Metabolomics deciphers quantitative resistance mechanisms in diploid potato clones against late blight

Functional Plant Biology

Volumn 42, Issue 3, 2015, Pages 284-298

  Yogendra, Kalenahalli N ^a   Kushalappa, Ajjamada C ^a   Sarmiento, Felipe ^b   Rodriguez, Ernesto ^b   Mosquera, Teresa ^b  

^a MCGILL UNIVERSITY   (Canada)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

Author keywords

Phytophthora infestans; single nucleotide polymorphism; Solanum tuberosum L

Indexed keywords

BIOCHEMICAL COMPOSITION; CLONE; DISEASE RESISTANCE; FUNGAL DISEASE; GENETIC VARIATION; GENOTYPE; MASS SPECTROMETRY; METABOLISM; METABOLITE; POLYMORPHISM; POTATO; QUANTITATIVE ANALYSIS;

PHYTOPHTHORA INFESTANS; SOLANUM PHUREJA; SOLANUM TUBEROSUM;

EID: 84923108977     PISSN: 14454408     EISSN: 14454416     Source Type: Journal    
DOI: 10.1071/FP14177     Document Type: Article

References (50)

1. Bassard JE, Ullmann P, Bernier F, Werck-Reichhart D (2010) Phenolamides: bridging polyamines to the phenolic metabolism. Phytochemistry 71, 1808-1824. doi:10.1016/j.phytochem.2010.08.003
2. Bellincampi D, Cervone F, Lionetti V (2014) Plant cell wall dynamics and wall-related susceptibility in plant-pathogen interactions. Frontier in Plant Science 5, 228.
3. Bethke G, Grundman RE, Sreekanta S, Truman W, Katagiri F, Glazebrook J (2014) Arabidopsis pectin methylesterases contribute to immunity against Pseudomonas syringae. Plant Physiology 164, 1093-1107. doi:10.1104/pp.113.227637
4. Bollina V, Kushalappa AC (2011) In vitro inhibition of trichothecene biosynthesis in Fusarium graminearum by resistance-related endogenous metabolites identified in barley. Mycology 2, 291-296.
5. Bollina V, Kumaraswamy GK, Kushalappa AC, Choo TM, Dion Y, Rioux S, Faubert D, Hamzehzarghani H (2010) Mass spectrometry based metabolomics application to identify quantitative resistance related metabolites in barley against Fusarium head blight. Molecular Plant Pathology 11, 769-782.
6. Bollina V, Kushalappa AC, Choo TM, Dion Y, Rioux S (2011) Identification of metabolites related to mechanisms of resistance in barley against Fusarium graminearum, based on mass spectrometry. Plant Molecular Biology 77, 355-370. doi:10.1007/s11103-011-9815-8
7. Campbell CL, Madden LV (1990) 'Introduction to plant disease epidemiology.' (John Wiley & Sons: New York)
8. Capriotti E, Fariselli P, Casadio R (2005) I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Research 33, W306-W310. doi:10.1093/nar/gki375
9. Caten C, Jinks J (1968) Spontaneous variability of single isolates of Phytophthora infestans. I. Cultural variation. Canadian Journal of Botany 46, 329-348. doi:10.1139/b68-055
10. Chamarthi SK, Kumar K, Gunnaiah R, Kushalappa AC, Dion Y, Choo TM (2014) Identification of fusarium head blight resistance related metabolites specific to doubled-haploid lines in barley. European Journal of Plant Pathology 138, 67-78. doi:10.1007/s10658-013- 0302-8
11. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Research 16, 10 881-10 890. doi:10.1093/nar/16.22.10881
12. Dangl JL, Horvath DM, Staskawicz BJ (2013) Pivoting the plant immune system from dissection to deployment. Science 341, 746-751. doi:10.1126/science.1236011
13. De Vos RC, Moco S, Lommen A, Keurentjes JJ, Bino RJ, Hall RD (2007) Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nature Protocols 2, 778-791. doi:10.1038/nprot.2007.95
14. Draffehn AM, Li L, Krezdorn N, Ding J, Lübeck J, Strahwald J, Muktar MS, Walkemeier B, Rotter B, Gebhardt C (2013) Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity. Frontiers in Plant Science 4, 423. doi:10.3389/fpls.2013.00423
15. FiehnO(2001) Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks. Comparative and Functional Genomics 2, 155-168. doi:10.1002/cfg.82
