Correlative microscopy for nanomanipulation of sub-cellular structures

Proceedings - IEEE International Conference on Robotics and Automation

Volumn , Issue , 2014, Pages 5209-5214

  Gong, Z ^b   Chen, B K ^b   Liu, J ^b   Zhou, C ^b   Anchel, D ^a   Li, X ^b   Bazett Jones, D P ^a   Sun, Y ^b  

^a HOSPITAL FOR SICK CHILDREN   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR AUTOMATA; DNA; FLUORESCENCE IMAGING; FLUORESCENCE MICROSCOPY; IMAGE ANALYSIS; NANOTECHNOLOGY; SCANNING ELECTRON MICROSCOPY;

CORRELATIVE MICROSCOPIES; ENABLING TECHNIQUES; FLUORESCENCE CORRELATION; FLUORESCENCE MICROSCOPY IMAGES; IMAGE CORRELATION TECHNIQUES; IMAGE CORRELATIONS; IMAGING CONDITIONS; TARGET IDENTIFICATION;

MICROMANIPULATORS;

EID: 84923296028     PISSN: 10504729     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICRA.2014.6907624     Document Type: Conference Paper

References (20)

1. T. M. Yusufzai, H. Tagami, Y. Nakatani, and G. Felsenfeld, "{CTCF} tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species, " Molecular Cell, vol. 13, no. 2, pp. 291-298, 2004.
2. S. Schoenfelder, T. Sexton, L. Chakalova, N. F. Cope, A. Horton, S. Andrews, S. Kurukuti, J. A. Mitchell, D. Umlauf, D. S. Dimitrova, C. H. Eskiw, Y. Luo, C.-L. Wei, Y. Ruan, J. J. Bieker, and P. Fraser, "Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells, " Nature Genetics, vol. 42, no. 1, pp. 53-61, 2009.
3. C. Osborne and C. Eskiw, "Where shall we meet? a role for genome organisation and nuclear sub-compartments in mediating interchromosomal interactions." Journal of Cellular Biochemistry, vol. 104, no. 5, pp. 1553-1561, 2008.
4. B. K. Chen, D. Anchel, Y. Sun, and D. P. Bazett-Jones, "Nanodissection and identification of gene loci from single cells." September 2013, submitted to Nature Methods.
5. H. G. Hansma, J. Vesenka, C. Siegerist, G. Kelderman, H. Morrett, R. L. Sinsheimer, V. Elings, C. Bustamante, and P. K. Hansma, "Reproducible imaging and dissection of plasmid dna under liquid with the atomic force microscope, " Science, vol. 256, no. 5060, pp. 1180-1184, 1992.
6. J. Hu, Y. Zhang, H. Gao, M. Li, and U. Hartmann, "Artificial dna patterns by mechanical nanomanipulation, " Nano Letters, vol. 2, no. 1, pp. 55-57, 2002.
7. J. Lü, H. An, H. Li, X. Li, Y. Wang, M. Li, Y. Zhang, and J. Hu, "Nanodissection, isolation, and pcr amplification of single dna molecules, " Surface and Interface Analysis, vol. 38, no. 6, pp. 1010-1013, 2006.
8. B. G. Kopek, G. Shtengel, C. S. Xu, D. A. Clayton, and H. F. Hess, "Correlative 3d superresolution fluorescence and electron microscopy reveal the relationship of mitochondrial nucleoids to membranes, " Proceedings of the National Academy of Sciences, vol. 109, no. 16, pp. 6136-6141, 2012.
9. W. Kukulski, M. Schorb, S. Welsch, A. Picco, M. Kaksonen, and J. A. G. Briggs, "Correlated fluorescence and 3d electron microscopy with high sensitivity and spatial precision, " The Journal of cell biology, vol. 192, no. 1, pp. 111-119, 2011.
10. S. Watanabe, A. Punge, G. Hollopeter, K. I. Willig, R. J. Hobson, M. W. Davis, S. W. Hell, and E. M. Jorgensen, "Protein localization in electron micrographs using fluorescence nanoscopy, " Nature Methods, vol. 8, no. 1, pp. 80-84, 2010.
11. D. N. Fronczek, C. Quammen, H. Wang, C. Kisker, R. Superfine, R. Taylor, D. A. Erie, and I. Tessmer, "High accuracy fiona-afm hybrid imaging, " Ultramicroscopy, vol. 111, no. 5, pp. 350-355, 2011.
12. T. Cao, C. Zach, S. Modla, D. Powell, K. Czymmek, and M. Niethammer, "Registration for correlative microscopy using image analogies, " in Proceedings of the 5th international conference on Biomedical Image Registration, 2012, pp. 296-306.
13. S. Halary, S. Duperron, and T. Boudier, "Direct image-based correlative microscopy technique for coupling identification and structural investigation of bacterial symbionts associated with metazoans, " Applied and Environmental Microbiology, vol. 77, no. 12, pp. 4172-4179, 2011.
14. D. G. Lowe, "Distinctive image features from scale-invariant keypoints, " Int. J. Comput. Vision, vol. 60, no. 2, pp. 91-110, Nov. 2004.
15. K. Mikolajczyk and C. Schmid, "A performance evaluation of local descriptors, " IEEE Trans. Pattern Anal. Mach. Intell., vol. 27, no. 10, pp. 1615-1630, 2005.
16. J.-M. Morel and G. Yu, "Asift: A new framework for fully affine invariant image comparison, " SIAM J. Img. Sci., vol. 2, no. 2, pp. 438-469, Apr. 2009.
17. Y. L. Zhang, Y. Zhang, C. Ru, B. K. Chen, and Y. Sun, "A loadlock-compatible nanomanipulation system for scanning electron microscope, " IEEE/ASME Transactions on Mechatronics, vol. PP, no. 99, pp. 1-8, 2011.
18. Z. Gong, B. K. Chen, J. Liu, and Y. Sun, "Robotic probing of nano structures inside scanning electron microscopy, " IEEE Transactions on Robotics, accepted for publication, 2014.
19. E. Schönherr and E. Winckler, "A sample holder for measuring the interfacial angles of small crystals using a scanning electron microscope, " Journal of Crystal Growth, vol. 36, no. 2, pp. 353-354, 1976.
20. A. Buades, B. Coll, and J.-M. Morel, "A non-local algorithm for image denoising, " in Computer Vision and Pattern Recognition, 2005. CVPR 2005. IEEE Computer Society Conference on, vol. 2, june 2005, pp. 60-65.