Detection of mycobacteria, Mycobacterium avium subspecies, and Mycobacterium tuberculosis complex by a novel tetraplex real-time PCR assay

Journal of Clinical Microbiology

Volumn 53, Issue 3, 2015, Pages 930-940

  Sevilla, Iker A ^a   Molina, Elena ^a   Elguezabal, Natalia ^a   Pérez, Valentín ^b   Garrido, Joseba M ^a   Juste, Ramón A ^a  

^a NEIKER and a Vaccine producing Commercial Company CZVSL   (Spain)

^b UNIVERSITY OF LEÓN   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; COLONY FORMING UNIT; CONTROLLED STUDY; DIAGNOSTIC TEST ACCURACY STUDY; DNA CONTENT; GENE AMPLIFICATION; LABORATORY TEST; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM AVIUM SUBSP. HOMINISSUIS; MYCOBACTERIUM BOVIS; MYCOBACTERIUM KANSASII; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEIC ACID ANALYSIS; POLYMERASE CHAIN REACTION SYSTEM; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; TETRAPLEX REAL TIME POLYMERASE CHAIN REACTION; EVALUATION STUDY; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR DIAGNOSIS; MULTIPLEX POLYMERASE CHAIN REACTION; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; TUBERCULOSIS; VETERINARY;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM BOVIS; MYCOBACTERIUM BOVIS BCG; MYCOBACTERIUM KANSASII; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

HUMANS; MOLECULAR DIAGNOSTIC TECHNIQUES; MULTIPLEX POLYMERASE CHAIN REACTION; MYCOBACTERIUM AVIUM; MYCOBACTERIUM TUBERCULOSIS; REAL-TIME POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TUBERCULOSIS;

EID: 84923377869     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.03168-14     Document Type: Article

References (39)