16. Franke RB, Dombrink I, Schreiber L (2012) Suberin goes genomics: use of a short living plant to investigate a long lasting polymer. Frontiers in Plant Science 3, 4. doi:10.3389/fpls.2012.00004
17. Fry W (2008) Phytophthora infestans: the plant (and R gene) destroyer. Molecular Plant Pathology 9, 385-402. doi:10.1111/j.1364-3703.2007. 00465.x
18. Gebhardt C (2013) Bridging the gap between genome analysis and precision breeding in potato. Trends in Genetics 29, 248-256. doi:10.1016/j.tig.2012.11.006
19. Grąca J (2010) Hydroxycinnamates in suberin formation. Phytochemistry Reviews 9, 85-91. doi:10.1007/s11101-009-9138-4
20. Gunnaiah R, Kushalappa AC (2014) Metabolomics deciphers the host resistance mechanisms in wheat cultivar Sumai-3, against trichothecene producing and non-producing isolates of Fusarium graminearum. Plant Physiology and Biochemistry 83, 40-50. doi:10.1016/j.plaphy.2014.07.002
21. Gunnaiah R, Kushalappa AC, Duggavathi R, Fox S, Somers DJ (2012) Integrated metabolo-proteomic approach to decipher the mechanisms by which wheat QTL (Fhb1) contributes to resistance against Fusarium graminearum. PLoS ONE 7, e40695. doi:10.1371/journal.pone.0040695
22. Gyetvai G, Sønderk'r M, Göbel U, Basekow R, Ballvora A, Imhoff M, Kersten B, Nielsen KL, Gebhardt C (2012) The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by deepSAGE analysis. PLoS ONE 7, e31526. doi:10.1371/journal.pone.0031526
23. Hagel JM, Facchini PJ (2013) Benzylisoquinoline alkaloid metabolism: a century of discovery and a brave new world. Plant & Cell Physiology 54, 647-672. doi:10.1093/pcp/pct020
24. Hemleben V, Dressel A, Epping B, Lukacin R, Martens S, Austin M (2004) Characterization and structural features of a chalcone synthase mutation in a white-flowering line of Matthiola incana R.Br. (Brassicaceae). Plant Molecular Biology 55, 455-465. doi:10.1007/s11103-004-1125-y
25. Kou Y, Wang S (2010) Broad-spectrum and durability: understanding of quantitative disease resistance. Current Opinion in Plant Biology 13, 181-185. doi:10.1016/j.pbi.2009.12.010
26. Kumaraswamy GK, Kushalappa AC, Choo TM, Dion Y, Rioux S (2011) Mass spectrometry based metabolomics to identify potential biomarkers for resistance in barley against fusarium head blight (Fusarium graminearum). Journal of Chemical Ecology 37, 846-856. doi:10.1007/s10886-011-9989-1
27. Kumaraswamy GK, Kushalappa AC, Choo T, Dion Y, Rioux S (2012) Differential metabolic response of barley genotypes, varying in resistance, to trichothecene-producing and-nonproducing (tri5) isolates of Fusarium graminearum. Plant Pathology 61, 509-521.doi:10.1111/j.1365-3059.2011.02528.x
28. Kushalappa AC, Gunnaiah R (2013) Metabolo-proteomics to discover plant biotic stress resistance genes. Trends in Plant Science 18, 522-531. doi:10.1016/j.tplants.2013.05.002
29. Lindqvist-Kreuze H, Carbajulca D, Gonzalez-Escobedo G, Perez W, Bonierbale M (2010) Comparison of transcript profiles in late blight challenged Solanum cajamarquense and B3C1 potato clones. Molecular Plant Pathology 11, 513-530. doi:10.1111/j.1364-3703.2010.00622.x
30. Liu Z, Halterman D (2009) Analysis of proteins differentially accumulated during potato late blight resistance mediated by the RB resistance gene. Physiological and Molecular Plant Pathology 74, 151-160. doi:10.1016/j.pmpp.2009.11.001
31. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-DDCT method. Methods 25, 402-408. doi:10.1006/meth.2001.1262
32. López-Gresa MP, Torres C, Campos L, Lisón P, Rodrigo I, Bellés JM, Conejero V (2011) Identification of defence metabolites in tomato plants infected by the bacterial pathogen Pseudomonas syringae. Environmental and Experimental Botany 74, 216-228. doi:10.1016/j.envexpbot.2011.06.003
33. Ma Z, Michailides TJ (2005) Advances in understanding molecular mechanisms of fungicide resistance and molecular detection of resistant genotypes in phytopathogenic fungi. Crop Protection 24, 853-863. doi:10.1016/j.cropro.2005.01.011
