.4
Hegerl, R.5
Baumeister, W.6
Leis, J.W.7
-
35
-
-
0023430366
-
Monte Carlo-minimization approach to the multiple-minima problem in protein folding
-
Li Z., Scheraga H.A. Monte Carlo-minimization approach to the multiple-minima problem in protein folding. Proc. Natl. Acad. Sci. 1987, 84:6611-6615.
-
(1987)
Proc. Natl. Acad. Sci.
, vol.84
, pp. 6611-6615
-
-
Li, Z.1
Scheraga, H.A.2
-
36
-
-
0003678262
-
Inverse und schlecht gestellte Probleme
-
(Teubner Studienbucher) (German Edition). B.G. Teubner.
-
Louis, A.K., 1989. Inverse und schlecht gestellte Probleme (Teubner Studienbucher) (German Edition). B.G. Teubner.
-
(1989)
-
-
Louis, A.K.1
-
37
-
-
14844330221
-
Structure studies by electron tomography: from cells to molecules
-
Lucić V., Förster F., Baumeister W. Structure studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74:833-865.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 833-865
-
-
Lucić, V.1
Förster, F.2
Baumeister, W.3
-
38
-
-
0033377664
-
Eman: semiautomated software for high-resolution single-particle reconstructions
-
Ludtke S.J., Baldwin P.R., Chiu W. Eman: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 1999, 128:82-97.
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
39
-
-
84923399408
-
Different conformational states of ribosomes measured by cryo-electron tomography
-
(Unpublished results).
-
Maletta, M., Marsalek, L., Sani, M., Simonetti, A., Fabretti, A., Slusallek, P., Peters, J.P., 2014. Different conformational states of ribosomes measured by cryo-electron tomography. (Unpublished results).
-
(2014)
-
-
Maletta, M.1
Marsalek, L.2
Sani, M.3
Simonetti, A.4
Fabretti, A.5
Slusallek, P.6
Peters, J.P.7
-
40
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis N., Rosenbluth A.W., Rosenbluth M.N., Teller A.H., Teller E. Equation of state calculations by fast computing machines. J. Chem. Phys. 1953, 21:1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
41
-
-
84888087784
-
A cylindrical specimen holder for electron cryo-tomography
-
Palmer C.M., Loewe J. A cylindrical specimen holder for electron cryo-tomography. Ultramicroscopy 2014, 137:20-29.
-
(2014)
Ultramicroscopy
, vol.137
, pp. 20-29
-
-
Palmer, C.M.1
Loewe, J.2
-
42
-
-
0002580515
-
Weighted back-projection methods
-
Plenum Press, New York, J. Frank (Ed.)
-
Radermacher M. Weighted back-projection methods. Electron Tomography 1992, 91-115. Plenum Press, New York. J. Frank (Ed.).
-
(1992)
Electron Tomography
, pp. 91-115
-
-
Radermacher, M.1
-
43
-
-
84985231782
-
Three-dimensional reconstruction from a single-exposure random conical tilt series applied to the 50s ribosomal subunit of Escherichia coli
-
Radermacher M., Wagenknecht T., Verschoor A., Frank J. Three-dimensional reconstruction from a single-exposure random conical tilt series applied to the 50s ribosomal subunit of Escherichia coli. J. Microsc. 1987, 146:113-136.
-
(1987)
J. Microsc.
, vol.146
, pp. 113-136
-
-
Radermacher, M.1
Wagenknecht, T.2
Verschoor, A.3
Frank, J.4
-
45
-
-
0344011098
-
A fast reconstruction algorithm for electron microscope tomography
-
Sandberg K., Mastronarde D.N., Beylkin G. A fast reconstruction algorithm for electron microscope tomography. J. Struct. Biol. 2003, 144:61-72.
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 61-72
-
-
Sandberg, K.1
Mastronarde, D.N.2
Beylkin, G.3
-
46
-
-
71049139404
-
Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
-
Scheres S.H., Melero R., Valle M., Carazo J.M. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure 2009, 17:1563-1572.
-
(2009)
Structure
, vol.17
, pp. 1563-1572
-
-
Scheres, S.H.1
Melero, R.2
Valle, M.3
Carazo, J.M.4
-
47
-
-
0016068330
-
The Fourier reconstruction of a head section
-
Shepp L., Logan B.F. The Fourier reconstruction of a head section. IEEE Trans. Nucl. Sci. 1974, 21:21-43.
-
(1974)
IEEE Trans. Nucl. Sci.
, vol.21
, pp. 21-43
-
-
Shepp, L.1
Logan, B.F.2
-
48
-
-
0030295008
-
Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus
-
Skoglund U., Öfverstedt L.G., Burnett R.M., Bricogne G. Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus. J. Struct. Biol. 1996, 117:173-188.
-
(1996)
J. Struct. Biol.
, vol.117
, pp. 173-188
-
-
Skoglund, U.1
Öfverstedt, L.G.2
Burnett, R.M.3
Bricogne, G.4
-
49
-
-
0033166855
-
Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle
-
Winkler H., Taylor K.A. Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle. Ultramicroscopy 1999, 77:141-152.
-
(1999)
Ultramicroscopy
, vol.77
, pp. 141-152
-
-
Winkler, H.1
Taylor, K.A.2
-
50
-
-
77953811666
-
High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (gpus)
-
Xu W., Xu F., Jones M., Keszthelyi B., Sedat J., Agard D., Mueller K. High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (gpus). J. Struct. Biol. 2010, 171:142-153.
-
(2010)
J. Struct. Biol.
, vol.171
, pp. 142-153
-
-
Xu, W.1
Xu, F.2
Jones, M.3
Keszthelyi, B.4
Sedat, J.5
Agard, D.6
Mueller, K.7
-
51
-
-
79959477905
-
Template-free detection of macromolecular complexes in cryo electron tomograms
-
Xu M., Beck M., Alber F. Template-free detection of macromolecular complexes in cryo electron tomograms. Bioinformatics 2011, 27:69-76.
-
(2011)
Bioinformatics
, vol.27
, pp. 69-76
-
-
Xu, M.1
Beck, M.2
Alber, F.3
-
52
-
-
77953613557
-
Probabilistic principal component analysis with expectation maximization (ppca-em) facilitates volume classification and estimates the missing data
-
Yu L., Snapp R.R., Ruiz T., Radermacher M. Probabilistic principal component analysis with expectation maximization (ppca-em) facilitates volume classification and estimates the missing data. J. Struct. Biol. 2010, 171:18-30.
-
(2010)
J. Struct. Biol.
, vol.171
, pp. 18-30
-
-
Yu, L.1
Snapp, R.R.2
Ruiz, T.3
Radermacher, M.4
|