1. Kaneene JB, Miller R, Steele JH, Thoen CO. 2014. Preventing and controlling zoonotic tuberculosis: a One Health approach. Vet Ital 50:7-22. http://dx.doi.org/10.12834/VetIt.1302.08.
2. Hardstaff JL, Marion G, Hutchings MR, White PC. 2014. Evaluating the tuberculosis hazard posed to cattle from wildlife across Europe. Res Vet Sci 97(Suppl):S86-S93. http://dx.doi.org/10.1016/j.rvsc.2013.12.002.
3. Pérez-Lago L, Navarro Y, García-De-Viedma D. 2014. Current knowledge and pending challenges in zoonosis caused by Mycobacterium bovis: a review. Res Vet Sci 97(Suppl):S94-S100. http://dx.doi.org/10.1016/j.rvsc.2013.11.008.
4. Hoefsloot W, Van Ingen J, Andrejak C, Angeby K, Bauriaud R, Bemer P, Beylis N, Boeree MJ, Cacho J, Chihota V, Chimara E, Churchyard G, Cias R, Daza R, Daley CL, Dekhuijzen PN, Domingo D, Drobniewski F, Esteban J, Fauville-Dufaux M, Folkvardsen DB, Gibbons N, Gomez-Mampaso E, Gonzalez R, Hoffmann H, Hsueh PR, Indra A, Jagielski T, Jamieson F, Jankovic M, Jong E, Keane J, Koh WJ, Lange B, Leao S, Macedo R, Mannsaker T, Marras TK, Maugein J, Milburn HJ, Mlinko T, Morcillo N, Morimoto K, Papaventsis D, Palenque E, Paez-Pena M, Piersimoni C, Polanova M, Rastogi N, Richter E, Ruiz-Serrano MJ, et al. 2013. The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study. Eur Respir J 42:1604-1613. http://dx.doi.org/10.1183/09031936.00149212.
5. Turenne CY, Wallace R, Jr, Behr MA. 2007. Mycobacterium avium in the postgenomic era. Clin Microbiol Rev 20:205-229. http://dx.doi.org/10.1128/CMR.00036-06.
6. Bruijnesteijn Van Coppenraet LE, De Haas PE, Lindeboom JA, Kuijper EJ, Van Soolingen D. 2008. Lymphadenitis in children is caused by Mycobacterium avium hominissuis and not related to 'bird tuberculosis'. Eur J Clin Microbiol Infect Dis 27:293-299. http://dx.doi.org/10.1007/s10096-007-0440-z.
7. Despierres L, Cohen-Bacrie S, Richet H, Drancourt M. 2012. Diversity of Mycobacterium avium subsp. hominissuis mycobacteria causing lymphadenitis, France. Eur J Clin Microbiol Infect Dis 31:1373-1379. http://dx.doi.org/10.1007/s10096-011-1452-2.
8. Agdestein A, Olsen I, Jørgensen A, Djønne B, Johansen TB. 2014. Novel insights into transmission routes of Mycobacterium avium in pigs and possible implications for human health. Vet Res 45:46. http://dx.doi.org/10.1186/1297-9716-45-46.
9. Dvorska L, Matlova L, Bartos M, Parmova I, Bartl J, Svastova P, Bull TJ, Pavlik I. 2004. Study of Mycobacterium avium complex strains isolated from cattle in the Czech Republic between 1996 and 2000. Vet Microbiol 99:239-250. http://dx.doi.org/10.1016/j.vetmic.2004.01.008.
10. Glawischnig W, Steineck T, Spergser J. 2006. Infections caused by Mycobacterium avium subspecies avium, hominissuis, and paratuberculosis in free-ranging red deer (Cervus elaphus hippelaphus) in Austria, 2001-2004. J Wildl Dis 42:724-731. http://dx.doi.org/10.7589/0090-3558-42.4.724.
11. Falkinham JO, III. 2009. Surrounded by mycobacteria: nontuberculous mycobacteria in the human environment. J Appl Microbiol 107:356-367. http://dx.doi.org/10.1111/j.1365-2672.2009.04161.x.
12. Chiodini RJ, Chamberlin WM, Sarosiek J, McCallum RW. 2012. Crohn's disease and the mycobacterioses: a quarter century later. Causation or simple association? Crit Rev Microbiol 38:52-93. http://dx.doi.org/10.3109/1040841X.2011.638273.
13. Lombard JE. 2011. Epidemiology and economics of paratuberculosis. Vet Clin North Am Food Anim Pract 27:525-535. http://dx.doi.org/10.1016/j.cvfa.2011.07.012.
14. Muñoz-Mendoza M, Marreros N, Boadella M, Gortázar C, Menéndez S, De Juan L, Bezos J, Romero B, Copano MF, Amado J, Sáez JL, Mourelo J, Balseiro A. 2013. Wild boar tuberculosis in Iberian Atlantic Spain: a different picture from Mediterranean habitats. BMC Vet Res 9:176. http://dx.doi.org/10.1186/1746-6148-9-176.
15. Tran QT, Han XY. 2014. Subspecies identification and significance of 257 clinical strains of Mycobacterium avium. J Clin Microbiol 52:1201-1206. http://dx.doi.org/10.1128/JCM.03399-13.
16. Álvarez J, De Juan L, Bezos J, Romero B, Sáez JL, Reviriego Gordejo FJ, Briones V, Moreno MA, Mateos A, Domínguez L, Aranaz A. 2008. Interference of paratuberculosis with the diagnosis of tuberculosis in a goat flock with a natural mixed infection. Vet Microbiol 128:72-80. http://dx.doi.org/10.1016/j.vetmic.2007.08.034.
17. Aranaz A, De Juan L, Bezos J, Álvarez J, Romero B, Lozano F, Paramio JL, López-Sánchez J, Mateos A, Domínguez L. 2006. Assessment of diagnostic tools for eradication of bovine tuberculosis in cattle co-infected with Mycobacterium bovis and M. avium subsp. paratuberculosis. Vet Res 37:593-606. http://dx.doi.org/10.1051/vetres:2006021.
18. Sharma K, Sharma A, Modi M, Singh G, Kaur H, Varma S, Sharma M. 2012. PCR detection of co-infection with Mycobacterium tuberculosis and Mycobacterium avium in AIDS patients with meningitis. J Med Microbiol 61:1789-1791. http://dx.doi.org/10.1099/jmm.0.045898-0.
19. Miller M, Olea-Popelka F. 2013. One Health in the shrinking world: experiences with tuberculosis at the human-livestock-wildlife interface. Comp Immunol Microbiol Infect Dis 36:263-268. http://dx.doi.org/10.1016/j.cimid.2012.07.005.