34. Morimoto S, Suemori K, Moriwaki J, Taura F, Tanaka H, Aso M, Tanaka M, Suemune H, Shimohigashi Y, Shoyama Y (2001) Morphine metabolism in the opium poppy and its possible physiological function biochemical characterization of the morphine metabolite, bismorphine. Journal of Biological Chemistry 276, 38 179-38 184.
35. Morimoto S, Suemori K, Taura F, Shoyama Y (2003) New dimeric morphine from opium poppy (Papaver somuniferum) and its physiological function. Journal of Natural Products 66, 987-989. doi:10.1021/np020583l
36. Nagy NE, Fossdal CG, Krokene P, Krekling T, Lönneborg A, Solheim H (2004) Induced responses to pathogen infection in Norway spruce phloem: changes in polyphenolic parenchyma cells, chalcone synthase transcript levels and peroxidase activity. Tree Physiology 24, 505-515.doi:10.1093/treephys/24.5.505
37. Nicot N, Hausman JF, Hoffmann L, Evers D (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of Experimental Botany 56, 2907-2914.doi:10.1093/jxb/eri285
38. Pluskal T, Castillo S, Villar-Briones A, OrešicM(2010) MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometrybased molecular profile data. BMC Bioinformatics 11, 395. doi:10.1186/1471-2105-11-395
39. Pushpa D, Yogendra KN, Gunnaiah R, Kushalappa AC, Murphy A (2014) Identification of late blight resistance-related metabolites and genes in potato through nontargeted metabolomics. Plant Molecular Biology Reporter 32, 584-595. doi:10.1007/s11105-013-0665-1
40. Raja Abdul Rahman RNZ, Zakaria II, Salleh AB, Basri M (2012) Enzymatic properties and mutational studies of chalcone synthase from physcomitrella patens. International Journal of Molecular Sciences 13, 9673-9691. doi:10.3390/ijms13089673
41. Ranathunge K, Schreiber L, Franke R (2011) Suberin research in the genomics era-new interest for an old polymer. Plant Science 180, 399-413. doi:10.1016/j.plantsci.2010.11.003
42. Royal Horticultural Society (1986) RHS colour chart. (Royal Hort. Soc.: London, UK)
43. Saito K, Yonekura-Sakakibara K, Nakabayashi R, Higashi Y, Yamazaki M, Tohge T, Fernie AR (2013) The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity. Plant Physiology and Biochemistry 72, 21-34. doi:10.1016/j.plaphy.2013.02.001
44. Soylu S (2006) Accumulation of cell-wall bound phenolic compounds and phytoalexin in Arabidopsis thaliana leaves following inoculation with pathovars of Pseudomonas syringae. Plant Science 170, 942-952. doi:10.1016/j.plantsci.2005.12.017
45. Treutter D (2006) Significance of flavonoids in plant resistance: a review. Environmental Chemistry Letters 4, 147-157. doi:10.1007/s10311-006-0068-8
46. Venisse JS, Malnoy M, Faize M, Paulin JP, Brisset MN (2002) Modulation of defense responses of Malus spp. during compatible and incompatible interactions with Erwinia amylovora. Molecular Plant-Microbe Interactions 15, 1204-1212. doi:10.1094/MPMI.2002.15.12.1204
47. Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL (2012) Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13, 134. doi:10.1186/1471-2105-13-134
48. Yogendra KN, Pushpa D, Mosa KA, Kushalappa AC, Murphy A, Mosquera T (2014) Quantitative resistance in potato leaves to late blight associated with induced hydroxycinnamic acid amides. Functional & Integrative Genomics 14, 285-298. doi:10.1007/s10142-013-0358-8
49. Zacarés L, López-Gresa MP, Fayos J, Primo J, Bellés JM, Conejero V (2007) Induction of p-coumaroyldopamine and feruloyldopamine, two novel metabolites, in tomato by the bacterial pathogen Pseudomonas syringae. Molecular Plant-Microbe Interactions 20, 1439-1448. doi:10.1094/MPMI-20-11-1439
50. Ziegler J, Facchini PJ, Geissler R, Schmidt J, Ammer C, Kramell R, Voigtländer S, Gesell A, Pienkny S, Brandt W (2009) Evolution of morphine biosynthesis in opium poppy. Phytochemistry 70, 1696-1707. doi:10.1016/j.phytochem.2009.07.006