Circulation of reassortant influenza A(H7N9) viruses in poultry and humans, Guangdong Province, China, 2013

Emerging Infectious Diseases

Volumn 20, Issue 12, 2014, Pages 2034-2040

  Ke, Changwen ^a   Lu, Jing ^a   Wu, Jie ^a   Guan, Dawei ^a   Zou, Lirong ^a   Song, Tie ^a   Yi, Lina ^a   Zeng, Xianqiao ^a   Liang, Lijun ^a   Ni, Hanzhong ^a   Kang, Min ^a   Zhang, Xin ^a   Zhong, Haojie ^a   He, Jianfeng ^a   Lin, Jinyan ^a   Smith, Derek ^b   Burke, David ^b   Fouchier, Ron A M ^c   Koopmans, Marion ^c,d   Zhang, Yonghui ^a  

^a GUANGZHOU CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c ERASMUS MEDICAL CENTER   (Netherlands)

^d NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOPROTEIN; SIALIDASE; INFLUENZA VIRUS HEMAGGLUTININ; NA PROTEIN, INFLUENZA A VIRUS; VIRAL PROTEIN;

ADULT; ANIMAL TISSUE; ARTICLE; CHINA; CONTROLLED STUDY; FEMALE; GENE SEQUENCE; HEMAGGLUTINATION; HUMAN; INFLUENZA VIRUS A H7N9; MALE; NONHUMAN; PHYLOGENY; PNEUMONIA; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SERODIAGNOSIS; VIRUS TRANSMISSION; YOUNG ADULT; ADOLESCENT; AGED; ANIMAL; CLASSIFICATION; ENVIRONMENTAL MONITORING; GENETIC REASSORTMENT; GENETICS; HEALTH SURVEY; HIGH THROUGHPUT SEQUENCING; INFLUENZA A VIRUS (H7N9); INFLUENZA IN BIRDS; INFLUENZA, HUMAN; MEDICAL GEOGRAPHY; MIDDLE AGED; PHYLOGEOGRAPHY; POULTRY; VIROLOGY; VIRUS GENOME;

ADOLESCENT; ADULT; AGED; ANIMALS; CHINA; ENVIRONMENTAL MONITORING; FEMALE; GENOME, VIRAL; GEOGRAPHY, MEDICAL; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; INFLUENZA A VIRUS, H7N9 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; MALE; MIDDLE AGED; NEURAMINIDASE; PHYLOGENY; PHYLOGEOGRAPHY; POULTRY; PUBLIC HEALTH SURVEILLANCE; REASSORTANT VIRUSES; VIRAL PROTEINS; YOUNG ADULT;

EID: 84922903663     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid2012.140765     Document Type: Article

References (18)

1. Chen Y, Liang W, Yang S, Wu N, Gao H, Sheng J, et al. Human infections with the emerging avian influenza A H7N9 virus from wet market poultry: clinical analysis and characterisation of viral genome. Lancet. 2013;381:1916–25. http://dx.doi.org/10.1016/S0140-6736(13)60903-4
2. Gao R, Cao B, Hu Y, Feng Z, Wang D, Hu W, et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med. 2013;368:1888–97. http://dx.doi.org/10.1056/NEJMoa1304459
3. Gao HN, Lu HZ, Cao B, Du B, Shang H, Gan JH, et al. Clinical findings in 111 cases of influenza A (H7N9) virus infection. N Engl J Med. 2013;368:2277–85. http://dx.doi.org/10.1056/NEJMoa1305584
4. Wu A, Su C, Wang D, Peng Y, Liu M, Hua S, et al. Sequential reassortments underlie diverse influenza H7N9 genotypes in China. Cell Host Microbe. 2013;14:446–52. http://dx.doi.org/10.1016/j.chom.2013.09.001
5. Lam TT, Wang J, Shen Y, Zhou B, Duan L, Cheung CL, et al. The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature. 2013;502:241–4. http://dx.doi. org/10.1038/nature12515
6. Pantin-Jackwood MJ, Miller PJ, Spackman E, Swayne DE, Susta L, Costa-Hurtado M, et al. Role of poultry in spread of novel H7N9 influenza virus in China. J Virol. 2014;88:5381–90. http://dx.doi.org/10.1128/JVI.03689-13
7. Cui L, Liu D, Shi W, Pan J, Qi X, Li X, et al. Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus. Nat Commun. 2014;5:3142. http://dx.doi. org/10.1038/ncomms4142
8. Ai J, Huang Y, Xu K, Ren D, Qi X, Ji H, et al. Case-control study of risk factors for human infection with influenza A(H7N9) virus in Jiangsu Province, China, 2013. Euro Surveill. 2013;18:20510. http://dx.doi.org/10.2807/1560-7917.ES2013.18.26.20510
9. Yu X, Jin T, Cui Y, Pu X, Li J, Xu J, et al. Coexistence of influenza H7N9 and H9N2 in poultry linked to human H7N9 infection and their genome characteristics. J Virol. 2014;88:3423–31. http://dx.doi.org/10.1128/JVI.02059-13
10. Huang K, Zhu H, Fan X, Wang J, Cheung CL, Duan L, et al. Establishment and lineage replacement of H6 influenza viruses in domestic ducks in southern China. J Virol. 2012;86:6075–83. http://dx.doi. org/10.1128/JVI.06389-11
11. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9. http://dx.doi.org/10. 1093/molbev/msr121
12. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307–21. http://dx.doi.org/10.1093/sysbio/syq010
13. Han J, Jin M, Zhang P, Liu J, Wang L, Wen D, et al. Epidemiological link between exposure to poultry and all influenza A(H7N9) confirmed cases in Huzhou city, China, March to May 2013. Euro Surveill. 2013;18:pii:20481.
14. Fang LQ, Li XL, Liu K, Li YJ, Yao HW, Liang S, et al. Mapping spread and risk of avian influenza A (H7N9) in China. Sci Rep. 2013;3:2722. http://dx.doi.org/10.1038/srep02722
15. Song R, Pang X, Yang P, Shu Y, Zhang Y, Wang Q, et al. Surveillance of the first case of human avian influenza A (H7N9) virus in Beijing, China. Infection. 2014;42:127–33.
16. Li Q, Zhou L, Zhou M, Chen Z, Li F, Wu H, et al. Epidemiology of human infections with avian influenza A(H7N9) virus in China. N Engl J Med. 2014;370:520–32. http://dx.doi.org/10.1056/NEJMoa1304617
17. Bao CJ, Cui LB, Zhou MH, Hong L, Gao GF, Wang H. Live-animal markets and influenza A (H7N9) virus infection. N Engl J Med. 2013;368:2337–9. http://dx.doi.org/10.1056/NEJMc1306100
18. Zhang W, Wang L, Hu W, Ding F, Sun H, Li S, et al. Epidemiologic characteristics of cases for influenza A(H7N9) virus infections in China. Clin Infect Dis. 2013;57:619–20. http://dx.doi.org/10.1093/cid/cit277