20. Gopinath K, Singh S. 2009. Multiplex PCR assay for simultaneous detection and differentiation of Mycobacterium tuberculosis, Mycobacterium avium complexes and other mycobacterial species directly from clinical specimens. J Appl Microbiol 107:425-435. http://dx.doi.org/10.1111/j.1365-2672.2009.04218.x.
21. Hallur V, Sharma M, Sethi S, Sharma K, Mewara A, Dhatwalia S, Yadav R, Bhasin D, Sinha SK, Rana S, Joshi K. 2013. Development and evaluation of multiplexPCRin rapid diagnosis of abdominal tuberculosis. Diagn Microbiol Infect Dis 76:51-55. http://dx.doi.org/10.1016/j.diagmicrobio.2013.02.022.
22. Hussein Z, Landt O, Wirths B, Wellinghausen N. 2009. Detection of non-tuberculous mycobacteria in hospital water by culture and molecular methods. Int J Med Microbiol 299:281-290. http://dx.doi.org/10.1016/j.ijmm.2008.07.004.
23. Nasr Esfahani B, Rezaei Yazdi H, Moghim S, Ghasemian Safaei H, Zarkesh Esfahani H. 2012. Rapid and accurate identification of Mycobacterium tuberculosis complex and common non-tuberculous mycobacteria by multiplex real-time PCR targeting different housekeeping genes. Curr Microbiol 65:493-499. http://dx.doi.org/10.1007/s00284-012-0188-2.
24. Park H, Kim C, Park KH, Chang CL. 2006. Development and evaluation of triplex PCR for direct detection of mycobacteria in respiratory specimens. J Appl Microbiol 100:161-167. http://dx.doi.org/10.1111/j.1365-2672.2005.02719.x.
25. Richardson ET, Samson D, Banaei N. 2009. Rapid identification of Mycobacterium tuberculosis and nontuberculous mycobacteria by multiplex, real-time PCR. J Clin Microbiol 47:1497-1502. http://dx.doi.org/10.1128/JCM.01868-08.
26. Shin SJ, Lee BS, Koh WJ, Manning EJ, Anklam K, Sreevatsan S, Lambrecht RS, Collins MT. 2010. Efficient differentiation of Mycobacterium avium complex species and subspecies by use of five-target multiplex PCR. J Clin Microbiol 48:4057-4062. http://dx.doi.org/10.1128/JCM.00904-10.
27. Tran AC, Halse TA, Escuyer VE, Musser KA. 2014. Detection of Mycobacterium avium complex DNA directly in clinical respiratory specimens: opportunities for improved turn-around time and cost savings. Diagn Microbiol Infect Dis 79:43-48. http://dx.doi.org/10.1016/j.diagmicrobio.2014.01.019.
28. Haldar S, Sharma N, Gupta VK, Tyagi JS. 2009. Efficient diagnosis of tuberculous meningitis by detection of Mycobacterium tuberculosis DNA in cerebrospinal fluid filtrates using PCR. J Med Microbiol 58:616-624. http://dx.doi.org/10.1099/jmm.0.006015-0.
29. Elguezabal N, Bastida F, Sevilla IA, González N, Molina E, Garrido JM, Juste RA. 2011. Estimation of Mycobacterium avium subsp. paratuberculosis growth parameters: strain characterization and comparison of methods. Appl Environ Microbiol 77:8615-8624. http://dx.doi.org/10.1128/AEM.05818-11.
30. Sevilla IA, Garrido JM, Molina E, Geijo MV, Elguezabal N, Vázquez P, Juste RA. 2014. Development and evaluation of a novel multicopyelementtargeting triplex PCR for detection of Mycobacterium avium subsp. paratuberculosis in feces. Appl Environ Microbiol 80:3757-3768. http://dx.doi.org/10.1128/AEM.01026-14.
31. Whittington RJ, Marsh IB, Saunders V, Grant IR, Juste R, Sevilla I, Manning EJ, Whitlock RH. 2011. Culture phenotypes of genomically and geographically diverse Mycobacterium avium subsp. paratuberculosis isolates from different hosts. J Clin Microbiol 49:1822-1830. http://dx.doi.org/10.1128/JCM.00210-11.
32. Wilton S, Cousins D. 1992. Detection and identification of multiple mycobacterial pathogens by DNA amplification in a single tube. PCR Methods Appl 1:269-273. http://dx.doi.org/10.1101/gr.1.4.269.
33. Bartos M, Hlozek P, Svastova P, Dvorska L, Bull T, Matlova L, Parmova I, Kuhn I, Stubbs J, Moravkova M, Kintr J, Beran V, Melicharek I, Ocepek M, Pavlik I. 2006. Identification of members of Mycobacterium avium species by Accu-Probes, serotyping, and single IS900, IS901, IS1245 and IS901-flanking regionPCRwith internal standards. J Microbiol Methods 64:333-345. http://dx.doi.org/10.1016/j.mimet.2005.05.009.
34. Eisenach KD, Cave MD, Bates JH, Crawford JT. 1990. Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis. J Infect Dis 161:977-981. http://dx.doi.org/10.1093/infdis/161.5.977.
35. Rodriguez JG, Fissanoti JC, Del Portillo P, Patarroyo ME, Romano MI, Cataldi A. 1999. Amplification of a 500-base-pair fragment from cultured isolates of Mycobacterium bovis. J Clin Microbiol 37:2330-2332.
36. Richter E, Niemann S, Rusch-Gerdes S, Hoffner S. 1999. Identification of Mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques. J Clin Microbiol 37:964-970.
37. Bruijnesteijn Van Coppenraet ES, Lindeboom JA, Prins JM, Peeters MF, Claas EC, Kuijper EJ. 2004. Real-time PCR assay using fine-needle aspirates and tissue biopsy specimens for rapid diagnosis of mycobacterial lymphadenitis in children. J Clin Microbiol 42:2644-2650. http://dx.doi.org/10.1128/JCM.42.6.2644-2650.2004.
38. Tobler NE, Pfunder M, Herzog K, Frey JE, Altwegg M. 2006. Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray. J Microbiol Methods 66:116-124. http://dx.doi.org/10.1016/j.mimet.2005.10.016.
39. Pérez-Osorio AC, Boyle DS, Ingham ZK, Ostash A, Gautom RK, Colombel C, Houze Y, Leader BT. 2012. Rapid identification of mycobacteria and drug-resistant Mycobacterium tuberculosis by use of a single multiplex PCR and DNA sequencing. J Clin Microbiol 50:326-336. http://dx.doi.org/10.1128/JCM.05570-11.